BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09250.1 Length=980 Score E Sequences producing significant alignments: (Bits) Value Ahg471014 jgi|Araly1|471014|fgenesh2_kg.1__968__AT1G09250.1 1075 0.0 > Ahg471014 jgi|Araly1|471014|fgenesh2_kg.1__968__AT1G09250.1 Length=875 Score = 1075 bits (582), Expect = 0.0 Identities = 767/850 (90%), Gaps = 38/850 (4%) Strand=Plus/Plus Query 129 TTAATGGTGGAGTCTCTGTTCCCGAGCATCGAAAACACAGGTGAATCGTCT-C-GA---- 182 |||||||||||||||||||| |||||||| ||||||||| ||||||||||| | || Sbjct 46 TTAATGGTGGAGTCTCTGTTTCCGAGCATAGAAAACACAAGTGAATCGTCTCCGGAGTCG 105 Query 183 AGA---AAGAAGCCGAGGATATCAGAGACGGCGGAGGCGGAGATAGAGGCACGACGTG-T 238 ||| ||||| ||||||||||| | || | | ||||||||||||||||||||| | | Sbjct 106 AGACGGAAGAAACCGAGGATATC-G-GA-GAC---GGCGGAGATAGAGGCACGACG-GAT 158 Query 239 CAACGAAGAAAGCTTGAAGAGATGGAAAACGAATCGTGTGCAACAGATCTACGCTTGTAA 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 159 CAACGAAGAAAGCTTGAAGAGATGGAAAACGAATCGTGTGCAACAGATCTACGCTTCTAA 218 Query 299 GCTCGTCGAAGCTTTACGCCGAGTTCGTCAGAGATCTTCCACCACCAGCAACAACGAGAC 358 |||||||||||||||||| |||||||||||||| || ||||||| | | | ||||| Sbjct 219 GCTCGTCGAAGCTTTACGTCGAGTTCGTCAGAGGTCGTCCACCA---GTA-CG--GAGAC 272 Query 359 CGATAAACTCGTCTCCGGCGCGGCGAGGGAGATACGTGATACGGCGGATCGAGTTCTAGC 418 ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| || Sbjct 273 CGATAAAGTCGTCTCCGGCGCGGCGAGAGAGATACGTGAGACGGCGGATCGAGTTCTGGC 332 Query 419 TGCGTCCGCTCGTGGTACGACTCGGTGGAGCAGAGCGATTTTAGCGAGTCGCGTCCGAGC 478 |||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 333 TGCGTCGGCTCGTGGCACGACTCGGTGGAGCAGAGCGATTTTATCGAGTCGCGTCCGAGC 392 Query 479 GAAGCTGAAGAAACATAGAAAGGCGAAAAAGTCAACGGGAAATTGTAAATCGAGAAAAGG 538 |||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 393 GAAGTTGAAGAAACATAGAAAGGCGAAGAAGTCAACCGGAAATTGTAAATCGAGAAAAGG 452 Query 539 TCTCACGGAGACGAATCGGATTAAGTTACCGGCGGTTGAGAGAAAACTGAAGATTCTTGG 598 | | |||||| |||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 453 TGTGACGGAGGCGAATCGGATTAAGTTACCGGCGGTTGACAGAAAACTGAAGATTCTCGG 512 Query 599 CCGTTTGGTTCCTGGTTGCCGGAAAGTCTCTGTACCGAATCTTTTAGATGAAGCGACCGA 658 ||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 513 CCGGTTAGTTCCCGGTTGCCGGAAAGTCTCTGTACCTAATCTTTTAGATGAAGCGACCGA 572 Query 659 TTACATCGCAGCGTTAGAGATGCAGGTTCGAGCCATGGAGGCTCTCGCCGAACTTTTAAC 718 ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 573 TTACATCGCGGCGTTAGAGATGCAGGTTCGAGCCATGGAGGCTCTAGCAGAACTTTTAAC 632 Query 719 CGCAGCCGCACCACGGACGACGTTGACCGGAACTTAACGGCGGC---AGTTAGTTTGTCA 775 ||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| Sbjct 633 CGCCGCCGCACCACGAACGACGTTGACGGGAACTTAACGGCGGCGGCAGTTAGTTTGTCA 692 Query 776 GTTGTTAATTAGcttttctttt-----acctttttacccctttattttggcttcaagtgt 830 ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| Sbjct 693 GTTGTTAATTAGCTTTTGTTTTTTTTTACCTTTTTACCCCTTTATTTTGGCT-CAAGTGT 751 Query 831 tttttttttCTCGTCGACGCGATTTTAATTTATTAAATTCATGTATTTTATTTGTATACA 890 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 TTTTTTTTAATCGTCGCCGCGATTTTAATTTATTAAATTCATGTATTTTATTTGTATACA 811 Query 891 TCATCACTTCtttttttttgtatccattttgatctttctttgttttttCGTTAGATAATC 950 ||| || |||| ||| ||| ||||||||||||||||||| |||| | |||||||||| Sbjct 812 TCAG---TT-TTTTATTT-GTAGCCATTTTGATCTTTCTTTGGTTTTCC-TTAGATAATC 865 Query 951 AAAGTTATCT 960 |||||||||| Sbjct 866 AAAGTTATCT 875 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36407385735 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5