BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09850.1 Length=1638 Score E Sequences producing significant alignments: (Bits) Value Ahg471096 jgi|Araly1|471096|fgenesh2_kg.1__1050__AT1G09850.1 2490 0.0 > Ahg471096 jgi|Araly1|471096|fgenesh2_kg.1__1050__AT1G09850.1 Length=1641 Score = 2490 bits (1348), Expect = 0.0 Identities = 1552/1648 (94%), Gaps = 24/1648 (1%) Strand=Plus/Plus Query 8 CCAAAACTATCTCCACGATTCTAACAAACAAA-AATTACAG--AAATGTCAATGTCATCG 64 |||||||||||||||||||||||| ||| ||| || ||||| ||||||||||||||||| Sbjct 1 CCAAAACTATCTCCACGATTCTAA-AAA-AAATAA-TACAGAAAAATGTCAATGTCATCG 57 Query 65 tcctcctttatctctctcactttcttcttccttcttctcgtttcttcatcgtcatcttcc 124 ||||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||| Sbjct 58 TCCTCCTTTGTCTCTCTCACTTTCTTCTTCCTTTTTCTCGTTTCTTCACCTTCATCTTCC 117 Query 125 gatgacatctctGAGCTATTCGACGACTGGTGCCAGAAACATGGCAAAACGTACGGTTCA 184 ||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||| Sbjct 118 GATGACATCTCCGAGCTGTTCGACGACTGGTGCCAGAGACATGGCAAAACTTACGGTTCA 177 Query 185 GAAGAAGAGAGGCAACAGAGGATTCAAATCTTTAAAGATAATCACGACTTCGTTACGCAA 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 178 GAAGAAGAGAGGCAACAGAGGATTCAAATCTTTAAAGATAATCACGACTTCGTTACCCAA 237 Query 245 CACAATCTCATCACTAACGCTACTTActctctctctctcAATGCTTTCGCGGATCTGACT 304 ||||||| ||||||||| |||||||| || |||||||||||||| ||||||||||||||| Sbjct 238 CACAATCGCATCACTAATGCTACTTATTCCCTCTCTCTCAATGCCTTCGCGGATCTGACT 297 Query 305 CACCACGAGTTCAAGGCTTCTCGTCTTGGTCTCTCTGTTTCCGCTCCGTCGGTGATAATG 364 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 298 CACCACGAGTTCAAGGCTTCTCGTCTTGGACTCTCTGTTTCCGCTCCGTCGGTGATAATG 357 Query 365 GCTAGTAAGGGACAGAGTCTCGGTGGTAGCGTAAAGGTTCCAGATTCTGTTGATTGGAGA 424 |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 358 GCTAGTAAGGGACAGAGTCTGGGTGGTAGCGCAAAGGTTCCAGATTCTGTTGATTGGAGG 417 Query 425 AAGAAGGGAGCTGTTACTAATGTCAAAGATCAAGGAAGCTGCGGGGCATGTTGGTCGTTC 484 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 AAGAAAGGAGCTGTTACTAATGTCAAAGATCAAGGAAGCTGCGGGGCATGTTGGTCGTTC 477 Query 485 TCGGCGACTGGAGCTATGGAGGGAATTAACCAGATAGTAACAGGAGATCTCATCAGCCTC 544 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 478 TCGGCGACTGGAGCTATGGAGGGAATCAACCAGATTGTAACAGGAGATCTCATCAGCCTC 537 Query 545 TCTGAGCAGGAACTGATTGATTGTGACAAGTCCTACAATGCTGGCTGTAATGGTGGTCTC 604 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 538 TCTGAGCAGGAACTGGTTGATTGTGACAAGTCCTACAATGCTGGCTGCAATGGTGGTCTC 597 Query 605 ATGGACTATGCTTTTGAATTTGTCATTAAAAACCATGGAATAGACACAGAGAAAGACTAT 664 |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| Sbjct 598 ATGGACTATGCTTTCGAATTCGTCATAAAAAACCATGGTATAGACACAGAGAAAGACTAT 657 Query 665 CCTTATCAAGAACGTGATGGCACCTGTAAGAAGGATAAGTTGAAACAAAAGGTTGTGACA 724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 CCTTATCAAGAACGTGATGGCACCTGTAAGAAGGATAAGTTGAAACAAAAGGTTGTGACA 717 Query 725 ATTGATAGCTATGCTGGTGTAAAATCAAATGATGAGAAAGCGTTAATGGAGGCTGTAGCG 784 |||||||||||||||||||||||||| ||||| |||||||| |||| |||||||||||| Sbjct 718 ATTGATAGCTATGCTGGTGTAAAATCCAATGACGAGAAAGCCTTAAGGGAGGCTGTAGCA 777 Query 785 GCTCAGCCAGTTAGTGTTGGCATCTGTGGAAGCGAGAGAGCGTTTCAGCTATATTC---- 