BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09340.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471025 jgi|Araly1|471025|fgenesh2_kg.1__979__AT1G09340.1 2281 0.0
> Ahg471025 jgi|Araly1|471025|fgenesh2_kg.1__979__AT1G09340.1
Length=1454
Score = 2281 bits (1235), Expect = 0.0
Identities = 1386/1456 (95%), Gaps = 21/1456 (1%)
Strand=Plus/Plus
Query 1 AGATAATTGTCTTATCCCTTCAAAATTTAAGACTTTTAATGATCGGAAGGAACAAGATGA 60
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AGATAATTATCTTATCCCTTCAAAAATTAAGACTTTTAATGATCGGAAGGAACAAGATGA 60
Query 61 CGAGGTCCCACGAACC--AC-C----A-T-ACACACTTCAATTTCAAATAAGAGCTTTTC 111
||||||||||||||| || | | | ||||||||||||||||||||||| ||||||
Sbjct 61 TGAGGTCCCACGAACCATACACAGATACTCACACACTTCAATTTCAAATAAGACCTTTTC 120
Query 112 TTCAGTTGTTGCTCAGAGACTTAACC-A-ATCAACCATGGCGAAGATGATGATGTTGCAA 169
||||||||||||||||||| | |||| | | |||||||||||||||||||||||||||||
Sbjct 121 TTCAGTTGTTGCTCAGAGAGTGAACCAACAACAACCATGGCGAAGATGATGATGTTGCAA 180
Query 170 CAGCATCAGCCTTCTTTCTCTCTCCTTACTTCTTCTCTGTCTGACTTCAATGGCGCTAAG 229
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 181 CAGCATCAGCCTTCTTTCTCTCTTCTTACTTCTTCTCTCTCTGACTTCAATGGCGCTAAG 240
Query 230 CTCCATTTACAAGTCCAGTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTT 289
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCCATTTACAAGTCCAGTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTT 300
Query 290 TCAGCGTCGAGCGAAAAGAAGATTCTGATAATGGGTGGTACTCGATTCATTGGTCTGTTC 349
||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 301 TCAGCATCTAGCGAAAAGAAGATTCTGATAATGGGTGGCACTCGATTCATTGGTGTGTTC 360
Query 350 TTGTCCAGGATCCTTGTCAAAGAGGGACATCAGGTTACATTGTTCACAAGGGGTAAATCT 409
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGTCCAGGCTCCTTGTCAAAGAAGGACATCAGGTTACATTGTTCACAAGGGGTAAATCT 420
Query 410 CCTATTGCCAAACAATTGCCCGGTGAATCTGACCAAGACTTTGCTGATTTCTCTTCTAAG 469
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 CCTATTGCCAAACAATTGCCCGGTGAATCTGACCAAGACTTTGCTGATTTTTCTTCTAAG 480
Query 470 ATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGAAGTCAAGTCTTTCAGCA 529
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 481 ATTCTTCACTTGAAAGGAGATAGAAAGGACTATGACTTTGTGAAATCAAGTCTTTCAGCA 540
Query 530 GAAGGCTTCGATGTTGTTTATGATATCAACGGGAGGGAGGCCGAAGAAGTTGAGCCCATA 589
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 GAAGGCTTCGATGTCGTTTATGATATCAACGGGAGGGAGGCCGAAGAAGTTGAGCCTATA 600
Query 590 CTAGAAGCACTACCCAAACTAGAGCAGTACATCTACTGTTCTTCAGCTGGTGTTTATCTG 649
|||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 ATAGATGCACTGCCCAAACTAGAGCAGTACATCTATTGTTCTTCAGCTGGTGTTTATCTG 660
Query 650 AAATCTGATATCTTGCCACATTGTGAGGAGGATGCAGTTGATCCGAAGAGCAGGCACAAG 709
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAATCTGATATCTTACCACATTGTGAGGAGGATGCAGTTGATCCGAAGAGCAGGCACAAG 720
Query 710 GGGAAGCTGGAGACTGAGAGCTTACTGCAATCAAAAGGTGTAAACTGGACTTCTATACGT 769
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 GGGAAGCTAGAGACTGAGAGCTTACTGCAATCAAAAGGTGTAAATTGGACTTCTATACGT 780
Query 770 CCTGTCTACATCTACGGTCCATTGAATTACAACCCCGTCGAAGAATGGTTTTTCCACCGT 829
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 781 CCTGTCTACATCTATGGTCCATTGAACTACAACCCCGTCGAAGAATGGTTCTTCCACCGT 840
Query 830 CTAAAGGCAGGTCGCCCAATCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGT 889
||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 CTAAAAGCCGGCCGCCCAATCCCAGTTCCAAACTCTGGGATACAGATCTCACAACTCGGT 900
Query 890 CACGTTAAGGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CACGTTAAGGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA 960
Query 950 GAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGC 1020
Query 1010 GCAAAGGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCGAC 1069
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GCAAAGGCTGGTGGGTTTCCAGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCGAC 1080
Query 1070 TTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGCATTTCTTTGCATCGGTGGAGAAA 1129
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1081 TTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGCATTTCTTTGCGTCGGTGGAGAAA 1140
Query 1130 GCAAAGCATGTCCTCGGATGGAAACCGGAGTTCGACTTAGTGGAGGGTCTCACTGACTCA 1189
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1141 GCAAAGCATGTCCTCGGATGGAAACCAGAGTTCGACTTAGTGGAGGGTCTCACGGACTCA 1200
Query 1190 TACAACCTTGATTTCGGTCGCGGAACATTCCGGAAAGAAGCGGATTTCACCACTGACGAC 1249
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 TACAACCTTGATTTCGGTCGCGGAACATTCCGAAAAGAAGCGGATTTCACCACTGACGAC 1260
Query 1250 ATGATTCTGAGCAAGAAACTTGTTCTTCAATAATCGAAATCCTAAGAG-T-TGCTCATTC 1307
||||||||||||||||||||||||||||||||||| || |||||||| | | |||||
Sbjct 1261 ATGATTCTGAGCAAGAAACTTGTTCTTCAATAATC-AA-TCCTAAGAAATATAAACATTC 1318
Query 1308 TTGGCTTGTATGATTCTGATCACCCGGTTCTCTTAAAGTTCTGAACTTTATTGTCATCTC 1367
|||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1319 TTGGGTTGTATGATTCTGATCACGCGGTTCTCTTAAAGTTCTAAACTTTATTGTCATCTC 1378
Query 1368 ACGT--A--TGT-T-ATGGTCCGGATTTTGTTCGACTTTTCTCTAAAGAAGTCAAGCTAG 1421
|||| | ||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACGTTCACGTGTGTTATGGTTCGGATTTTGTTCGACTTTTCTCTAAAGAAGTCAAGCTAG 1438
Query 1422 GGACGATGAAGAAACC 1437
||||||||||||||||
Sbjct 1439 GGACGATGAAGAAACC 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5