BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09240.1
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471013 jgi|Araly1|471013|fgenesh2_kg.1__967__AT1G09240.1 1941 0.0
Ahg474806 jgi|Araly1|474806|fgenesh2_kg.1__4760__AT1G56430.1 758 0.0
> Ahg471013 jgi|Araly1|471013|fgenesh2_kg.1__967__AT1G09240.1
Length=1241
Score = 1941 bits (1051), Expect = 0.0
Identities = 1184/1247 (95%), Gaps = 14/1247 (1%)
Strand=Plus/Plus
Query 1 ACACCACCCGAGAACACACGATTATTCTCCAAAGAGAA-AGAGAAAAATCAATAACCTC- 58
||||||||||||||||||| |||||| |||||||| || ||||||||| ||||||||||
Sbjct 1 ACACCACCCGAGAACACACAATTATTTTCCAAAGA-AACAGAGAAAAACCAATAACCTCA 59
Query 59 -A--TAGTGTCGACATGGGTTGCCAAGACGAACAATTGGTGCAAACAATATGCGATCTCT 115
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TAGCTAGTGTCGACATGGGTTGCCAAGACGAACAATTGGTGCAAACAATATGCGATCTCT 119
Query 116 ACGAAAAGATCTCAAAGCTTGAGAGTCTAAAACCATCCGAAGATGTCAACATTCTCTTCA 175
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 120 ACGAAAAGATCTCAAAGCTGGAGAATCTAAAACCATCCGAAGATGTCAACATTCTCTTCA 179
Query 176 AGCAGCTCGTTTCCACATGCATACCACCAAACCCTAACATCGATGTCACCAAGATGTGTG 235
||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 180 AGCAGCTTGTTTCCACATGCATCCCACCAAACCCTAACATCGACGTCACCAAGATGTGTG 239
Query 236 ACAGAGTCCAAGAGATTCGACTTAATCTCATCAAGATTTGTGGTC-TAGCCGAAGGTCAC 294
||| ||||||||||||||||||||| ||||||||||| ||||| | |||| |||||||||
Sbjct 240 ACAAAGTCCAAGAGATTCGACTTAACCTCATCAAGATCTGTGG-CGTAGCTGAAGGTCAC 298
Query 295 TTAGAAAACCATTTCTCTTCGATCTTGACCTCTTACCAAGACAACCCACTTCATCATTTA 354
|||||| | |||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 299 TTAGAACATCATTTCTCTTCGATCTTGACTTCTTTCCAAGACAACCCACTTCATCATTTA 358
Query 355 AACATTTTCCCTTATTACAACAACTATTTGAAACTCGGAAAGCTCGAGTTCGACCTCCTC 414
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 359 AACATTTTCCCTTATTACAACAACTATTTAAAACTAGGAAAGCTCGAATTCGACCTCCTC 418
Query 415 GA-ACAAAACCT-AAATGGCTTTGTCCCAAAGAGTGTGGCTTTCATTGGATCTGGTCCTC 472
| |||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 -ACACAAAA-CTCAAATGGCTTTGTCCCAAAGAGTGTGGCCTTCATTGGATCTGGTCCTC 476
Query 473 TTCCTCTCACTTCCATCGTTCTTGCTTCATTCCATCTCAAAGACACAATCTTTCACAACT 532
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 477 TTCCTCTTACTTCCATCGTTCTTGCTTCATTACATCTCAAAGACACAATCTTTCACAACT 536
Query 533 TTGACATCGACCCATCAGCGAACTCACTCGCTTCTCTTCTGGTTTCCTCTGATCCAGACA 592
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 537 TTGACATCGACCCATCAGCGAACTCACTCGCTTCCCTTCTGGTTTCCTCTGATCCAGACA 596
Query 593 TCTCTCAACGCATGTTCTTCCACACCGTTGATATAATGGACGTGACAGAGAGCTTAAAGA 652
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 597 TCTCTCAACGGATGTTCTTCCACACCGTTGATATAATGGACGTGACAGAGAGCTTGAGGA 656
