BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10090.1 Length=2910 Score E Sequences producing significant alignments: (Bits) Value Ahg471124 jgi|Araly1|471124|fgenesh2_kg.1__1078__AT1G10090.1 4194 0.0 Ahg925155 jgi|Araly1|925155|scaffold_200716.1 1886 0.0 > Ahg471124 jgi|Araly1|471124|fgenesh2_kg.1__1078__AT1G10090.1 Length=2802 Score = 4194 bits (2271), Expect = 0.0 Identities = 2645/2823 (94%), Gaps = 36/2823 (1%) Strand=Plus/Plus Query 74 ATCATTATCTTTCTTTAATTTTGTTGGATTTTTTGCATATTGCAAAGTTTAGAACGCGAG 133 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATCATTATCTTTCTTTAAATTTGTTGGATTTTTTGCATATTGCAAAGTTTTGAACGCGAG 60 Query 134 CGAATTCTCCGCGGAATTGGGGTTAAAAGGAAGAACTT-TTAGGGTTTTTGATTCTTCGG 192 ||||||||||| |||||| ||||||||||| |||| || ||||||||||||||||||||| Sbjct 61 CGAATTCTCCGGGGAATTCGGGTTAAAAGGTAGAAATTATTAGGGTTTTTGATTCTTCGG 120 Query 193 GTTTTCTCGTGCTTT-GATTCCTTTCAAGTCAAAGCAAAGCATTACCTTTTCTCGTCCAT 251 |||||||| | |||| |||||||||||||||||||||||||||| ||||||| |||||| Sbjct 121 GTTTTCTCATACTTTCGATTCCTTTCAAGTCAAAGCAAAGCATTGCCTTTTC--GTCCAT 178 Query 252 ATCTTTT-GACGACCTA-AGTTTCT-GCTGTGAATTGTTAAACAGCCATCAGCCTGGGCT 308 | | || || | || | | | || || || | |||| || | || || Sbjct 179 GTAAGTCAGAATTGTTACAAATTATTGTT-TGTTTTCTTGATCAGCTATTA---TGTTCT 234 Query 309 TGAT-TAGCCAACCCTGTT-AA---GGCAGGGTTTGAACTAAAAGTGAGATAGTGAGATG 363 | | | | | | | || || ||||||||||||||||||| ||||||||||||||| Sbjct 235 TC-TCT-GTCTTCTTTATTTAATAAGGCAGGGTTTGAACTAAAATTGAGATAGTGAGATG 292 Query 364 GATGTCTCAGCACTTTTAACGTCTGCTGGGATTAATATAGCGATATGCGTAGTGCTTGTA 423 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 293 GATGTCTCATCACTTTTAACGTCTGCTGGGATTAATATAGGGATATGCGTAGTGCTTGTA 352 Query 424 TCGCTTTATTCCATTCTACGAAAGCAGCCAGCCAATTATTGTGTTTACTTTGGTCGATTG 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 353 TCGCTTTATTCCATTCTACGAAAGCAGCCAGCCAATTATTGTGTTTACTTTGGTCGATTG 412 Query 484 CTTTCTGACGGAAGAGTTAAACGTCATGATCCTCGTTGGTATGAGAGGTTCGCGCCCTCT 543 ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 413 CTTTCCGACGGAAGAGTTAAACGTCATGATCCTCGTTGGTATGAGAGGTTTGCTCCCTCT 472 Query 544 CCTAGTTGGCTCGTGAAAGCTTGGGAAACCACTGAGGAAGAGATGTTGGCTGCTGCTGGT 603 || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 473 CCAAGTTGGCTCGTGAAAGCTTGGGAAACTACTGAGGACGAGATGTTGGCTGCTGCTGGT 532 Query 604 CTGGATGCTGTGGTTTTCATCAGGATGGTCATTTGCAGCATTCGTATTTTCTCAATCGTC 