BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09960.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471107 jgi|Araly1|471107|fgenesh2_kg.1__1061__AT1G09960.1 2926 0.0
> Ahg471107 jgi|Araly1|471107|fgenesh2_kg.1__1061__AT1G09960.1
Length=1935
Score = 2926 bits (1584), Expect = 0.0
Identities = 1824/1938 (94%), Gaps = 24/1938 (1%)
Strand=Plus/Plus
Query 50 CTACTTCCGATCAAGATCGCCGTCACAGAGTCACTCGCAACCGTCCACCAATAGCTCGAC 109
||||| |||||||||||||||| ||||||| ||||||||||||||||||| || ||||||
Sbjct 8 CTACTCCCGATCAAGATCGCCGCCACAGAGCCACTCGCAACCGTCCACCACTACCTCGAC 67
Query 110 CCTCTACTTCTTCATCTCGTCCCGTTGTATCTCCTCCTAGATCAAAAGTTTCGAAGCGTG 169
||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||
Sbjct 68 CCTCTACTTCTTCATCTCGTCCCGTTGTAGCTCCT-C--GATCAAAAGTATCGAAGCGTG 124
Query 170 TGCTTCTCCGTGTAGCTTCCGTCGCATGCGGGATTCAATTCGGATGGGCTCTTCAGCTTT 229
| ||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 125 TACTTCTCCGTGTTGCTTCCGTCGCTTGTGGGATTCAATTCGGATGGGCGCTTCAGCTTT 184
Query 230 CTCTCCTCACACCTTACGTTCAAGAGCTGGGGATCCCACACGCTTGGGCTAGTGTGATTT 289
| || |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 185 CGCTTCTCACACCTTACGTCCAAGAGCTAGGGATTCCACACGCTTGGGCTAGTGTGATTT 244
Query 290 GGCTTTGCGGTCCTCTCTCTGGTTTGTTCGTGCAACCGCTCGTTGGGCATAGTAGCGATA 349
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 245 GGCTCTGCGGTCCTCTCTCTGGTTTGTTCGTGCAACCGCTCGTTGGACATAGTAGCGATA 304
Query 350 GGTGTACTAGTAAGTACGGTCGTCGGAGACCGTTTATTGTCGCCGGAGCTGTGGCGATTT 409
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 305 GGTGTACTAGCAAGTACGGTCGTCGGAGACCGTTTATTGTCGTTGGAGCTGTGGCGATTG 364
Query 410 CTATCTCTGTTATGGTTATTGGTCATGCGGCGGATATTGGATGGGCATTTGGGGATAGAG 469
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 365 CTATCTCTGTTTTGGTTATTGGTCATGCGGCGGATATTGGATGGGCTTTTGGGGATAGAG 424
Query 470 AAGGGAAGATTAAGCCGAGGGCGATTGTTGCTTTTGTTTTAGGGTTTTGGATTCTTGATG 529
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 425 AAGGGAAGATTAAGCCGAGGGCGATTGTGGCTTTTGTTTTAGGGTTTTGGATTCTTGATC 484
Query 530 TTGCTAATAATATGACTCAAGGTCCTTGTAGAGCTCTCCTTGCTGATCTTACTGAGAATG 589
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 485 TTGCTAATAACATGACTCAAGGTCCTTGTAGAGCTCTCCTCGCCGATCTTACTGAGAATG 544
Query 590 ATAATCGCAGAACCCGAGTTGCAAATGGCTACTTCTCTCTCTTTATGGCTGTTGGCAATG 649
||||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||||
Sbjct 545 ATAATCGCAGAACCCGAGTGGCAAATGGCTATTTCTCTCTGTTTATGGCTATTGGCAATG 604
Query 650 TTCTTGGCTATGCTACTGGATCATACAATGGTTGGTACAAGATCTTCACTTTTACGAAGA 709
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 605 TTCTTGGTTATGCTACTGGATCATTCAATGGTTGGTACAAGATCTTCACTTTTACGAAGA 664
Query 710 CAGTTGCATGTAATGTGGAATGTGCCAATCTCAAGTCTGCCTTCTACATAGATGTTGTCT 769
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 665 CAGTTGCATGTAATGTGGAATGTGCCAATCTCAAGTCTGCTTTCTACATAGATGTCGTCT 724
Query 770 TTATTGCAATAACTACGATCCTAAGCGTCTCAGCGGCTCATGAGGTGCCACTTGCTTCAT 829
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 725 TTATTGCAATAACTACGATCCTAAGCGTCTCAGCGGCTCATGAGGTGCCTCTTGCTTCAT 784
Query 830 TGGCTTCTGAAGCACATGGGCAAACCAGTGGAACAGACGAAGCTTTTCTTTCTGAGATAT 889
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 785 TGACTTCTGAAGCACATGGGCAAACCAGTGGAACAGACGAAGCTTTTCTTTCTGAAATAT 844
Query 890 TTGGAACTTTCAGATATTTTCCAGGAAATGTTTGGATAATCTTGCTTGTTACAGCATTGA 949
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 845 TTGGAACTTTCAGATATTTTCCAGGGAATGTTTGGATAATCTTGCTTGTTACAGCATTGA 904
Query 950 CATGGATTGGTTGGTTTCCATTTATTCTGTTTGATACTGATTGGATGGGTCGAGAGATCT 1009
