BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09430.1 Length=1838 Score E Sequences producing significant alignments: (Bits) Value Ahg471036 jgi|Araly1|471036|fgenesh2_kg.1__990__AT1G09430.1 2350 0.0 > Ahg471036 jgi|Araly1|471036|fgenesh2_kg.1__990__AT1G09430.1 Length=1711 Score = 2350 bits (1272), Expect = 0.0 Identities = 1470/1563 (94%), Gaps = 23/1563 (1%) Strand=Plus/Plus Query 111 TGTTGAGGACGATCACTGTTTGTAATTCGATGGCGAGGAAGAAGATCAGAGAATATGACT 170 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 81 TGTTGAGGACGATCACTGTTTGTAATTCGATGGCGAGGAAGAAGATCAGAGAGTATGACT 140 Query 171 CCAAGAGACTTCTCAAGGAGCATTTGAAGCGTCTTGCTAATATTGACCTGCAGATTCGCT 230 ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| Sbjct 141 CCAAGAGACTTCTCAAGGAACATTTGAAGCGTCTCGCTAACATTGACCTGCAGATTCGCT 200 Query 231 CTGCTCAGGTGACAGAATCTACGGATTTCACTGAGTTAACCAACCAGGAGTCATGGCTAT 290 |||||||||||||||||||||| |||||||||||||| ||||||||| ||| |||||||| Sbjct 201 CTGCTCAGGTGACAGAATCTACTGATTTCACTGAGTTGACCAACCAGCAGTTATGGCTAT 260 Query 291 CGTCCACAAAGCTAGTTGTGAAACCGGATATGCTATTTGGGAAACGCGGGAAAAGTGGTT 350 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | Sbjct 261 CGTCCACAAAGCTAGTTGTGAAACCTGATATGCTATTTGGGAAACGCGGTAAAAGTGGCT 320 Query 351 TGGTAGCTCTAAAGCTGGATCTTGCTGAAGTTGCAGACTTTGTCAAAGCCCGCCTCGGCA 410 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 321 TGGTAGCTCTGAAGCTGGATCTTGCTGAAGTTGCAGAGTTTGTCAAAGCCCGCCTCGGTA 380 Query 411 CTGAGGTCGAGATGGAGGGATGTAAAGCACCTATCACTACATTCATTGTGGAGCCTTTTG 470 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 381 CTGAGGTTGAGATGGAGGGATGTAAAGCTCCTATCACTACATTCATTGTGGAGCCTTTTG 440 Query 471 TGCCTCATGATCAAGAATACTACCTCTCTATAGTATCTGATAGACTTGGATGCACTATAA 530 ||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||||| Sbjct 441 TGCCTCATGATCAAGAATACTACCTTTCTATACTATCTGATAGGCTTGGCTGCACTATAA 500 Query 531 GCTTCTCTGAATGTGGTGGCATTGAAATAGAAGAGAATTGGGACAAAGTGAAGACTATAT 590 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 501 GCTTCTCTGAATGTGGTGGCATTGAAATTGAAGAGAACTGGGACAAAGTGAAGACTATAT 560 Query 591 TTCTTCCTGCGGAAAAGTCGATGACGCTAGAAGTATGTGCTCCATTAATAGCAACTCTTC 650 ||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||| Sbjct 561 TTCTTCCTGCGGAGAAGTCAATGATGCTAGAAGTATGTGCTCCATTGATAGCAACTCTTC 620 Query 651 CTCTTGAGGTTCGAGCTAAAATCGGCAACTTCATAATGGGTGCCTTTGCTGTATTTCAAG 710 |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| Sbjct 621 CTCTTGAGGTTCGAGCTAAAATTGGTAACTTCATAATGGGTGCGTTTGCTGTATTTCAAG 680 Query 711 ATTTGGATTTCAGTTTTATGGAGATGAATCCTTTTACACTAGTCGATGGAGAACCATTCC 770 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 681 ATTTGGATTTCAGTTTTATGGAGATGAATCCTTTTACACTAGTCGATGGAGAGCCATACC 740 Query 771 CTCTGGATATGAGAGGAGAATTAGATGACACTGCTGCCTTCAAGAATTTCAACAAGTGGG 830 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 741 CTCTGGATATGAGGGGAGAGTTAGATGACACTGCTGCCTTCAAGAATTTCAACAAGTGGG 800 Query 831 GAGACATTGAATTTCCTCTGCCATTTGGAAGGGTCCTCAGTTCTACAGAGAACTTCATCC 890 ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct 801 GAGACATTGAATTTCCTCTACCATTTGGAAGGGTCCTCAGTTCGACGGAGAACTTCATCC 860 Query 891 ATGGTTTAGATGAGAAGACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCC 950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 861 ATGGTTTAGATGAGAAGACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCC 920 Query 951 GCATTTGGACGATGGTAGCTGGAGGTGGTGCTAGCGTCATATATGCTGATACAGTTGGGG 1010 