663 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 CTGGACGCTGTGGTTTTCATCAGGATGGTCATTTGCAGCATTCGTATTTTCTCAATCGTG 592 Query 664 GCAGTCGTTTGCCTTGCCTTTGTGTTACCTGTTAACTATTATGGACAAAAGA-TGGAGCA 722 |||||||||||| ||||||||||| ||||||||||||||||||||||||||| || ||| Sbjct 593 GCAGTCGTTTGCATTGCCTTTGTGCTACCTGTTAACTATTATGGACAAAAGACTGC-GCA 651 Query 723 CAAGGAAGTCCATTTGGAGTCATTGGGAGTATTCACAATTGAGAACCTTAATCCACGCTC 782 |||||| |||||| ||||||| |||||| ||||||||||||||||||| |||| |||||| Sbjct 652 CAAGGAGGTCCATCTGGAGTCGTTGGGAATATTCACAATTGAGAACCTCAATCAACGCTC 711 Query 783 ACGATGGCTCTGGGTTCATTGTCTCTCATTGTACATCATATCCTCTGCAGCATGTGCTCT 842 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 712 ACGATGGCTCTGGGTTCATTGTCTCGCATTGTACATCATATCCTCTGCAGCATGTGCTCT 771 Query 843 TCTTTACTTTGAGTATAAGAACATAGCCAAAAAGAGGCTTGCCCATATTAGTGGATCTGC 902 |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| | Sbjct 772 TCTTTACTTTGAATATAAGAACATAGCCAAAAGGAGGCTTGCCCATATTACTGGATCTAC 831 Query 903 CTCAAAGCCAAGTCATTTTACTGTTCTTATTCGTGCTATTCCTCAGTCTCCTGACCAGTC 962 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 CTCAAAGCAAAGTCATTTTACTGTTCTTATTCGTGCTATTCCTCAGTCTCCTGACCAGTC 891 Query 963 CTACAGCGAGACAGTGAGCAAATACTTTACAAATTACTATGCACCAAGCTATGTGTCGCA 1022 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 892 CTACAGCGAGACGGTGAGCAAATACTTCACAAATTACTATGCACCAAGCTATGTGTCGCA 951 Query 1023 CCTAATGGTCTACCGTGATGGCTTCATTCACAGACTGATGAATGAGACGGAGAGGATGTG 1082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 CCTAATGGTCTACCGTGATGGCTTCATTCACAGACTGATGAATGAGACGGAGAGGATGTG 1011 Query 1083 TCAGGCTATAAAACATGTTTCTCCTGATTTAAGTTGTAATCCGAGTTTGAAGTCATGCGT 1142 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1012 TCAGGCTATAAAACATGTTTCTCCTGATTTAAGTTGTAATCCGAGTTTGAAGTCATGTGC 1071 Query 1143 CCTTTGTGGACCTGCAGCCACAAATTCTTTTCAAATCATCTCGAACGAGACAGACAGTGT 1202 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1072 CCTTTGTGGACCTGCAGCCACAAATTCTTTTCAAATCCTCTCGAACGAGACAGACAGTGT 1131 Query 1203 CAAAGGATTGGAGCTTGGTGAGTTGACTTTGACTACGACAGAGGAAGAACGTCCCGTTGC 1262 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 CAAAGGAC---AGCTTGGTGAGTTGACTTTGACTACGACAGAGGAAGAACGTCCCGTTGC 1188 Query 1263 TTTTGTGTTTTTCAAGAGTCGTTATGATGCTCTTGTTGTTTCAGAAGTTCTTCAAACACC 1322 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1189 TTTTGTGTTTTTCAAGAGTCGTTATGATGCTCTTGTTGTTTCAGAGGTTCTTCAAACACC 