840 ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 778 GCTCAGCCAGTAAGTGTTGGCATTTGTGGAAGCGAGAGAGCGTTTCAGTTATATTCGAGG 837 Query 841 -T-AGTGGAATATTCTCTGGCCCGTGTTCGACATCATTGGATCATGCTGTGCTCATAGTA 898 | |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 838 GTGAGTGGAATATTCTCCGGCCCGTGTTCCACATCATTGGATCACGCTGTGCTCATAGTA 897 Query 899 GGATATGGTTCACAGAATGGTGTTGATTATTGGATTGTGAAAAACTCATGGGGAAAAAGT 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 GGATATGGTTCACAGAATGGTGTTGATTATTGGATTGTGAAAAACTCATGGGGAAAAAGT 957 Query 959 TGGGGAATGGATGGGTTTATGCACATGCAGCGTAACACTGAAAATTCAGACGGCGTT-TG 1017 |||||||||||||||||||||||||||||||||||||| | |||||||| || | | || Sbjct 958 TGGGGAATGGATGGGTTTATGCACATGCAGCGTAACACCGGGAATTCAGAAGG-GATATG 1016 Query 1018 CGGAATCAACATGCTTGCTTCATATCCCATCAAGACACATCCAAACCCGCCTCCACCGTC 1077 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1017 CGGAATCAATATGCTTGCTTCATATCCCATCAAGACACATCCAAACCCGCCTCCACCATC 1076 Query 1078 CCCTCCTGGCCCTACAAAATGCAACCTTTTCACGTATTGTTCATCTGGAGAGACTTGTTG 1137 |||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 1077 CCCTCCTGGCCCCACAAAATGCAACCTTTTCACCTATTGTTCAGCTGGAGAGACTTGTTG 1136 Query 1138 CTGTGCAAGAGAA-TTGTTTGGTTTATGCTTCTCATGGAAATGCTGCGAGATAGAATCCG 1196 |||||||||| || |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1137 CTGTGCAAGA-AACTTGTTTGGTTTATGTTTTTCATGGAAATGCTGCGAGATAGAATCCG 1195 Query 1197 CTGTGTGTTGCAAG-GATGGTCGTCATTGTTGTCCACATGATTACCCTGTTTGTGATACA 1255 |||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1196 CTGTGTGTTGCA-GCGATGGTCGTCATTGTTGTCCACATGATTACCCGGTTTGTGATACA 1254 Query 1256 ACCAGAAGTCTCTGCCTTAAGAAAACTGGTAATTTCACTGCGATCAAGCCCTTCTGGAAG 1315 ||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||| Sbjct 1255 ACCAGAAGTCTATGCCTTAAGAAAACCGGTAATTTCACGGCGATCAAGCCTTTCTGGAAG 1314 Query 1316 AAGAATTCTTCAAA-ACAACTTGGCCGATTTGAGGAATGGGTTATGTGAGAGAAGTTTTA 1374 ||| |||||||||| | |||||||| |||||||||||||||||||||||||||| ||||| Sbjct 1315 AAGGATTCTTCAAATA-AACTTGGCAGATTTGAGGAATGGGTTATGTGAGAGAATTTTTA 1373 Query 1375 CGCACATGTTACAGAAAATTCAAACTCATCCATACAAAAACCTCGTAGATTCGATTAT-- 1432 |||| ||||||||||| ||||||||||||||||||||||||| ||| |||||||||| Sbjct 1374 CGCATATGTTACAGAACTTTCAAACTCATCCATACAAAAACCTTGTAAATTCGATTATAT 1433 Query 1433 --CTGCGAGGGGATTATTTGTAGCTGTTATTGAGATAGATATATACGATATCATCACGGA 1490 |||||||||| ||||||||||||||| |||||||| | ||||| |||||||||||||| Sbjct 1434 ATCTGCGAGGGGGTTATTTGTAGCTGTTGTTGAGATATAAATATATGATATCATCACGGA 1493 Query 1491 TGTATTTTTAGTCTCTCATTTGGATGTATACAACTTCTGAGTCAATAAAGGACACTTGCA 1550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 TGTATTTTTAGTCTCTCATTTGGATGTATACAACTTCTGAGTCAATAAAGGACACTTGCA 1553 Query 1551 GGACAAGCACAGTATTTGTATCTGCAAGACACATAAAGTAATAAGAGTATCATCTATGTA 1610 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1554 GGACAAACACAGTATTTGTATCTGCAAGGCACATAAAGTAATAAGAGTATCATCTATGTA 1613 Query 1611 TATTATAGAGAGACTAAGCTTCACTGTT 1638 |||| |||||||| |||||||||||||| Sbjct 1614 TATTGTAGAGAGATTAAGCTTCACTGTT 1641 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61401474940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5