BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09400.1 Length=1182 Score E Sequences producing significant alignments: (Bits) Value Ahg919695 jgi|Araly1|919695|scaffold_100976.1 1596 0.0 > Ahg919695 jgi|Araly1|919695|scaffold_100976.1 Length=1096 Score = 1596 bits (864), Expect = 0.0 Identities = 1019/1096 (93%), Gaps = 1/1096 (0%) Strand=Plus/Plus Query 21 TTCCCCTTCTCACTCCATTCTCAATGAAAAACTTCAATCTTACTCACAGAATCGTTATGG 80 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 TTCCCCTTCTCACTCCATTCTCAATGAAAAACTTCAATCTTACTCACAGAATAGTTATGG 60 Query 81 CGCCAATGGCGAGAATGAGATCATACGGTAACATTCCACAACCTCACGTCGCCTTGTATT 140 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 CGCCGATGGCGAGAATGAGATCATACGGTAACGTTCCACAACCTCACGTCGCCTTGTATT 120 Query 141 ATTGTCAAAGAACAACTCCGGGAGGTCTTCTCATCAGTGAAGCCACCGGAGTTTCTGAAA 200 | | ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 121 ACTCTCAGAGAACAACTCCGGGAGGTCTTCTCATCAGCGAAGCCACCGGAGTTTCCGAAA 180 Query 201 CCGCCATGGCGTATCAAAACATGCCAGGGATATGGAGGAAAGAACAAATCGAAGCATGGA 260 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 CCGCCATGGCGTATCAAAACATGCCAGGGATATGGAGGAAAGAACAAATCCAAGCATGGA 240 Query 261 AGCCCATCGTTGACGCTGTTCACTCTCACGGCGGCATCTTCTTCTGCCAGCTCTGGCACG 320 |||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||| Sbjct 241 AGCCCATCGTCGACGCCGTTCACTCTCACGGCGGCGTCTTCTTCTGCCAGCTATGGCACG 300 Query 321 CTGGTCGCGTTTCTCATCAAGATTGTCAGCCAAATGGAGAATCTCCGGTCTCTTCAACAG 380 |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || | Sbjct 301 CTGGTCGCGTTTCTCATCGAGATTGTCAGCCAAATGGAGAAGCTCCGGTCTCTTCTACGG 360 Query 381 ATAAGCCATTCGCCGATGATCCATCGAATGAGTTTACACCTCCGAGAAGGTTAAGAACTG 440 |||||||||||| ||| ||||||||||||||||| || |||||||||||| ||||||||| Sbjct 361 ATAAGCCATTCGTCGAGGATCCATCGAATGAGTTCACTCCTCCGAGAAGGCTAAGAACTG 420 Query 441 ACGAAATCCCGACAATTATCAATGATTTTCGTCTCGCTGCAAGAAACGCAACCGAAGCTG 500 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 421 ACGAAATCCCGACAATTGTCAATGATTTTCGTCTCGCTGCAAGAAACGCAATCGAAGCTG 480 Query 501 GTTTTGATGGAGTAGAGATCCATGGAGCTCACGGGTACTTGATTGACCAGTTTATGAAAG 560 |||| || ||||| ||||||||||||||||||||||| ||| | ||||||||| |||||| Sbjct 481 GTTTCGACGGAGTGGAGATCCATGGAGCTCACGGGTATTTGCTCGACCAGTTTGTGAAAG 540 Query 561 ACTCTGTTAACGATCGAACCGATAGTTACGGCGGATCTCTAGAGAATCGATGTAGATTCG 620 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 541 ACTCTGTTAACGATCGAACCGATAGGTACGGCGGATCTCTAGAGAATCGATGCAGATTCG 600 Query 621 CTTTACAAGTAATCGAAGCGGTTTCGAAAGAGATCGGACCTGATCGTGTCGGAATCAGAC 680 |||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 601 CTTTACAAGTTATAGAAGCGGTCTCGAACGAGATCGGACCTGATCGTGTCGGAATCAGAC 660 Query 681 TCTCACCGTTCGCTGATTACATGGAATCCGGAGATACAGATCCAAAAAGATTAGGGCTTT 740 |||| ||||||||| ||||||||||||| |||||| |||| ||||||||||||||||||| Sbjct 661 TCTCTCCGTTCGCTAATTACATGGAATCAGGAGATTCAGACCCAAAAAGATTAGGGCTTT 720 Query 741 ACATGGCCAAGTCTCTCAACAGATTCGAGATACTCTACTGCCACATGATTGAGCCTAGGA 800 ||||||| || ||||| ||||||||||||||||||||||| |||||| | |||||||| | Sbjct 721 ACATGGCAAACTCTCTGAACAGATTCGAGATACTCTACTGTCACATGGTCGAGCCTAGAA 780 Query 801 TGAAAACCGTCAGTGAGATTTTCGAGTGCAGGGAATCACTTACGCCGATGAGAAATGCGT 860 ||||||| | |||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 781 TGAAAACAGCCAGTGAGATTTTCGAGTGCACGGAATCACTTACGCCGATGAGAAAGGCGT 840 Query 861 TTAATGGAACGTTCATTGTCGCCGGAGGTTATACAAGAGAAGACGGAAACAAGGCGGTGG 920 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 841 TTAATGGAGCGTTCATTGTCGCCGGAGGTTATACAAGAGAAGACGGGAACAAGGCGGTGG 900 Query 921 CAGAGGGAAGAACAGATCTTGTAGCGTACGGAAGATTGTTCTTAGCTAATCCTGATTTGC 980 |||||| ||||||||||||||| ||||||||| || ||||||| |||||||| ||||||| Sbjct 901 CAGAGGAAAGAACAGATCTTGTGGCGTACGGACGACTGTTCTTGGCTAATCCAGATTTGC 960 Query 981 CTAAAAGGTTTGAGCTCAATGCTCCGCTGAATAAGTAAGACAGACCAAGTTTCTACAGTT 1040 ||| |||||| |||||| |||| |||||||||||||| ||||||||||||||||| |||| Sbjct 961 CTAGAAGGTTCGAGCTCGATGCCCCGCTGAATAAGTACGACAGACCAAGTTTCTATAGTT 1020 Query 1041 CTGATCCTGTTGCTGGTTACACTGATTACCCTTTTCTCGATACCACAGATCAATAAGACA 1100 |||||| || | |||||| |||||||||||||||||||| ||||||||||||||| || Sbjct 1021 CTGATCATGCCGTTGGTTATACTGATTACCCTTTTCTCGACACCACAGATCAATAAAACC 1080 Query 1101 AGAGTCTTGTTCAATC 1116 | ||||||||||||| Sbjct 1081 -GTGTCTTGTTCAATC 1095 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44108214969 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5