BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09420.2
Length=2237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471034 jgi|Araly1|471034|fgenesh2_kg.1__988__AT1G09420.1 2039 0.0
> Ahg471034 jgi|Araly1|471034|fgenesh2_kg.1__988__AT1G09420.1
Length=2110
Score = 2039 bits (1104), Expect = 0.0
Identities = 1265/1342 (94%), Gaps = 13/1342 (1%)
Strand=Plus/Plus
Query 60 CAGAAAACTTAAACTTGCACTCGTCTTCCACTTTGATCCA-CTT-AAAGCAGCTTTAAAG 117
||||||||||||||||||||||||||||||| || | || ||| |||| ||| ||
Sbjct 1 CAGAAAACTTAAACTTGCACTCGTCTTCCAC-TTAAAGCAGCTTCAAAG-TTTTTTTCAG 58
Query 118 CTTTGAACATGTTTAGCTATAATCCCTGAGGAACTATCCTCATGTCTCTCTCCAGTTGCT 177
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CTTCAAAGTTTTTTAGCTATAATCCCTGAGGAACTATCCTCATGTCTCTCTCCAGTTGCT 118
Query 178 TGCTTCCCTTTTCTCAATCAGCGACGGCTCCGTCTTCCTCCGTCTGCTCTTGCCATCTCG 237
||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||
Sbjct 119 TGCTTCCCTTTTCTCAATCAGCGACGGCTCCATCGTCCTCCGTCTGCCCTTGCCACCTCG 178
Query 238 CCGCCTCTTTTTCTAATTTTCCGGTTTCGTCAAGAGACTATAGTTTCTCCAGAAGTGGAA 297
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 179 CCGCCTCTTTTTCGAATTTTCCGGTTTCATCAAGAGACTATAGTTTCTCCAGAAATGGAA 238
Query 298 GCCTTGTTCTCAACGGAGGAGGCTCGAATCTCTGCCGGAGATTCTGTGGTTTGAAACTGT 357
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 GCCTTGTGCTCAACGGAGGAGGCTCGAATCTCTGCCGGAGATTCTGTGGGTTGAAACTGT 298
Query 358 GGATACTTAAGAGCTTGAATCGTAGACAAGGCAACAACAGAAAACATCAGCCTGTAAACG 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 299 GGATACTTAAGAGCTTGAATCGTAGACAAGGCAACAACAGAAAATATCAGCCTGTAAACG 358
Query 418 AGCTTACAA-CACACTCAAAGCACACTTTCCTCAGCGATGATGAACGAGGTTTTGCTGAA 476
|||||| || ||| |||| |||||||||| || ||| | |||||| ||||| |||||||
Sbjct 359 AGCTTA-AAGCACGCTCAGAGCACACTTTTCTTAGC-A--ATGAACAAGGTTCTGCTGAA 414
Query 477 GAAACTAGAGCTGAAGATTTACGACCAGAAGAGAATATTCTGGGAACGGATTTGAATGAT 536
|||||| |||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 415 GAAACTGGAGCTGCAGATTTACGACCAGAAGAGCATATTCTAGGAACTGATTTGAATGAT 474
Query 537 GGGTTTCACA-ATGTTGGAGACTTACCACCTGTGTCAAAACAACTCTCGGATGATCTTTC 595
|| ||||||| | |||||||||||||||||||||||||||||| ||||||| | || |||
Sbjct 475 GGTTTTCACAGA-GTTGGAGACTTACCACCTGTGTCAAAACAATTCTCGGACGGTCGTTC 533
Query 596 AGATGTTCGAAGAAG-GGCCTCACTTTGCATTGCTGTTGTAGGAGCCACTGGTGAGCTAG 654
|||||||||||| || |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 534 AGATGTTCGAAG-AGAGGCCTCGCTTTGCATTGCTGTTGTAGGAGCTACTGGTGAGCTAG 592
Query 655 CAAGAGGGAAGATTTTCCCGGCATTGTTTGCGTTGTATTATAGCGGCTACCTTCCTGAGG 714
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CAAGAGGGAAGATTTTTCCGGCATTGTTTGCGTTGTATTATAGCGGCTACCTTCCTGAGG 652
