BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09750.1
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471076 jgi|Araly1|471076|fgenesh2_kg.1__1030__AT1G09750.1 2170 0.0
> Ahg471076 jgi|Araly1|471076|fgenesh2_kg.1__1030__AT1G09750.1
Length=1504
Score = 2170 bits (1175), Expect = 0.0
Identities = 1315/1383 (95%), Gaps = 7/1383 (1%)
Strand=Plus/Plus
Query 15 TCTACACAATCACATTA-GCCAAAACCATGGCCTCCTCAAGTCTCCA--T-TTCTTCTTC 70
||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 1 TCTACACAATCACATTATCCCAAAACCATGGCCTCCTCAAGTCTCCATTTCTTCTTCTTC 60
Query 71 TTCTTGACACTTCTCTTGCCATTCACTTTCACCACCGCCACACGTGACACATGTGCGACC 130
|||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| ||
Sbjct 61 TTCTTGACACTTCTCTTGCCGTTCACTCTCACCACCGCCACACGTGACACTTGTGCTACA 120
Query 131 GCCGCTCCCGATGGTTCCGACGACCTCTCAATCATCCCCATTAACGCCAAATGCTCACCT 190
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GCCGCTCCCGACGGCTCCGACGACCTCTCAATCATCCCCATTAACGCTAAATGCTCACCT 180
Query 191 TTCGCACCCACTCACGTCTCTGCCTCCGTGATAGACACGGTCCTTCACATGGCCTCCTCA 250
||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 TTCGCACGCTCTCACGTCTCTGCCTCCGTGATAGACACCGTCCTCCACATGGCCTCCTCA 240
Query 251 GACTCCCATCGACTCACCTACCTCTCAAGCCTCGTCGCCGGCAAACCAAAACCCACCTCC 310
|||||||| || |||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 GACTCCCACCGGTTCACCTACCTCTCAAGCCTCGTCGCCGGAAAACCAAAACCAACCTCC 300
Query 311 GTCCCCGTCGCCTCCGGTAATCAGCTCCACATCGGAAACTACGTGGTCCGAGCCAAACTC 370
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GTCCCCGTCGCCTCCGGTAACCAGCTCCACATCGGAAACTACGTGGTCCGAGCCAGACTC 360
Query 371 GGCACTCCTCCACAGCTAATGTTCATGGTCCTAGACACAAGTAACGACGCCGTTTGGCTC 430
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGCACTCCTCCACAGCTCATGTTCATGGTCCTAGACACAAGTAACGACGCCGTTTGGCTC 420
Query 431 CCTTGCTCCGGCTGCTCCGGTTGTTCCAACGCCTCAACTTCTTTCAATACAAACTCCTCA 490
||||||||||||||||| || ||||||||||||||||| || |||||||| ||||||||
Sbjct 421 CCTTGCTCCGGCTGCTCTGGCTGTTCCAACGCCTCAACCTCCTTCAATACGAACTCCTCC 480
Query 491 TCCACTTACTCAACCGTCTCTTGCTCCACCGCACAATGCACCCAAGCACGTGGCCTCACG 550
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TCCACTTACTCAACCGTCTCTTGCTCCACCGCACAATGCACACAAGCACGTGGCCTCACG 540
Query 551 TGCCCATCCTCCTCACCACAACCGTCCGTCTGCTCCTTCAACCAATCCTACGGCGGAGAT 610
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 541 TGCCCATCCTCCTCACCACAACCGTCCATCTGCTCATTCAACCAATCCTACGGCGGAGAT 600
Query 611 TCATCCTTCTCTGCCAGTCTCGTCCAAGACACGCTAACGTTAGCCCCTGACGTCATCCCA 670
||||||||||| |||| |||||||||||||||||| ||| || |||||||||||||||||
Sbjct 601 TCATCCTTCTCCGCCAATCTCGTCCAAGACACGCTGACGCTATCCCCTGACGTCATCCCA 660
Query 671 AATTTCTCCTTCGGCTGCATCAACTCCGCCTCAGGCAATTCTCTACCACCGCAAGGACTA 730
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 661 AATTTCTCCTTCGGCTGCATCAACTCTGCCTCAGGCAATTCTCTACCTCCACAAGGACTA 720