1248 Query 1323 AAATCCTATGTTATGGGTGGCAGACTTGGCTCCAGAGCCTCATGATGTTCACTGGAGAAA 1382 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1249 AAATCCTATGTTATGGGTGGCAGACTTGGCGCCAGAGCCTCATGATGTTCACTGGAGGAA 1308 Query 1383 TCTCAGAATACCTTATCGGCAGCTTTGGATGCGAAGAATAGCAACCCTTGTTGGTGCAAT 1442 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 1309 TCTCAGAATACCTTATCGGCAACTTTGGATGCGAAGAATAGCAACCCTTGTTGGTGCAGT 1368 Query 1443 TGCCTTCATGTTTGTGTTTCTTTTTCCTGTTACCTTTGTTCAAGGGCTGACTCAACTACC 1502 |||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| Sbjct 1369 TGCCTTCATGTTTGTGTTTCTTTTCCCTGTTGCCTTTGTTCAAGGGCTGACTCAGCTACA 1428 Query 1503 AACGTTATCCAAGAATTTTCCTTTTCTAAAAGACCTCTTGAACA-GGAGGTTTATGGAGC 1561 |||| |||||||||||||||||||||||| |||||||||| ||| || |||||||| ||| Sbjct 1429 AACGCTATCCAAGAATTTTCCTTTTCTAAGAGACCTCTTGCACAAGG-GGTTTATGAAGC 1487 Query 1562 AGGTCATCACAGGGTATTTACCAAGTGTGATTTTGGTTCTATTCTTTTATACCGTTCCGC 1621 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1488 AGGTCATCACAGGGTACTTACCAAGTGTGATTTTGGTTCTATTCTTTTATGCCGTTCCGC 1547 Query 1622 CATTGATGATGTACTTTTCAACCTTGGAGGGATGTGTTTCTCGGAGTCAAAGaaaaaaaa 1681 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 1548 CATTGATGATGTACTTTTCAACCTTGGAGGGATGTGTTTCTCGGAGTCTAAGAAAGAAAA 1607 Query 1682 GTGCATGTCTCAAAATTTTATACTTCACCATCTGGAATGTGTTCTTCGTCAATATTCTAT 1741 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1608 GTGCATGTATCAAAATTTTATACTTTACCATCTGGAATGTGTTCTTCGTCAATATTCTAT 1667 Query 1742 CAGGCTCTGTTATCAGGCAGTTTACCGTCTTGAATAGTGTGAGGGACGTACCTGCACAAC 1801 |||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||| Sbjct 1668 CAGGCTCTGTTATCAGGCAGTTGAGCGTCTTGTCTAGTGTGAGGGACATACCTGCACAAC 1727 Query 1802 TTGCGAAACTTGTTCCAGCACAGGCTGGCTTCTTCATGACCTATTGTTTCACGTCTGGTT 1861 |||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 1728 TTGCGAAAGTAGTTCCAGCACAGGTTGGCTTCTTCATGACCTATTGTTTCACATCTGGTT 1787 Query 1862 GGGCCGGTTTGGCATGTGAAATCATGCAACCTGTAGGTCTTATTTGGAATCTGATTGCAA 1921 ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| Sbjct 1788 GGGCCGGTTTGGCATGTGAAATCATGCAACCTGTATGTCTTATCTGGAATCTGATAGCAA 1847 Query 1922 AAGTTATTGTTAAGAACAAGGAGGAGTCATATGAAACACTTAGGTTTCCCTACCATACAG 1981 |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1848 AAGTTATTGTCAAGAACAAGGAGGACTCATATGAAACACTTAGGTTTCCGTACCATACAG 1907 Query 1982 