BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10070.1
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919779 jgi|Araly1|919779|scaffold_101060.1 2006 0.0
Ahg471124 jgi|Araly1|471124|fgenesh2_kg.1__1078__AT1G10090.1 206 6e-52
> Ahg919779 jgi|Araly1|919779|scaffold_101060.1
Length=1207
Score = 2006 bits (1086), Expect = 0.0
Identities = 1159/1195 (97%), Gaps = 2/1195 (0%)
Strand=Plus/Plus
Query 163 AAGAAGATGATCAAAACAATCACATCTCTACGCAAAACTCTGGTTCTACCTCTTCATTTA 222
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 15 AAGAAGATGATCAAAGCAATCTCATCTCTACGCAAAACTCTGGTTCTACCTCTTCATTTA 74
Query 223 CATATTCGTACGCTACAAACTTTCGCCAAGTACAACGCACAAGCTGCATCGGCTTTGCGA 282
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 75 CATATTCGTACGCTACAAACTTTCGCTAAGTACAACGCACAAGCTGCCTCGGCCTTGCGA 134
Query 283 GAAGAGCGTAAGAAACCTCTTTATCAAAATGGAGATGATGTATATGCGGATTTGGATTGG 342
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 135 GAAGAGCGTAAGACACCTCTTTATCAAAATGGAGATGATGAATATGTGGATTTGGATTGG 194
Query 343 GATAATCTCGGGTTTGGTCTAAATCCAGCTGATTACATGTATGTCATGAAATGCTCAAAA 402
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 195 GATAATCTCGGGTTTGGTCTAACTCCAGCTGATTACATGTATGTCATGAAATGCTCAAAA 254
Query 403 GACGGCGAATTCACTCAAGGAGAACTTAGTCCCTATGGGAATATTCAGCTAAGTCCTTCT 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GACGGCGAATTCACTCAAGGAGAACTTAGTCCCTATGGGAATATTCAGCTAAGTCCTTCT 314
Query 463 GCTGGAGTCTTAAACTATGGACAGGCGATATACGAAGGTACAAAAGCATACAGGAAAGAA 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GCTGGAGTCTTAAACTATGGACAGGCGATATACGAAGGTACAAAAGCATACAGGAAAGAA 374
Query 523 AATGGGAAGCTTCTTTTGTTTCGTCCGGATCACAACGCTATCCGGATGAAGCTTGGCGCT 582
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 375 AATGGGAAGCTTCTTTTGTTTCGCCCTGATCACAACGCTCTCCGGATGAAGCTTGGCGCT 434
Query 583 GAACGGATGCTCATGCCTTCTCCTTCGGTTGATCAGTTTGTTAATGCAGTTAAACAAACC 642
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 435 GAACGGATGCTCATGCCTTCTCCTTCGATTGATCAGTTTGTTAATGCAATTAAACAAACC 494
Query 643 GCTCTTGCAAACAAACGTTGGGTTCCTCCTGCAGGGAAAGGGACTTTGTACATTAGGCCT 702
|||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 495 GCTCTTGCAAACAAGCGTTGGGTTCCTCCTTCAGGAAAAGGGACTTTGTACATTAGGCCT 554
Query 703 TTGTTGATGGGAAGTGGTCCAATACTTGGTTTAGGTCCTGCACCTGAATATACATTCATT 762
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 555 TTGTTGATGGGAAGTGGTCCAATTCTTGGTTTAGGTCCTGCACCTGAATTTACATTCATT 614
Query 763 GTCTATGCATCTCCAGTTGGTAACTACTTCAAGGAAGGGATGGCTGCTCTTAACCTCTAT 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GTCTATGCATCTCCAGTTGGTAACTACTTCAAGGAAGGGATGGCTGCTCTTAACCTCTAT 674
Query 823 GTTGAGGAAGAATATGTCCGAGCGGCTCCTGGTGGAGCTGGAGGCGTCAAGAGCATCACA 882
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 675 GTTGAGGAAGAATATGTCCGAGCAGCTCCTGGTGGAGCTGGAGGTGTCAAGAGCATCACA 734
Query 883 AATTATGCGCCAGTTTTGAAAGCACTGAGCAGAGCCAAGAGTCGGGGGTTTTCAGACGTT 942
|||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 735 AATTATGCACCCGTTTTGAAAGCACTGAGCAGAGCCAAGAGTCAGGGGTTTTCAGACGTT 794
Query 943 CTTTATCTCGACTCTGTCAAGAAGAAGTACTTAGAGGAGGCTTCTTCTTGCAACGTCTTT 1002
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 795 CTTTATCTCGACTCTGTCAAGAAGAAGTATTTAGAGGAGGCTTCTTCTTGCAACGTCTTT 854
Query 1003 GTTGTCAAGGGTCGGACAATCTCAACTCCTGCAACTAATGGAACAATTCTTGAAGGGATT 1062
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 855 GTTGTCAAGGGTCGGACAATCTCAACTCCTGCAACTAATGGAACAATTCTTGAAGGAATT 914
Query 1063 ACGCGGAAAAGTGTGATGGAGATCGCAAGTGATCAAGGTTATCAGGTAGTAGAGAAGGCA 1122
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 915 ACGCGGAAAAGTGTGATGGAGATCGCAAGTGATCAAGGGTATCAGGTAGTAGAGAAGGCA 974
Query 1123 GTTCATGTGGATGAAGTAATGGATGCAGATGAAGTTTTTTGCACCGGAACTGCTGTAGTA 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 975 GTTCATGTGGATGAAGTAATGGATGCAGATGAAGTTTTTTGCACCGGAACTGCCGTAGTA 1034
Query 1183 GTTGCTCCCGTGGGCACTATCACATATCAGGAAAAAAGAGTAGAGTATAAAACCGGGGAT 1242
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1035 GTTGCTCCTGTGGGCACTATAACATATCAGGACAAAAGAGTAGAGTATAAAACCGGGGAT 1094
Query 1243 GAATCTGTCTGCCAGAAACTGCGTTCAGTCCTCGTAGGTATCCAGACAGGATTGATTGAA 1302
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1095 GAATCTGTCTGCCAGAAACTGCGTTCAGTCCTTGTCGGTATCCAGACAGGATTGATTGAA 1154
Query 1303 GATAACAAGGGATGGGTCACAGATATCAACTGAAGAATAACAATCTTCAATATTT 1357
||||||||||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct 1155 GATAACAAGGGATGGGTCACAAATATCAACTGAA-AA-AACAATCTTCAATATTT 1207
> Ahg471124 jgi|Araly1|471124|fgenesh2_kg.1__1078__AT1G10090.1
Length=2802
Score = 206 bits (111), Expect = 6e-52
Identities = 126/133 (95%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 1511 ATCGTCTATTGTACTTGTAGACAAGTGTTTCCAAGGATAGTTTCA-TTTCCTCCTGCAGT 1569
||||||||||||||||||||| ||||| ||||||| | ||||||| ||||||||||||||
Sbjct 2802 ATCGTCTATTGTACTTGTAGAAAAGTG-TTCCAAGCAAAGTTTCATTTTCCTCCTGCAGT 2744
Query 1570 AACTCCAAATTTACATTTCATTTTAGGAGGCAAAACTGTATATACGTTTCAATGGCTTTC 1629
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2743 AACTTCAAATTTACATTTCATTTTAGGAGGCAAAACTGTATATACGTTTCAATGGTTTTC 2684
Query 1630 CCCACTTCTTACT 1642
|||||||||||||
Sbjct 2683 CCCACTTCTTACT 2671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61553835920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5