BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10155.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312058 jgi|Araly1|312058|fgenesh1_pm.C_scaffold_1000838 922 0.0
> Ahg312058 jgi|Araly1|312058|fgenesh1_pm.C_scaffold_1000838
Length=558
Score = 922 bits (499), Expect = 0.0
Identities = 540/559 (97%), Gaps = 5/559 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGTCCAAAAAGCTGTCAAGAG---TTCTCACTACGAGGCAGAATCCAACATGGAA 57
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTGTCCAAAAAGCTGTCAAGAGTTCTTCTCACTACGAGGCAGAATCCAACATGGAA 60
Query 58 CAAGATATTGTTAGAAAAGCATGGGTCTTTAAGCCAAGTGGTCTTAATTTCATATGGGGA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAGATATTGTTAGAAAAGCATGGGTCTTTAAGCCAAGTGGTCTTAATTTCATATGGGGA 120
Query 118 GGTGATTCTCGGTATTGGGTCATCCCTA-ACGAAGACAGGACGCCTGCTGAACTAAAGAA 176
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 121 GGTGATTCTCGGTATTGGGTCATCCCTAGA-GAAGACAGGACGCCTGCTGAACTAAAGAA 179
Query 177 AGTGAGTTGGTTAGAAGTAACCGGTTCGTACGACAAGATAGAACCAGGCAAAACATACCG 236
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 GGTGAGTTGGTTAGAAGTAACCGGTTCGTACGACAAGATAGAGCCAGGCAAAACATACCG 239
Query 237 AATTGGTTTTAAAATCTCGTTCACAGCTGATGCAACCGGATGGGACCAAGCTCCAGTTTT 296
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AATCGGTTTTAAAATCTCACTCACAGCTGATGCAACCGGATGGGACCAAGCTCCAGTTTT 299
Query 297 CATGTCAGCAAAAATTGGAAAGAAAGGGAGGACAATTTGGAAGAGGATCAAATCGGTTAA 356
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 CATGTCAGCGAAAATTGGAAAGAAAGGGAAGACAATTTGGAAGAGGATCAAATCGGTTAA 359
Query 357 CAATAACTTTGACAAACTCAAAGGCGGAACCGGACCGGTTAACATACCAGATGAGACTGA 416
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAATAACATTGAGAAACTCAAAGGCGGAACCGGACCGGTTAACATACCAGATGAGACTGA 419
Query 417 TGGTCGGTTTGAGATCTTTGTAAGTCCCAAGGTAGCAATAAACCAAGACACCAAGCTCCA 476
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TGGTCGGTTTGAGGTCTTTGTCAGTCCCAAGGTAGCAATAAACCAAGACACCAAGCTTCA 479
Query 477 ATTTGGTTTGTATGAAGTGTGGACCGGAAAATGGAAAACAGGCTTGTTGATCTATGAAGC 536
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 480 ATTTGGTTTGTATGAAGTGTGGACCGGAAAATGGAAGACAGGTTTGTTGATCTATGAAGC 539
Query 537 TTTTGTTGAAGAAGTGTAA 555
|||||||||||||||||||
Sbjct 540 TTTTGTTGAAGAAGTGTAA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5