AAATTCCAAGACTACTTTTGTTCGGGCTCCTGGGTTTCACCAATTCAGTCATAGCGCCTC 2041 ||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1908 AAATTCCTCGACTACTTTTGTTCGGGCTCCTAGGTTTCACAAATTCAGTCATAGCGCCTC 1967 Query 2042 TGATACTGCCGTTTCTGCTGATCTACTTTTTCTTCGCATATCTTATATACAAAAATCAGA 2101 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1968 TAATACTGCCGTTTCTGCTGATCTACTTTTTCTTCGCATATCTTATATACAAAAATCAGA 2027 Query 2102 TAATCAACGTCTATATTACAAAGTATGAAAGCGGTGGACAATATTGGCCTGTTTTTCACA 2161 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2028 TAATCAACGTCTATATTACAAAATATGAAAGCGGTGGACAATATTGGCCTGTTTTTCACA 2087 Query 2162 ACACTACAATCTTTTCACTGATCTTGTCGCAAGTTATAGCTCTAGGCTTTTTCGGGTTAA 2221 |||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| Sbjct 2088 ACACGACAATCTTTTCACTGATCTTGTCGCAAATTATAGCGCTAGGCTTTTTCGGTTTAA 2147 Query 2222 AGCTATCAACGGTTGCTTCAGGTTTCACCATCCCGTTAATCCTTC-TCACTCTTCTATTT 2280 |||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| Sbjct 2148 AGCTATCAACGGTTGCTTCAGGTTTCACCATCCCGTTAATT-TTCCTTACTCTTCTATTT 2206 Query 2281 AGTGAGTATTGCCGGCAAAGGTTTGCGCCCATATTCCAGAAATATCCAGCCGAGATTCTT 2340 |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| Sbjct 2207 AGTGAGTATTGCCGGCAAAGATTTGCACCCATATTCAAGAAATATCCAGCCGAGATTCTT 2266 Query 2341 ATCGCTATGGACAGAGCAGATGAGATGACAGGAAAGATGGAAGAGATACATAACAACTTG 2400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2267 ATCGCTATGGACAGAGCAGATGAGATGACAGGAAAGATGGAAGAGATACATAACAACTTG 2326 Query 2401 AAAGTTGCATACTCTCAGATACCAACGTGTTCTGAAGAATCCAGCAAAGCTGGTTGCACT 2460 |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| Sbjct 2327 AAAGCTGCATACTCTCAGATACCAACGTGTTCTGAGGAATCGAGCAAAGCTGGTTTCACT 2386 Query 2461 TCTCCTTGCTCAGATCAGGAGTTACCAGATTCTGAAGAGTTGAAGCCTGAGAAAGAGAAT 2520 |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 2387 TCTCCTTGCTCAGATCAGGAGTTACCAGATTCTGAACAGTTGAAACCTGAGAAAGAGAAT 2446 Query 2521 CTTAAAGCTGATTACATATGGGAGTTCCAGAGAAGTAAATCTGGTCTTGATCTTGAGGTG 2580 | |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 2447 CATAAAGCTGATTACATATGGGCGTTCCAGAGAAGTAAATCTGGTCATGATCTTGAGGTG 2506 Query 2581 AAATCCTGTCCCAGTGCTTCCCCAATTCGTAATTCCCCAGGGTTTGCCGAGATCTACAAA 2640 |||||||||||||||||||| |||| |||| ||||||||| |||||| |||||||||||| Sbjct 2507 AAATCCTGTCCCAGTGCTTCACCAAATCGTTATTCCCCAGCGTTTGCTGAGATCTACAAA 2566 Query 2641 CGAACATAGATACTTGAGTTACAATGTATACTTTATAACTCTGCAGATGAA-AAGGTGTT 