BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09350.1 Length=1301 Score E Sequences producing significant alignments: (Bits) Value Ahg311978 jgi|Araly1|311978|fgenesh1_pm.C_scaffold_1000758 1640 0.0 > Ahg311978 jgi|Araly1|311978|fgenesh1_pm.C_scaffold_1000758 Length=1005 Score = 1640 bits (888), Expect = 0.0 Identities = 967/1006 (96%), Gaps = 2/1006 (0%) Strand=Plus/Plus Query 70 ATGGCACCTGAGATGAACAACAAGTTGAGCTACGGAGAAAAGAAGAGAGCGTACGTTACG 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCACCTGAGATGAACAACAAGTTGAGCTACGGAGAAAAGAAGAGAGCGTACGTTACG 60 Query 130 TTCCTCGCCGGAACCGGAGACTACGTGAAAGGAGTGGTTGGTCTGGCTAAAGGGCTAAGG 189 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTCCTAGCCGGGACCGGAGACTACGTGAAAGGAGTGGTTGGTCTGGCTAAAGGGCTAAGG 120 Query 190 AAAACTAAAAGCAAGTACCCATTAGTGGTTGCTGTGTTACCTGACGTGCCGGCCGATCAC 249 ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 121 AAAGCTAAAAGCAAGTACCCATTAGTGGTTGCTGTGTTACCTGACGTCCCGGTGGATCAC 180 Query 250 CGGAGACAGCTATTGGACCAAGGCTGCGTCATCAAGGAGATTCAGCCGGTTTACCCACCG 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 CGGAGACAGCTATTGGACCAAGGCTGCGTCATCAAGGAGATTCAGCCGGTTTACCCGCCG 240 Query 310 GATAACCAAACTCAGTTTGCTATGGCTTACTACGTCCTCAACTACTCTAAACTTCGTATT 369 || ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| Sbjct 241 GAGAACCAAACTCAGTTTGCCATGGCTTACTACGTCCTCAACTACTCCAAGCTTCGTATT 300 Query 370 TGGAAGTTTGTAGAGTACAGCAAGCTGATATACTTAGACGGAGACATACAAGTGTTTGAG 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGGAAGTTTGTAGAGTACAGCAAGCTGATATACTTAGACGGAGACATACAAGTGTTTGAG 360 Query 430 AACATAGATCACTTGTTTGATCTTCCTGACGGCAACTTCTACGCCGTTAAAGACTGTTTC 489 ||| ||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||| Sbjct 361 AACGTAGATCACTTGTTCGATCTTCCCGACGGCAATTTCTACGCCGTTAAAGATTGTTTC 420 Query 490 TGCGAGAAGACTTGGAGCCACACGCCTCAGTACAAGATTGGCTACTGCCAACAGTGTCCG 549 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 421 TGCGAGAAGACATGGAGCCACACGCCTCAGTACAAGATCGGCTACTGCCAACAGTGTCCG 480 Query 550 GACAAGGTGACGTGGCCTGAGTCAGAGCTTGGTCCTAAGCCACCGTTGTACTTCAACGCC 609 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 481 GACAAGGTGACGTGGCCAGAGACAGAGCTTGGTCCTAAGCCACCGTTGTACTTCAACGCC 540 Query 610 GGCATGTTCGTCTACGAGCCAAGCCTCCCCACTTATTACAACCTTTTGGAGACACTCAAA 669 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 541 GGCATGTTCGTCTACGAGCCAAGCCTCCCCACTTATTACAACCTTTTGGAGACTCTCAAA 600 Query 670 GTTGTCCCTCCCACACCTTTTGCTGAACAGGATTTCTTGAACATGTACTTCAAAGACATA 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GTTGTCCCTCCCACACCTTTTGCTGAACAGGATTTCTTGAACATGTACTTCAAAGACATA 660 Query 730 TACAAGCCTATTCCACCAGTTTACAATCTTGTCTTGGCCATGCTCTGGAGGCATCCAGAG 789 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 661 TACAAGCCTATTCCACCAGTATACAATCTTGTCTTGGCCATGCTCTGGAGGCATCCAGAG 720 Query 790 AACATAGAGCTTAACGAAGCTAAGGTTGTTCATTACTGTGCAGCCGGTGCTAAGCCTTGG 849 |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 721 AACATAGAGCTTGACGAAGCCAAGGTTGTTCATTACTGTGCAGCTGGTGCTAAGCCTTGG 780 Query 850 AGGTTCACAGGCCAAGAAG-GAAATATGGAGAGGGAAGACATCAAGATGCTTGTAGAGAA 908 ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| Sbjct 781 AGGTTCACAGGCCAAGAAGAGAA-TATGGAGAGAGAAGACATCAAGATGCTTGTAGAGAA 839 Query 909 ATGGTGGGACATTTACAACGACGAGTCTCTTGACTACAAAAACTTTAATGTGCATTGCGG 968 ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 840 ATGGTGGGACATTTATAACGACGAGTCACTTGACTACAATAACTTTAATGTGCATTGCGG 899 Query 969 ACAAAAAGAAGATGTTCACAGGAAACCGAAAACCCTTCCACAGTTCTTTACAGATTTGTC 1028 ||||||||||||||| |||| ||||| | |||| |||||||||||||||||||| ||||| Sbjct 900 ACAAAAAGAAGATGTCCACAAGAAACAGCAAACACTTCCACAGTTCTTTACAGAATTGTC 959 Query 1029 TGAAGCTGATGTGCTTCAATGTGCCAAAGCTCCATCCGCGGCTTAG 1074 ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 960 TGAAGCTGATGTGCTTCAATGCACCAAAGCTCCATCCGCGGCTTAG 1005 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48644842092 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5