BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G09920.1

Length=968
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312033 jgi|Araly1|312033|fgenesh1_pm.C_scaffold_1000813           418    4e-116


> Ahg312033 jgi|Araly1|312033|fgenesh1_pm.C_scaffold_1000813
Length=540

 Score =  418 bits (226),  Expect = 4e-116
 Identities = 287/313 (92%), Gaps = 17/313 (5%)
 Strand=Plus/Minus

Query  554  TCTGTTATCAATGCAACAGCTATGTTAGATTGAGAGAAAGATATAACCATGAAACCAAAT  613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  TCTGTTATCAATGCAACAGCTATGTTAGATTGAGAGAAAGATATAACCATGAAACCAAAT  237

Query  614  GCCCTGGCACTGTTGAATCATCCAGAAGGATCCCGAGAGCAGCAGAAGGAGATGGAAACG  673
            |  |   | |||  |   ||   |||||||||||||||||||||||||||||||||||||
Sbjct  236  G--C---C-CTG--G---CA---AGAAGGATCCCGAGAGCAGCAGAAGGAGATGGAAACG  191

Query  674  GGAGAAGACGAAGAGATGGGAACGGTGTTTCGAACAAAAGGCTTTTCTTCACGATAGCAA  733
            ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct  190  GGAGAAGACGAAGAGATGGAAACGGTGTTTCGCACAAAAGGCTTTTCTTCACGATAGCAA  131

Query  734  TAACGGGAATAGCTGTGATAATAGGATCCTTGTTCTTCCAGAGGAAGCCTGAGTAGAGGA  793
            ||||||||||||||||  | |||||||| |||||||||||||||||||||||||||||| 
Sbjct  130  TAACGGGAATAGCTGTCTTCATAGGATCGTTGTTCTTCCAGAGGAAGCCTGAGTAGAGG-  72

Query  794  GGCGTAGCTTATCTGTAATTCTGTAAATTTGCCTCAAATCCTTCAGACAGATTCTAAGGA  853
              | |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  71   --CATAGCTTATGTGTAATTCTGTAAATTTGTCTCAAATCCTTCAGACAGATTCTAAGGA  14

Query  854  AGGGTTTATACAT  866
            |||||||||||||
Sbjct  13   AGGGTTTATACAT  1


 Score =  243 bits (131),  Expect = 2e-63
 Identities = 137/140 (98%), Gaps = 0/140 (0%)
 Strand=Plus/Minus

Query  390  GATAGCATGCTCGATGTGCAAAGAGACCATAGAACGTGAGATTTTCGATAGTCATAAAGG  449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  499  GATAGCATGCTCGATGTGCAAAGAGACCATAGAACGTGAGATTTTCGATAGTCATAAAGG  440

Query  450  AGAAATTTGCCCCAAGAGGATTGTAACATGCGAGTTCTGTGAGTTTCCATTGCCTGCGGT  509
            |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  439  AGAAATATGCCCCAAGAGGATTGTAACATGTGAGTTCTGTGAGTTTCCATTGCCTGCGGT  380

Query  510  TGATCTTGCCGAGCATCAGG  529
            ||||||||| ||||||||||
Sbjct  379  TGATCTTGCTGAGCATCAGG  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35949910731


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5