Query 715 ATGTTGCTATATTTGGGGTTTCAAGAAAGAATCTGACAGATGAAGACCTCAGATCCATCA 774
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 ATGTTGCTATTTTTGGGGTTTCAAGAAAGAATCTGACAGATGAAGACCTCAGATCCATCA 712
Query 775 TTGCATCAACGCTGACTTGCCGTGTTGATCATCAGGAGAATTGTGGGGGCAAGATGGATG 834
| |||||||| ||||||||||| |||||||||||||| ||||| |||| |||||||||||
Sbjct 713 TCGCATCAACTCTGACTTGCCGCGTTGATCATCAGGAAAATTGCGGGGACAAGATGGATG 772
Query 835 CATTTCAGAGTAGAACATACTATATCAATGGAGGTTATAATAACAGGGATGGGATGTCCC 894
|||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 773 CATTTCTTAGTAGAACATACTATATCGATGGAGGTTACAATAACAGGGATGGGATGTCCC 832
Query 895 GACTTGCCGAGAGAATGAAACAGATTGAGGGAGAATCAGAAGCAAATAGAATCTTTTACC 954
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 833 GACTTGCCGAGAGAATGAAACAGATTGAGGGAGAATCAGAAGCCAATAGGCTCTTTTACC 892
Query 955 TCTCAGTACCTCAAGAAGCTCTGGTGGATGTGGCATGCACCATTGGAGATAACGCTCAGG 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 893 TCTCAGTACCTCAAGAAGCTCTGGTGGATGTGGCATGCACCATTGGAGATAATGCTCAGG 952
Query 1015 CACCACGAGGCTGGACTCGAATAATAGTTGAGAAACCTTTTGGTTTTAACTCACATTCGT 1074
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 953 CACCACGAGGCTGGACTCGTATAATAGTAGAGAAACCTTTTGGTTTTAACTCACATTCGT 1012
Query 1075 CTCATCAGTTAACAAAGTCACTTCTCTCTAAGTTTGAAGAGAAGCAAATCTACAGGATAG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CTCATCAGTTAACAAAGTCACTTCTCTCTAAGTTTGAAGAGAAGCAAATCTACAGGATAG 1072
Query 1135 ATCACATGTTAGGAAGAAACCTCATTGAAAATCTGACAGTGTTAAGGTTTTCAAATCTAG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 ATCACATGTTAGGAAGAAACCTCATTGAAAATCTGACAGTGTTAAGGTTTTCAAATCTAG 1132
Query 1195 TTTTTGAACCACTATGGAACAGAACATACATACGCAATATACAGGTTATTATATCAGAAT 1254
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1133 TTTTTGAACCACTATGGAACAGAACATACATACGCAATATACAGGTTATTGTATCAGAAT 1192
Query 1255 CAATTGCGCAAACAGAAAAGTTTTCTGATGGATATGGAATAATACGGGACATAGTGCACA 1314
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1193 CAATTGCGCAAACAGAAAAGTATTCTGATGGATATGGAATAATACGGGATATAGTGCACA 1252
Query 1315 GCCATATACTTCAGACAATCGCATTACTTGCCATGGAACCTCCGATAAGTCTCGATGGTG 1374
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1253 GCCATATATTTCAGACAATCGCATTACTTGCCATGGAACCTCCTATAAGTCTCGATGGTG 1312
Query 1375 AAGATATCCGAAATGAAAAGGT 1396
||||||||||||||||||||||
Sbjct 1313 AAGATATCCGAAATGAAAAGGT 1334
Score = 706 bits (382), Expect = 0.0
Identities = 394/400 (99%), Gaps = 0/400 (0%)
Strand=Plus/Plus
Query 1430 GGTTTTAAGATCAATTCGCAAGATAGACCCGCGTGATGTCATCCTTGGCCAGTATAAATC 1489
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GGTTTTAAGATCAATTCGCAAAATAGACCCGCGTGATGTCATCCTTGGCCAGTATAAATC 1397