2699 |||||||||||||||||||||||||||||| ||| | |||||||||||| ||| |||| Sbjct 2567 CGAACATAGATACTTGAGTTACAATGTATA-TTTG-A-CTCTGCAGATGATTAAG-TGTT 2622 Query 2700 TTTGCAGTTGAGTTACAATTTTAGTAGTTGAAACCCTTATGGGTGATGAAAGTAAGAAGT 2759 | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2623 T--GCAGTTGAGTTACAATTTTAGTAGTTGAAGCCCTTATGGGTGATGAAAGTAAGAAGT 2680 Query 2760 GGGGAAAGCCATTGAAACGTATATACAGTTTTGCCTCCTAAAATGAAATGTAAATTTGGA 2819 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2681 GGGGAAAACCATTGAAACGTATATACAGTTTTGCCTCCTAAAATGAAATGTAAATTTGAA 2740 Query 2820 GTTACTGCAGGAGGAAA-TGAAACTATCCTTGGAAACACTTGTCTACAAGTACAATAGAC 2878 ||||||||||||||||| ||||||| | ||||||| ||||| |||||||||||||||||| Sbjct 2741 GTTACTGCAGGAGGAAAATGAAACTTTGCTTGGAA-CACTTTTCTACAAGTACAATAGAC 2799 Query 2879 GAT 2881 ||| Sbjct 2800 GAT 2802 > Ahg925155 jgi|Araly1|925155|scaffold_200716.1 Length=2335 Score = 1886 bits (1021), Expect = 0.0 Identities = 1888/2298 (82%), Gaps = 94/2298 (4%) Strand=Plus/Plus Query 357 TGAGATGGATG-TCTCAGCACTT-TTAACGTCTGCTGGGATTAATATAGCGATATGCGTA 414 ||||||||| | | ||||| ||| || || ||||| ||||||||||| |||||||| || Sbjct 17 TGAGATGGA-GATATCAGCTCTTCTT-ACATCTGCCGGGATTAATATCTCGATATGCATA 74 Query 415 GTGCTTGTATCGCTTTATTCCATTC-TACGAAAGCAGCCAGCCAATTATTGTGTTTACTT 473 |||||| | || |||||||| || | || |||| || ||| ||||||| ||||| || || Sbjct 75 GTGCTTTTGTCACTTTATTCTATACTTAGGAAA-CAACCATCCAATTACTGTGTATATTT 133 Query 474 TGGTCGATTGCTT-TCTGACGGAAGAGTTAAACGTCATGATCC-TCGTTGGTATGAGAGG 531 ||| ||| |||| | || || | | || |||| ||||||| | ||||||||||||| Sbjct 134 TGGCCGAAGGCTTGTTTG-TGGTGGGGCTAGACGTTATGATCCGT-TTTGGTATGAGAGG 191 Query 532 TTCGCGCCCTCTCCTAGTTGGCTCGTGAAAGCTTGGGAAACCACTGAGGAAGAGATGTTG 591 || | ||| ||||| |||||||| || ||||| |||||||| | ||| || ||| | || Sbjct 192 TTTGTGCCGTCTCCAAGTTGGCTGGTTAAAGCATGGGAAACTAGTGAAGATGAGTTATTA 251 Query 592 GCTGCTGCTGGTCTGGATGCTGTGGTTTTCATCAGGATGGTCATTTGCAGCATTCGTATT 651 |||||||||||||| |||||||| || ||| | ||||||||| ||| ||||||||||||| Sbjct 252 GCTGCTGCTGGTCTTGATGCTGTTGTCTTCCTTAGGATGGTCCTTTTCAGCATTCGTATT 311 Query 652 TTCTCAATCGTCGCAGTCGTTTGCCTTGCCTTTGTGTTACCTGTTAACTATTATGGACAA 711 |||| || || || || ||||| |||||||||| | |||||||| |||||||| ||| Sbjct 312 TTCTTTATAGTTGCTGTTATTTGCATTGCCTTTGTACTGCCTGTTAATTATTATGGGCAA 371 Query 712 AAGATGGAGCACAAGGAAGTCCATTTGGAGTCATTGGGAGTATTCACAATTGAGAACCTT 771 ||||| ||| |||||| ||||||||||||||| | ||| |||||||| || || ||| Sbjct 372 CCGATGGTGCATAAGGAAATCCATTTGGAGTCATCCGAAGTGTTCACAATCGAAAATCTT 431 Query 772 AATCCACGCT-CACGATGGCTCTGGGTTCATTGTCTCT-CATTGTACATCATATCCTCTG 829 || | ||| || |||||| |||||||||||||| | || ||||||| ||| |||| | Sbjct 432 AAAGAAGGCTCCA-AATGGCTGTGGGTTCATTGTCT-TGCACTGTACATTATAACCTCAG 489 Query 830 CAGCATGTGC-TCTTCTTTACTTTGAGTATAAGAACATAGCCAAAAAGAGGCTTGCCCAT 888 | |||||| | ||||||||| |||||||||| || |||||| |||| |||||||| ||| Sbjct 490 CGGCATGT-CTTCTTCTTTATTTTGAGTATAGGACCATAGCTAAAATGAGGCTTGGACAT 548 Query 889 ATTAGTGGATCTGCCTCAAAGCCAAGTCATTTTACTGTTCTTATTCGTGCTATTCC-TCA 947 |||| ||||| |||||||||||||||||| ||||| |||||||| ||||||||||| | Sbjct 549 ATTACTGGATGTGCCTCAAAGCCAAGTCAATTTACCGTTCTTATCCGTGCTATTCCAT-G 607 Query 948 GTCTCCTGACCAGTCCTACAGCGAGACAGTGAGCAAATACTTTACAAATTACTATGCACC 1007 ||||||||| || || |||||||| ||| ||||||||| ||| |||||||||||| || | Sbjct 608 GTCTCCTGAGCAATCTTACAGCGACACACTGAGCAAATTCTTCACAAATTACTATTCATC 667 Query 1008 AAGCTATGTGTCGCACCTAATGGTCTACCGTGATGGCT-TCATTCACAGACTGATGAATG 1066 |||||||||||| |||| ||||||||||| | |||| | ||||||| |||||| || || Sbjct 668 AAGCTATGTGTCCCACCAAATGGTCTACCATAATGG-TATCATTCAGAGACTGTTGCGTG 726 Query 1067 AGACGGAGAGGATGTGTCAGGCTATAAAACATGTTTCTCCTG-ATTTAAGTTGTAATCCG 1125 || ||||||||||||| ||| || ||||||| |||||||||| | | || |||||| || Sbjct 727 AGGCGGAGAGGATGTGCCAGACTCTAAAACACGTTTCTCCTGAAATCAA-TTGTAAACCA 785 Query 1126 AGTTTGAAGTCATGCGTCCTTTGT---GGACCTGCAGCCACAAATTCTTTTCAAATCATC 1182 ||||||||| ||||| || ||||| |||||| ||||||||||||||||||| ||| | Sbjct 786 AGTTTGAAGCCATGCATCTTTTGTGGAGGACCTACAGCCACAAATTCTTTTCATATCCTA 845 Query 1183 TCGAACGAGACAGACAGTGTCAAAGGATTGGAGCTTGGTGAGTTGACTTTGACTACGACA 1242 || || ||| | |||||||| |||||| |||||||||||||||||||| ||||||||||| Sbjct 846 TCTAATGAGGCGGACAGTGTGAAAGGAATGGAGCTTGGTGAGTTGACTATGACTACGACA 905 Query 1243 GAGGAAGAACGTCCCGTTGCTTTTGTGTTTTTCAAGAGTCGTTATGATGCTCTTGTTGTT 1302 ||| |||||||||| | |||||||||||||||||| | || |||||||||||||||||| Sbjct 906 GAGCAAGAACGTCCAGCTGCTTTTGTGTTTTTCAAAACACGCTATGATGCTCTTGTTGTT 965 Query 1303 TCAGAAGTTCTTCAAACACCAAATCCTATGTTATGGGTGGCAGACTTGGCTCCAGAGCCT 1362 ||||| ||||| ||| || ||||||||||| |||||||| ||||||| |||||||| ||| Sbjct 966 TCAGAGGTTCTACAATCATCAAATCCTATGCTATGGGTGACAGACTTAGCTCCAGAACCT 1025 Query 1363 CATGATGT-TCACTGG-AGAAATCTCAGA-ATACCTTATCGGCAGCTTTGGATGC-GAAG 