BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09470.1
Length=1214
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471040 jgi|Araly1|471040|fgenesh2_kg.1__994__AT1G09470.1 1855 0.0
> Ahg471040 jgi|Araly1|471040|fgenesh2_kg.1__994__AT1G09470.1
Length=1187
Score = 1855 bits (1004), Expect = 0.0
Identities = 1109/1161 (96%), Gaps = 1/1161 (0%)
Strand=Plus/Plus
Query 38 CAGAAAATGCCAACTTCTGTTAGTCTAAGAGAGGATGATCCTTTGTTGAAGGATTTGAGT 97
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 27 CAGACAATGCCAACTTCTGTTAGTCTAAGAGAGGATGATCCTTTGTTGAAGGATCTGAGT 86
Query 98 GAGAAGAAGCAGAGTTTCAGGAGAAATGTGGTGTCTTTGGCCACTGAGTTGAAAGAAGCG 157
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 87 GAGAAGAAGCAGAGTTTCAGGAGAAATGTTGTGTCTTTGGCCACTGAGTTGAAAGAAGCG 146
Query 158 AGGACTCGTCTTGCGGAACAGGAGCGGTCGTGTTCAAAAGAAGCTATGTCCAGGCAGGAG 217
|||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 147 AGGACTCGTCTTGCGGAACAGGAGCGGTCGTGTTCACAAGAAGCCATGTCTAGGCAGGAG 206
Query 218 GCAGAAACAAGAGTTAAGAGAATGGAAGATGAAATGCATGAACTTGCCAAGGAACTAAAC 277
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 207 GCAGAAACAAGAGTTAAGAGAATGGAAGATGAAATGCATGAACTTGCTAAGGAACTAAAC 266
Query 278 GAGAAAGTTGAGCAGATTCGTGCTTCGGATGTTGCTACTGAGAAGTTTGTGAAGGAATTG 337
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 267 AAGAAAGTTGAGCAGATTCGTGCATCGGATGTTGCTACTGAGAAGTTTGTGAAGGAATTG 326
Query 338 GCTGATATCAAATCACAGCTAGCAGCAACACATGCAACTGCAGAGGCAAGTGCTTTGTCA 397
| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 327 GGTGATATCAAGTCACAGCTTGCAGCAACACATGCAACTGCAGAGGCAAGTGCTTTGTCA 386
Query 398 GCTGAATCAGCACATTCTCATTGTAGAGTGCTTTCGAAACAATTGCATGAGAGGACCGGT 457
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 387 GCTGAATCAGCACAGTCTCAGTGTAGAGTGCTTTCGAAACAATTGCATGAGAGGACCGGT 446
Query 458 TCTTTGAAAGAGCATGAGGACCAAGTAACTAGACTTGGTGAGCAGCTAGAGAATCTAAGA 517
|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 447 CCTTTAAAAGACCATGAGGACCAAGTTACTAGACTTGGTGAGCAGCTAGAGAATCTACGA 506
Query 518 AAGGAGCTGCGAGTTAGAGAATCTTCACAGAAGCAGCTAAGAGATGAGCTTTTGAAAGTT 577
|| ||||||| || |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 507 AATGAGCTGCAAGCTAGAGAATCTTCACAGAAGCAGCTAAGAGATGAGGTTTTGAAAGTT 566
Query 578 GAAGGTGACATTATGCGGGCTGTATCAGTGGTCAAGACCAAGGAGAACTCTGAGGTGCGG 637
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 567 GAAGGTGACATTATGCGGGCTCTATCAGTGGTCAAGACCAAGGAGAATTCTGAGGTGCGG 626
Query 638 AACATGCTAAATGAAGATACTCCAAAGAATTCTGAAAGAATCAACAAACTTTTGACGGCT 697
|| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 627 AAAATGCTAAATGAAGATCCTCCAAAGAATTTTGAAAGAATCAACAAACTTTTGACGGCT 686
Query 698 AAAGATGATGAAATTGCAAGACTGAGAGATGAACTGAAGATTATATCGGCTCACTGGAGG 757
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 687 AAAGATGATGAAATTGCAAGACTCAGAGATGAACTAAAGATTATATCGGCTCATTGGAGG 746
Query 758 TTTAAGACCAAGGAATTAGAAGATCAGGTGGAGAATCAAAGGAGAATTGATCAGGAGCTG 817
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 747 TTTAAGACAAAGGAATTAGAAGATCAGGTGGAGAATCAAAGGAGAATCGATCAGGAGCTG 806
Query 818 AAGAAGAAGGTGCTGAAGTTAGAATTTTGCCTACGAGAAACACGCATCCAAACTCGAAAA 877
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 807 AAGAAGAAGGTGCTGAAGTTAGAATTTTGCTTACGCGAAACACGCATCCAAACTCGAAAA 866
Query 878 CTTCAAAAGATGGGAGAGCGAAACGATGTGGCAATACAAGAACTCAAGGAGCAATTGGCT 937
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 867 CTTCAAAAGATGGGAGAGCGAAACGATGTAGCAATACAAGAACTCAAGGAGCAATTGGCT 926
Query 938 GCaaaaaaaCAGCATGAAGCTGATCATTCTAGCAACCAAAACTTGTGGGACAAATCAGGT 997
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 927 GCAAAAAAACAGCATGAAGCTGATCTTTCTAGCAACCAAAACTTGTGGGATAAATCAGGT 986
Query 998 TTCAAGATTGTTGTCTCCATGTCAATGCTGATATTAGTTGCGTTTTCTAGGCGTTGAATT 1057
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 987 TTCAAGATTGTTGTCTCCATGTCGATGCTGATATTAGTTGCCTTTTCTAGGCGTTGAATT 1046
Query 1058 AGCGATGAAATCATTTTAGATCATATTAAAATAGTTAGACAGTACCCTCCAGTGTATGAA 1117
||| |||||| ||||||||||||||||||| ||| ||||| ||| ||| ||||||||| |
Sbjct 1047 AGCAATGAAAACATTTTAGATCATATTAAAGTAGATAGACCGTATCCTACAGTGTATGGA 1106
Query 1118 GGATTAAGAT-ACACCTCTTTGTTACAATGTCTGAGTTTCCGCTTTTGGTCCTAAAGAGA 1176
||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 GGAATAATATTACACCTCTTTGTTACAATGTCTGAGTTTCCGCTTTTGGTCCTAAAGAGA 1166
Query 1177 TATATTTAAAACAAATCAACC 1197
||||||||||||||| |||||
Sbjct 1167 TATATTTAAAACAAAACAACC 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45328148313
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5