Query 1490 CAGTTCCCGAGACAAGAACGGTGTGATCTTGAACGGTGTAGACCCTACATATTGTGCAGC 1549
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1398 CAGTTCCCGAGACAAGAACGGTGTGATCTTAAACGGTGTAGACCCTACATATTGTGCAGC 1457
Query 1550 AGCCTTGTATATTGATAATGCACGTTGGGATGGTGTACCTTTCCTTGTAAGAGTTGGCAC 1609
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1458 AGCCTTGTATATTGATAATGCACGTTGGGATGGTGTACCTTTCCTTATAAGAGTTGGCAC 1517
Query 1610 TGGCCTCATTAAACACAGAGTGGAGATTCATGTGCAATTCCGGCATGTTCCTGGAAACCT 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 TGGCCTCATTAAACACAGAGTGGAGATTCATGTGCAATTCCGGCATGTTCCTGGAAACCT 1577
Query 1670 ATACCGAGAAAATATTGGAATAAACATAGATTTGGGGACAAATGAGCTTATTCTACGTGA 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 ATACCGAGAAAATATTGGAATAAACATAGATTTGGGGACAAATGAGCTTATTCTACGTGA 1637
Query 1730 CGAACCTGATGAGGCCATCCTGGTGAAAATCAACAACAAGGTTCCTGGTTTAGGTCTTCA 1789
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1638 CAAACCTGATGAGGCCATCCTGGTGAAAATCAACAACAAGGTTCCTGGTTTAGGTCTCCA 1697
Query 1790 GCTAGACGCTTCTGAACTTAACTTGCTCTATAAAGACAGG 1829
|||||||||||||||||||||| |||||||||||||||||
Sbjct 1698 GCTAGACGCTTCTGAACTTAACCTGCTCTATAAAGACAGG 1737
Score = 508 bits (275), Expect = 5e-143
Identities = 320/340 (94%), Gaps = 9/340 (3%)
Strand=Plus/Plus
Query 1907 AAGCGATGAGGTTGCAGCAGCATGGAACATTCTTAGTCCGGTTCTAGAAGAGATAGACAA 1966
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1767 AAGCGATGAGGTTGCAGCAGCATGGAACATTCTGAGTCCGGTTCTAGAAGAGATAGACAA 1826
Query 1967 GCATCACACAGCTCCGGAGTTGTATGAATTTGGTGGACGAGGACCAGTTGCGGCATACTA 2026
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 GCACCACACAGCTCCGGAGTTGTATGAATTTGGTGGACGAGGACCAGTTGCGGCATACTA 1886
Query 2027 TCTTTGGGCCAAGCACGGTGTCCCATGGGCAGATGACTGAAGAAGAAACATAGATGCAGC 2086
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1887 TCTCTGGGCCAAGCACGGTGTCCCATGGGCAGATGACTGAAGGAGAAACATAGATGCAGC 1946
Query 2087 AACAAACAAATGAGAGTGATTCTGAATGGTTATTGTGAAGTGTGT----T---T--GTTT 2137
|||| ||||||||| ||||||||||||||||||||||||||||| | | ||||
Sbjct 1947 AACATCCAAATGAGAATGATTCTGAATGGTTATTGTGAAGTGTGTGAAGTGGGTTTGTTT 2006
Query 2138 AGCTTGAAGCTGTGCCATTCCCTGTAGACTGTACATATGTACACATGTATGTCATGTTGC 2197
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2007 AGCTTGAAGCTGAACCATTCCCTGTAGACTGTACATATGTACACATGTATGACATGTTGC 2066
Query 2198 TATATGAATGTCCATCATGGTGGGGTCCATAATAGTGTTG 2237
| ||||||||||||||||||||||||||||||||||||||
Sbjct 2067 TGTATGAATGTCCATCATGGTGGGGTCCATAATAGTGTTG 2106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84217531695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5