1418 || ||||| | | ||| || ||||||| | || |||||||| || |||||||| | ||| Sbjct 1026 CACGATGTGT-ATTGGAAG-AATCTCA-ACATTCCTTATCGACAACTTTGGATACGGAA- 1081 Query 1419 AATAGCAACCCTTGTTGGTGCAATTGCCTTCATGTTTGTGTTTCTTTTTCCTGTTACCTT 1478 |||||||||||||||||||||| |||| |||||||||||||||||| |||| || ||||| Sbjct 1082 AATAGCAACCCTTGTTGGTGCAGTTGCTTTCATGTTTGTGTTTCTTATTCCCGTGACCTT 1141 Query 1479 TGTTCAAGGGCTGACTCAACTACCAAC-GTTATC-CAAGAATTTTCCTTTTCTAAAAGAC 1536 |||||||||||||||||||| | | | | || || | | ||||||||||||| || | Sbjct 1142 CATTCAAGGGCTGACTCAACTA-GAGCAGCTGTCTCACGCA-TTTCCTTTTCTAAGAGGC 1199 Query 1537 CTCTTGA--ACAGGAGGTTTATGGAG-CAGGTCATCACAGGGTATTTACCAAGTGTGATT 1593 |||||| | || | |||||| || ||||||||||||||||| ||||| |||||||| Sbjct 1200 ATCTTGAGGA-AGCA-GTTTAT-AAGCCAGGTCATCACAGGGTACTTACCCAGTGTGATC 1256 Query 1594 TTGGTTCTATTCTTT-TATACCGTTCCGCCATTGATGATGTACTTTTCAACCTTGGAGGG 1652 ||| ||||||| ||| ||| ||||||| |||||||||||||| ||||| |||||||||| Sbjct 1257 TTGATTCTATT-TTTCTATGCCGTTCCACCATTGATGATGTATTTTTCGGCCTTGGAGGG 1315 Query 1653 ATGTGTTTCTCGGAGTCA-AAGaaaaaaaaGTGCATGTC-TCAAAATTTTATACTTCACC 1710 |||| |||| |||||| | ||| || || ||||| || | ||||| | ||||| || ||| Sbjct 1316 ATGTATTTCACGGAGT-ATAAGGAAGAAGAGTGCTTG-CATCAAAGTCTTATATTTTACC 1373 Query 1711 ATCTGGAATGTGTTCTTCGTCAATATTCTATCAGGCTCTGTTATCAGGCAGTTTACCGTC 1770 || ||||||||||||||||| |||||| |||| || |||||||||||||| | | ||| Sbjct 1374 ATTTGGAATGTGTTCTTCGTGAATATTTTATCGGGGTCTGTTATCAGGCAACTGAATGTC 1433 Query 1771 TTGAATAGTGTGAGGGACGTACCTGCACAACTTGCGAA-ACT-TGTTCCAGCACAGGCTG 1828 || |||||| || ||| |||||||||||||||| || | | || ||| ||||||||| Sbjct 1434 TTTTCTAGTGTCAGAGACATACCTGCACAACTTGC-AAGA-TCAGTGCCAACACAGGCTG 1491 Query 1829 GCTTCTTCATGACCTATTGTTTCACGTCTGGTTGGGCCG-GTTTGGCATGTGAAATCATG 1887 ||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||| ||| Sbjct 1492 GCTTCTTCATGACCTATTGTTTCACATCTGGTTGGGC-GAGTTTGGCTTGTGAAATAATG 1550 Query 1888 CAACCTGTAGG-TCTTATTTGGAATCTGATTGCAAAAGTTATTGTTAAGAACAAGGAGGA 1946 || ||| | || |||||| ||||||||| | ||||||||| || |||||| |||| || Sbjct 1551 CAGCCTAT-GGCTCTTATCTGGAATCTGGTAGCAAAAGTTGTTACCAAGAACGAGGATGA 1609 Query 1947 GTCATATGAAACACTTAGGTTTCCC-TACCATACAGAAATTCCAAGACTACTTTTGTTCG 2005 ||||||||||||||||||||| ||| ||||| || |||||||| | || |||||||| | Sbjct 1610 GTCATATGAAACACTTAGGTT-CCCATACCACACCGAAATTCCTCGGCTGCTTTTGTTTG 1668 Query 2006 