BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09920.1 Length=968 Score E Sequences producing significant alignments: (Bits) Value Ahg312033 jgi|Araly1|312033|fgenesh1_pm.C_scaffold_1000813 418 4e-116 > Ahg312033 jgi|Araly1|312033|fgenesh1_pm.C_scaffold_1000813 Length=540 Score = 418 bits (226), Expect = 4e-116 Identities = 287/313 (92%), Gaps = 17/313 (5%) Strand=Plus/Minus Query 554 TCTGTTATCAATGCAACAGCTATGTTAGATTGAGAGAAAGATATAACCATGAAACCAAAT 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TCTGTTATCAATGCAACAGCTATGTTAGATTGAGAGAAAGATATAACCATGAAACCAAAT 237 Query 614 GCCCTGGCACTGTTGAATCATCCAGAAGGATCCCGAGAGCAGCAGAAGGAGATGGAAACG 673 | | | ||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 236 G--C---C-CTG--G---CA---AGAAGGATCCCGAGAGCAGCAGAAGGAGATGGAAACG 191 Query 674 GGAGAAGACGAAGAGATGGGAACGGTGTTTCGAACAAAAGGCTTTTCTTCACGATAGCAA 733 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 190 GGAGAAGACGAAGAGATGGAAACGGTGTTTCGCACAAAAGGCTTTTCTTCACGATAGCAA 131 Query 734 TAACGGGAATAGCTGTGATAATAGGATCCTTGTTCTTCCAGAGGAAGCCTGAGTAGAGGA 793 |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| Sbjct 130 TAACGGGAATAGCTGTCTTCATAGGATCGTTGTTCTTCCAGAGGAAGCCTGAGTAGAGG- 72 Query 794 GGCGTAGCTTATCTGTAATTCTGTAAATTTGCCTCAAATCCTTCAGACAGATTCTAAGGA 853 | |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 71 --CATAGCTTATGTGTAATTCTGTAAATTTGTCTCAAATCCTTCAGACAGATTCTAAGGA 14 Query 854 AGGGTTTATACAT 866 ||||||||||||| Sbjct 13 AGGGTTTATACAT 1 Score = 243 bits (131), Expect = 2e-63 Identities = 137/140 (98%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 390 GATAGCATGCTCGATGTGCAAAGAGACCATAGAACGTGAGATTTTCGATAGTCATAAAGG 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 499 GATAGCATGCTCGATGTGCAAAGAGACCATAGAACGTGAGATTTTCGATAGTCATAAAGG 440 Query 450 AGAAATTTGCCCCAAGAGGATTGTAACATGCGAGTTCTGTGAGTTTCCATTGCCTGCGGT 509 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 439 AGAAATATGCCCCAAGAGGATTGTAACATGTGAGTTCTGTGAGTTTCCATTGCCTGCGGT 380 Query 510 TGATCTTGCCGAGCATCAGG 529 ||||||||| |||||||||| Sbjct 379 TGATCTTGCTGAGCATCAGG 360 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35949910731 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5