Query 731 ATGGGCCTAGGACGCGGGCCTATGTCATTGGTCTCTCAAACTACGTCGCTTTACTCAGGA 790
|||||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 721 ATGGGCCTGGGACGCGGGCCCATGTCGTTGGTCTCCCAAACGACGTCACTTTACTCAGGA 780
Query 791 GTGTTCTCATACTGCCTCCCTAGCTTCAGGTCCTTCTACTTCTCCGGGTCGTTGAAACTG 850
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 GTGTTCTCCTACTGCCTCCCTAGCTTCAGGTCATTCTACTTCTCCGGGTCGTTGAAACTG 840
Query 851 GGTCTCTTGGGTCAACCCAAATCCATCAGATACACTCCACTCCTCCGTAACCCTCGCCGT 910
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GGTCTCCTGGGTCAACCCAAATCCATCAGATACACTCCACTCCTCCGTAATCCTCGCCGT 900
Query 911 CCATCACTTTACTATGTGAATCTCACCGGAGTGAGTGTCGGTTCCGTCCAGGTACCCGTT 970
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 CCATCACTTTACTATGTCAATCTCACCGGAGTGAGTGTCGGTTCCGTCCAGGTGCCCGTT 960
Query 971 GACCCAGTGTATTTGACGTTTGACGCAAATTCCGGCGCCGGTACGATCATCGATTCCGGT 1030
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 961 GACCCAGTGTATTTGACGTTTGACTCGAATTCCGGCGCCGGAACGATCATCGATTCCGGT 1020
Query 1031 ACTGTTATCACCCGTTTTGCTCAACCCGTGTACGAAGCCATTAGAGACGAGTTTAGGAAG 1090
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1021 ACTGTTATCACCCGTTTTGCTCAACCCGTTTACGAGGCCATTAGAGACGAGTTTAGGAAG 1080
Query 1091 CAGGTGAATGTGTCGTCATTCTCAACATTGGGAGCGTTTGACACGTGTTTCTCAGCGGAT 1150
|||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1081 CAGGTGAATG-G--GTCATTCTCAACATTGGGAGCGTTTGACACGTGTTTCTCGGCGGAT 1137
Query 1151 AACGAGAATGTGGCGCCAAAGATAACGCTGCACATGACGTCACTCGACTTGAAGCTGCCG 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AACGAGAATGTGGCGCCAAAGATAACGCTGCACATGACGTCACTCGACTTGAAGCTGCCG 1197
Query 1211 ATGGAGAATACGCTTATCCACAGCAGCGCGGGAACGCTGACGTGTCTATCCATGGCCGGG 1270
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1198 ATGGAGAATACGCTCATCCACAGCAGCGCGGGAACGCTGACGTGTCTATCCATGGCGGGG 1257
Query 1271 ATACGGCAGAACGCAAACGCTGTTCTAAACGTGATCGCGAATCTCCAACAGCAGAACTTA 1330
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1258 ATACGGCAGAACGCGAACGCTGTTCTAAACGTGATCGCTAATCTCCAACAGCAGAACTTA 1317
Query 1331 AGGATCTTGTTTGACGTTCCTAATTCTCGCATAGGAATTGCTCCTGAGCCCTGCAACTAA 1390
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1318 AGGATCTTGTTTGACGTTCCTAATTCTCGCTTAGGAATTGCTCCTGAGCCCTGCAACTAA 1377
Query 1391 GAG 1393
|||
Sbjct 1378 GAG 1380
Score = 134 bits (72), Expect = 3e-30
Identities = 80/84 (95%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 1478 TTGACCTTCTACATATACTTTGTATGAACGGCTATCTTCACTACGCATAACATGGCCTGC 1537
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1421 TTGACCTTCCACATATACTTTGTATGTACGGCTATCTTCACTACGCATAACATGGCCTGC 1480
Query 1538 AGTTTCATCTCTTGCTTCAGCGAT 1561
|||||||||||||||| ||| |||
Sbjct 1481 AGTTTCATCTCTTGCTCCAGAGAT 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59116060240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5