GGCTCCTGGGTTTCACCAATTCAGTCATAGCGCCTCTGATACTGCCGTTTCTGCTGATCT 2065 ||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| | Sbjct 1669 GGCTCCTGGGTTTCACCAATTCAGTCATAGCACCACTGATACTGCCGTTTTTGCTGATAT 1728 Query 2066 ACTTTTTC-TTCGCATATCTTATATACAAAAATCAGATAATCAACGTCTATATTACAAAG 2124 |||||||| || |||||||| |||||||||||||||||| ||||||| |||||||||||| Sbjct 1729 ACTTTTTCCTT-GCATATCTCATATACAAAAATCAGATACTCAACGTGTATATTACAAAG 1787 Query 2125 TATGAAAGCGGTGGACAATATTGGCCTGTTTTTCACAACACTACAATCTTTTCACTGATC 2184 || ||||||||||||||||| |||||| |||| |||||||| |||||||||||||||||| Sbjct 1788 TACGAAAGCGGTGGACAATACTGGCCTATTTTCCACAACACAACAATCTTTTCACTGATC 1847 Query 2185 TTGTCGCA-AGTTATAGCTCTAGGCTTT-TTCGGGTTAAAGCTATCAACGGTTGCTTCAG 2242 ||| | || | |||||||| | || ||| ||||| ||||||||||||||||||||||| | Sbjct 1848 TTGACACAGA-TTATAGCTTTGGG-TTTCTTCGGATTAAAGCTATCAACGGTTGCTTCGG 1905 Query 2243 GTTTCACCATCCCGTTAATCCTTCTCACTCTT-CTATTTAGTGAGTATTGCCGGCAAAGG 2301 ||||||| || || || || ||||||||| || || |||||||||||||| ||||| ||| Sbjct 1906 GTTTCACTATACCATTGATTCTTCTCACT-TTGCTTTTTAGTGAGTATTGTCGGCAGAGG 1964 Query 2302 TTTGCGCCCATATTCCAGAAATATCCAGCCGAGATTCTTATCGCTATGGACAGAGCAGAT 2361 ||||||||||| ||| | ||| |||| ||| || |||| || | ||||||||| || ||| Sbjct 1965 TTTGCGCCCATTTTCAACAAAAATCCTGCCCAGGTTCTCATAGATATGGACAGGGCTGAT 2024 Query 2362 GAGATGACAGGAAAGATGGAAGAGATACATAACAACTTG-A-AAGTTGCATACTCTCAGA 2419 || || ||||||||||||||||| ||||||| || ||| | || | | |||||| |||| Sbjct 2025 GAAATCTCAGGAAAGATGGAAGAGTTACATAAAAAATTGCATAA-T-GTATACTCGCAGA 2082 Query 2420 TACCA--ACGTGTTCTGAAGAA-TC--C-AGCAAAGCTGGTTGCACTTCTCCTTGCTCAG 2473 ||||| || | |||| ||| || | || ||||||| |||| | ||||| | | Sbjct 2083 TACCATTACAC-T-CTGA-GAAATCATCGAGTAAAGCTGAATGCAGTAATCCTTTCAAAA 2139 Query 2474 ATCAGGAGTTACCAGATTCTGAAGAGTTGAAGCCTGAGAAAGAGAAT-CTTAAAGCTGAT 2532 ||||||||||||||||| ||||| | |||||||| ||| ||| | || | | ||| || Sbjct 2140 ATCAGGAGTTACCAGATCCTGAAAAATTGAAGCCAGAGGAAGGGGATGCG-ATAGC-GAA 2197 Query 2533 TACA-T-ATGGG-AGT-TCCAGAG-AAGTAAATCTGGTCTTGATCTTGAGG-TGAAATCC 2586 | | | ||||| | | || || | || | ||||||||| || | ||| | | || ||| Sbjct 2198 -AGAGTTATGGGGA-TATCAAG-GCAA-TGAATCTGGTCAAGAACATGACGCT-AAGTCC 2252 Query 2587 TGTCCCAGTGCTTCCCCA 2604 |||||||||||||| ||| Sbjct 2253 TGTCCCAGTGCTTCACCA 2270 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109852266580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5