Query 653 GCTTTGATGTCGTGTTTCTAGCTGCTCTTGTTGGAATGAACAAAGAGGAGAAAGTTAAAG 712
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 657 GCTTCGATGTCGTGTTTCTAGCTGCTCTTGTTGGAATGAACAAGGAGGAGAAAGTTAAAG 716
Query 713 TGATCGAGCATCTGCAGAAACACATGGCTCCTGGTGCTGTGCTCATGCTTAGGAGTGCTC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGATCGAGCATCTGCAGAAACACATGGCTCCTGGTGCTGTGCTCATGCTTAGGAGTGCTC 776
Query 773 ATGGTCCGAGAGCGTTTCTTTATCCGATCGTTGAGCCGTGTGATCTTCAGGGGTTCGAGG 832
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATGGTCCGAGAGCATTTCTTTATCCGATCGTTGAGCCGTGTGATCTTCAGGGGTTCGAGG 836
Query 833 TTTTGTCTATTTATCACCCAACAGATGATGTTATCAACTCCGTGGTGATCTCTAAAAAGC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTTTGTCTATTTATCACCCAACAGATGATGTTATCAACTCCGTGGTGATCTCTAAAAAGC 896
Query 893 ATCCAGTTGTTTCAATTGGGAATGTTGGTGGTCCTAATTCATGCTTGCTCAAGCCTTGCA 952
|||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 897 ATCCTGTTGTTTCAACTGGGAATGTTGGTGGACCTAATTCATGCTTGCTCAAGCCTTGCA 956
Query 953 ACTGTTCCAAGACCCACGCGAAAATGAACAAGAACATGATGATCGAGGAGTTCGGAGCTA 1012
|||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 957 ACTGTTCCAAGATCCACGCGATAATGAACAAGAACATGATGATCGAGAAGTTCGGAGCTA 1016
Query 1013 GGGAGGAACAGTTGTCTTAAGGAGGACGTTTCTTGTTTCCTAATTCTCTATCTTATGGAA 1072
|||| ||||||||||||||| || |||||||||||| || |||||||||||||| |||||
Sbjct 1017 GGGAAGAACAGTTGTCTTAAAGACGACGTTTCTTGTCTCTTAATTCTCTATCTTCTGGAA 1076
Query 1073 GCTTCCTAATTATGAtttgtgtctttgtgttgtgtgttggtgtcttttctcaattgttct 1132
||||| |||||||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct 1077 GCTTC-TAATTATGATTTGTATCTTTGTGTTGTGTGTGGGTGTCTTTTCTTAATTGTTCT 1135
Query 1133 ttgtttgttttatttttctttctATATTCCTAGAAATGGATTTGTTTCGCGCGACACTGT 1192
|||||||||| ||||||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 1136 TTGTTTGTTT-ATTTTTCTTTCTATATTTCTAGAAATGGATTTGCTTCCCGCGACACTGT 1194
Query 1193 TGGGCTGAAACAGAACACGATTTTGTCTCATGCTCTTAACATATTTA 1239
||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1195 TGGGCTGAAACAGAACACGATTTTGTCTCCTGCTCTTAACTTATTTA 1241
> Ahg474806 jgi|Araly1|474806|fgenesh2_kg.1__4760__AT1G56430.1
Length=999
Score = 758 bits (410), Expect = 0.0
Identities = 707/848 (83%), Gaps = 29/848 (3%)
Strand=Plus/Plus
Query 53 AACCTCATAGTGTCGACATGGG---TTGCCAAGACGAACAATTGGTGCAAAC-A-ATATG 107
|||||||||||||||||||||| |||||||||||| ||| | || |||| | || ||
Sbjct 2 AACCTCATAGTGTCGACATGGGTTATTGCCAAGACGACCAACTCGT--AAACAAGATCTG 59
Query 108 CGATCTCTACGAAAAGATCTCAAAGCTTGAGA-GTCTAAAACCATCCGAAGATGTCAACA 166
|||||| |||||||||||||| ||||| |||| | ||||| || | ||||||||| |||
Sbjct 60 CGATCTATACGAAAAGATCTCGAAGCTCGAGACG-CTAAAGCCTTGTGAAGATGTCGACA 118
Query 167 TTCTCTTCAAGCAGCTCGTTTCCACATGCATACCACCAAACCCTAACATCGATGTCACCA 226