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 921 GCATTTGGACGATGGTAGCTGGAGGTGGTGCTAGCGTCATATATGCTGATACAGTTGGGG 980 Query 1011 ATTTAGGTTATGCATCAGAGCTTGGAAACTACGCAGAGTATAGTGGAGCACCTAATGAGG 1070 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 981 ATTTAGGTTATGCATCAGAGCTCGGGAACTACGCAGAGTATAGTGGAGCACCTAATGAGG 1040 Query 1071 AAGAGGTGTTACAATATGCAAGAGTTGTCATTGATTGTGCCACTACTGATCCTGACGGGC 1130 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1041 AAGAGGTGTTACAATATGCAAGAGTTGTCATTGATTGTGCCACTGCTGATCCTGACGGGC 1100 Query 1131 GTAAACGAGCTCTTCTAATTGGAGGAGGCATTGCCAATTTCACTGATGTGGCAGCTACTT 1190 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1101 GTAAACGAGCTCTTCTAATTGGAGGAGGCATTGCCAACTTCACCGATGTGGCAGCTACTT 1160 Query 1191 TCAACGGTATCATTCGAGCGCTAAGAGAAAAGGAAACAAGATTGAAAGCATCAAGAATGC 1250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1161 TCAACGGTATCATTCGAGCGCTAAGAGAAAAGGAAACAAGATTGAAAGCATCAAGAATGC 1220 Query 1251 ACATTTACGTAAGGAGAGGTGGACCAAATTACCAGACTGGTTTGGCTAGAATGCGAGCTT 1310 ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1221 ACATTTATGTAAGGAGAGGTGGACCAAATTACCAGACTGGTTTGGCCAGAATGCGAGCTC 1280 Query 1311 TAGGAGAGGAACTTGGTGTCCCTCTAGAGGTATATGGTCCAGAGGCAACAATGACGGGAA 1370 | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1281 TGGGAGAGGAACTTGGTGTCCCTCTAGAGGTATATGGTCCAGAAGCAACGATGACGGGAA 1340 Query 1371 TATGCAAACGAGCCATTGACTGCATCATGTTGCCTGATGCATAACCTACCCAAACCTTTT 1430 ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 1341 TATGCAAACGAGCCATTGACTGCATCATGTTACCTGATGCATAACCAACCCAAACCTTTG 1400 Query 1431 ATCTCTTCTTCAGTTTGAAAGCAGAACAAAAGCTTTGGAGCTGGACGAATGAGTGAGTGT 1490 |||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||| Sbjct 1401 ATCTCTTCTTCAGTTTGAAAGCAGAATAAAAGCTTTGTAGCTGGATGTGTGAGTGAGTGT 1460 Query 1491 AAAATGAGTCATGTCCTTCATCTCTCTCTTTCCACATAAGAAAATGAAAATCTCTTTAAA 1550 ||| || ||| |||||||||||| || |||| |||||||||||||| ||||||| Sbjct 1461 GCGGTGATTCCTGTTCTTCATCTCTCT-TT-CCACGTAAGAAAATGAAAAGCTCTTTA-- 1516 Query 1551 ACtttttttCCACTGGGTGTGAATTTGAAAACTGTATCATTGTGT-GTAAGCGTAATTGT 1609 | || ||||||||||| ||||||||||||| ||||| |||||||| Sbjct 1517 --------------G--TGAGAATTTGAAAATTGTATCATTGTGTTGTAAGTGTAATTGT 1560 Query 1610 AATCAGACGGTCAAAATCCTTATTTTGAAATGTACAATAAGACTTCAAAAGTT-AATGTT 1668 ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 1561 AATCAAACGCTCAAAATCCTTATTT-GAAATGTACAATAAGACTTCAAAAGTTTAATGTC 1619 Query 1669 GCT 1671 ||| Sbjct 1620 GCT 1622 Score = 134 bits (72), Expect = 3e-30 Identities = 88/95 (93%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 1701 TCGCTCTACACACCAATCTATTATACTAATGTAAAG-GTTTGAAGACAAATCCAATTCC- 1758 ||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||| Sbjct 1618 TCGCTATACACACCAATCTATTATACTAATGTAA-GTGTTTCAAGACAAATCCAATTCCC 1676 Query 1759 ATATACAAACATGTCTATGTATACAATATATGTCA 1793 ||||||||||||||||||||||| ||||||| ||| Sbjct 1677 ATATACAAACATGTCTATGTATATAATATATATCA 1711 Score = 121 bits (65), Expect = 2e-26 Identities = 76/81 (94%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 1 TTGAGTTGGTGAGATCATCTTCTTCTCAACTTCATCGATCTTATCGTCTCGAAAATTGTC 60 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 1 TTGTGTTGATGAGATCATCTTCTGCTCAACTTCATCGATCTTATCGTCTCGAAAGTTGTC 60 Query 61 ACCTTTTCTTCTCAGCTACTT 81 ||||||| ||||||||||||| Sbjct 61 ACCTTTT-TTCTCAGCTACTT 80 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69019523940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5