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 905 CATGGATTGGTTGGTTTCCATTTATTCTGTTTGATACTGACTGGATGGGTCGAGAGATCT 964
Query 1010 ATGGCGGTGAACCGAACATAGGGACTTCATATAGTGCTGGGGTCAGTATGGGTGCACTTG 1069
|||||||||||||||||||||| ||||| |||||||| || || |||||||| || ||||
Sbjct 965 ATGGCGGTGAACCGAACATAGGTACTTCTTATAGTGCCGGAGTTAGTATGGGCGCTCTTG 1024
Query 1070 GTTTGATGTTGAATTCTGTTTTTCTTGGAATCACTTCTGTGCTCATGGAGAAACTTTGCA 1129
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1025 GTTTGATGTTGAATTCTGTTTTTCTTGGAATCACTTCGGTGCTCATGGAGAAGCTTTGCA 1084
Query 1130 GAAAGTGGGGGGCTGGTTTTGTTTGGGGAATATCAAATATCTTAATGGCTATTTGCTTTC 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GAAAGTGGGGGGCTGGTTTTGTTTGGGGAATATCAAATATCTTAATGGCTATTTGCTTTC 1144
Query 1190 TTGGAATGATAATCACCTCATTTGTTGCGTCTCACCTTGGCTACATTGGCCATGAACAAC 1249
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1145 TTGGAATGATTATCACCTCATTTGTTGCGTCTCATCTTGGCTACATTGGCCATGAACAAC 1204
Query 1250 CTCCTGCCAGCATCGTGTTTGCTGCTGTGTTAATCTTTACAATTCTGGGCATTCCATTGG 1309
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 CTCCTGCCAGCATCGTATTTGCTGCTGTGTTAATCTTTACAATTCTGGGCATTCCATTGG 1264
Query 1310 CGATAACTTACAGCGTCCCATATGCGTTGATTTCCATACGTATTGAATCCCTGGGCTTAG 1369
| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1265 CAATAACTTACAGTGTCCCATATGCGTTGATTTCCATACGTATAGAATCTTTGGGCCTAG 1324
Query 1370 GTCAAGGCTTATCTTTGGGTGTGCTAAATTTGGCGATAGTCATCCCACAGGTAATTGTGT 1429
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1325 GTCAAGGCTTATCTTTGGGTGTGCTGAATTTGGCGATAGTCATCCCACAGGTAATTGTGT 1384
Query 1430 CTGTTGGCAGTGGCCCATGGGATCAACTGTTTGGAGGTGGGAATTCACCGGCACTTGCAG 1489
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1385 CTGTTGGCAGTGGCCCATGGGATCAACTGTTTGGAGGTGGGAATTCACCGGCGCTTGCAG 1444
Query 1490 TAGGAGCAGCTACAGGCTTCATTGGCGGAATTGTAGCTATCTTGGCTCTTCCACGGACAA 1549
||||||||||| |||| |||||||| ||||||||||| |||||||||||||| || ||||
Sbjct 1445 TAGGAGCAGCTGCAGGTTTCATTGGTGGAATTGTAGCCATCTTGGCTCTTCCCCGAACAA 1504
Query 1550 GGATTCAGAAGCCCATCCCTCTCCCATGAGATTCTCTCTTTTGTTATA---TAAGATGAG 1606
||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 1505 GGATTCAGAAGCCCATCCCTCTCCCATGACATCCTCTCTTTTGTTATAAGGTAAGATGAG 1564
Query 1607 TGTCAAGCGAGGAACGCATAAGGGGAGTGCTTGGAAA-TGGCAAGGAGATGGAACACTTA 1665
| |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 1565 TTTCAAGCGAGGAACGCATAAGGGGAGTACT-GGAAAATGGCAAGGAGATGGAACACTTA 1623
Query 1666 ATGTGATCCTTGTCGAAAATTCGTGCAATGGCTTCTCGTGTGACT-AACTTATTTGCAGC 1724
||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1624 ATGTGATCCTTGTCGAA--TTCATGCAATGGCTTCTCGTGTGACTTAACTTATTTGCAGC 1681
Query 1725 TACTAGGACTTAATCCCCTCTACTTTGGGGACTATGATCCTTGTATACACGAGGCA-CCA 1783
||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 1682 TACTAGGACTTAATCTCCTCTACTTTGGGGACTATGATCCTTGTATCCACGAGG-AGCCA 1740
Query 1784 TAGAACCAATGAAAATAATACATCATTCAGTTTGTGAGGTATATGCATCTCTCCTTTATT 1843
|| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1741 TATAACCAATGAAA-TAAAACATCATTCAGTTTGTGAGGTATATGCAT-TCTCCTTTGTT 1798
Query 1844 GGAAGTTCCAGTTCGGGATCTTCTCTGttttttttGTTGTTGTTGTAAATTAATGTAAAA 1903
|||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 1799 GGAAGTCCCAATTCGGGATCTTCTCTGTTTTTGTTGTTGTTGTTGTAACTTAATGTGAAA 1858
Query 1904 ACCTGTGTACAACAGAGTGTTTGTAAGGGCCCCTGA------G--TTCTGTAACTGTTTA 1955
|||||||| ||| ||| |||||||| | ||||||| | ||||||||||||| |
Sbjct 1859 ACCTGTGTGCAATGGAGAGTTTGTAATGACCCCTGAATTCCAGGGTTCTGTAACTGTT-A 1917
Query 1956 TAAAGTTCATTTTCTTTA 1973
||||||||||||||||||
Sbjct 1918 TAAAGTTCATTTTCTTTA 1935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5