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 119 CTCTCTTCAAGCAGCTCGTGTCCACATGCATACCACCAAACCCTAACATCGACGTCACCA 178
Query 227 AGATGTGTG-ACAGAGTCCAAGAGATTCGACT-TAATCTCATCAAGATTTGTGGTCTAGC 284
| |||| || | | | |||||||||| || | || |||||||| |||||||| |||
Sbjct 179 AAATGTCTGAAAACA-TCCAAGAGATGAGA-TCAAACCTCATCAAAATTTGTGGAGAAGC 236
Query 285 CGAAGGTCACTTAGAAAACCATTTCTCTTCGATCTTGACCTCTTACCAAGACAACCCACT 344
|||||| ||||||| | || |||||||| ||||| ||||||| |||||||||||||
Sbjct 237 TGAAGGTTACTTAGAGCATCACTTCTCTTCAATCTTAACCTCTTTTGAAGACAACCCACT 296
Query 345 TCATCATTT-AAACATTTTCCCTTATTACAACAACTATTTGAAACTCGGAAAGCTCGAGT 403
||||||||| || | |||| ||||| |||||||||||| | ||||| | ||||| ||||
Sbjct 297 TCATCATTTGAATC-TTTTTCCTTACTACAACAACTATCTCAAACTAAGCAAGCTTGAGT 355
Query 404 TCGACCTCCTCGAACAAAACCTAAATGGCTT-TGTCCCAAAGAGTGTGGCTTTCATTGGA 462
|||| |||||| |||| ||||| || || || || ||||||| ||| |||||||||||
Sbjct 356 TCGATCTCCTCAAACAGAACCTTAACGG-TTCAGTTCCAAAGACTGTTGCTTTCATTGGC 414
Query 463 TCTGGTCCTCTTCCTCTCACTTCCATCGTTCTTGCTTCATTC-CATCTCAAAGACACAAT 521
||||||||||| ||||| ||||| |||||||||| || ||| |||||||||||| ||||
Sbjct 415 TCTGGTCCTCTCCCTCTTACTTCTGTCGTTCTTGCCTC-TTCGCATCTCAAAGACTCAAT 473
Query 522 CTTTCACAACTTTGACATCGACCCATCAGCGAACTCACTCGCTTCTCT-TCTGGTTTCCT 580
||||||||||||||||||||||||||||||||| | | || ||| | ||||||| |
Sbjct 474 CTTTCACAACTTTGACATCGACCCATCAGCGAATTTGGTAGCAGCTCGGT-TGGTTTCGT 532
Query 581 CTGATCCAGA-CATCTCTCAACGCATGTTCTTCCACACCGTTGATATAATGGACGTGACA 639
||||||| || | | || ||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 533 CTGATCCTGATCTT-TCACAACGTATGTTCTTCCACACCGTTGATGTAATGGATGTGACT 591
Query 640 GAGAGCTTAAAGAGCTTTGATGTCGTGTTTCTAG-CTGCTCTTGTTGGAATGAACAAAGA 698
|||||||||||| |||| || || ||||| || | |||||||||| |||||| | ||| |
Sbjct 592 GAGAGCTTAAAGGGCTTCGACGTTGTGTT-CTTGGCTGCTCTTGTCGGAATGGATAAAAA 650
Query 699 GGAGAAAGTTAAAGTGATCGAGCATCT-GCAGAAACACATGGCTCCTGGTGCTGTGCTCA 757
|||||| |||||||||||||||||||| | ||||||||||| ||||||||||| ||||||
Sbjct 651 GGAGAAGGTTAAAGTGATCGAGCATCTTG-AGAAACACATGTCTCCTGGTGCTTTGCTCA 709
Query 758 TGCTTAGGA-GTGCTCATGGTCCGAGAGCGTTTCTTTATCCGATCGTTGAGCCGTGTGAT 816
|| ||| || |||||||||| || ||||||||||| ||||| ||||| ||||| ||||||
Sbjct 710 TG-TTAAGAAGTGCTCATGGACCTAGAGCGTTTCTCTATCCCATCGTCGAGCCTTGTGAT 768
Query 817 CTTCAGGGGTTCGAGGTTTTGTCTATTTATCACCCAACAGATGATGTTATCAACTCCGTG 876
|| || || ||| | ||||| || |||||||||| || ||||| |||||||||||| |
Sbjct 769 CTCCAAGGTTTCCAAGTTTTATCGGTTTATCACCCTACCGATGAAGTTATCAACTCCATT 828
Query 877 GTGATCTC 884
|| |||||
Sbjct 829 GTAATCTC 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46700573325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5