BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10200.1 Length=982 Score E Sequences producing significant alignments: (Bits) Value Ahg471134 jgi|Araly1|471134|fgenesh2_kg.1__1088__AT1G10200.1 1397 0.0 > Ahg471134 jgi|Araly1|471134|fgenesh2_kg.1__1088__AT1G10200.1 Length=916 Score = 1397 bits (756), Expect = 0.0 Identities = 874/928 (94%), Gaps = 20/928 (2%) Strand=Plus/Plus Query 1 AACAATAATTGACAatctctttctttcatcttcatcttattcttctttatctctctctct 60 |||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| Sbjct 1 AACAATAATTGACAATCTCTTTCTTTCATCTTCATCCTATTCCTCTTTA------TCTCT 54 Query 61 ctctcAAGACTATTGAGCTTCTTTCTTTTTTCCTGAGTC--T--TTTAGTCTGATCTCTT 116 ||||||| || |||||| | ||||||||||||||||| | |||||||||||||||| Sbjct 55 CTCTCAAAACGATTGAG---C-TTCTTTTTTCCTGAGTCTTTACTTTAGTCTGATCTCTT 110 Query 117 ACAAGAATGGCGTTCGCAGGAACAACCCAGAAATGCATGGCATGTGACAAAACAGTTTAT 176 |||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 111 ACAAAAATGGCGTTCGCAGGAACAACCCAAAAATGCATGGCCTGTGACAAAACCGTTTAT 170 Query 177 CTTGTCGACAAGTTAACCGCCGATAACCGGGTCTACCACAAAGCTTGTTTCCGATGTCAC 236 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 171 CTTGTTGACAAGTTAACCGCCGATAACCGGGTCTACCACAAAGCTTGTTTCCGATGTCAC 230 Query 237 CATTGCAAAGGAACTCTCAAGCTTAGCAATTACAACTCCTTTGAAGGAGTTCTCTACTGC 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 231 CATTGCAAAGGAACTCTCAAGCTTAGCAATTACAACTCCTTTGAAGGAGTTCTCTATTGC 290 Query 297 AGACCACATTTCGATCAAAACTTCAAGAGAACTGGAAGTCTTGAGAAAAGCTTCGAAGGG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 291 AGACCACATTTCGATCAAAACTTCAAGAGAACTGGAAGTCTTGAGAAAAGCTTCGAAGGG 350 Query 357 ACACCAAAGATTGGGAAACCTGATAGGCCTTTGGAGGGAGAGAGACCTGCTGGAACCAAA 416 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 351 ACACCAAAGATTGGAAAACCTGATAGGCCTTTGGAGGGAGAGAGACCTGCTGGAACCAAA 410 Query 417 GTTTCGAATATGTTTGGTGGAACACGAGAGAAATGCGTTGGTTGCGACAAAACCGTGTAT 476 || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 411 GTGTCGAATATGTTTGGTGGAACACGAGAGAAATGCGTTGGCTGCGATAAAACCGTGTAT 470 Query 477 CCAATTGAGAAGGTATCGGTGAATGGAACATTGTACCACAAGAGCTGCTTCAAGTGTACA 536 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 471 CCAATTGAGAAGGTGTCGGTGAATGGGACATTGTACCACAAGAGCTGCTTCAAGTGTACA 530 Query 537 CATGGAGGCTGCACGATAAGCCCTTCGAATTACATAGCTCACGAGGGTAAGCTATATTGC 596 |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 531 CATGGAGGTTGCACCATAAGCCCGTCGAATTACATAGCTCACGAGGGAAAGCTTTATTGC 590 Query 597 AAGCATCATCATATTCAGCTGATCAAGGAGAAAGGAAACTTGAGCCAGCTCGAAGGAGGA 656 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 591 AAGCATCATCATATTCAGCTGATCAAAGAGAAAGGAAACTTGAGCCAGCTCGAAGGAGGA 650 Query 657 GGAGAGAATGCCGCCAAGGACAAAGTCGTCGCTGCTTAAAGAAACAATTCAATCTCTCTG 716 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 651 GGAGAGAATGCCGCTAAGGACAAAGACGTCGCTGCTTAAAGAAACAATTCAATCTCTCTG 710 Query 717 GGATGATTTTGACTATCGAAGAATCAAAAGAGTCACTACTTCTCCATCGATCGATAACAT 776 | ||||||||||| || ||||||||||||||||||||||| || | |||||||||||||| Sbjct 711 G-ATGATTTTGACAATGGAAGAATCAAAAGAGTCACTACTACTTC-TCGATCGATAACAT 768 Query 777 ATATTGgttttgtttcttcctacgtttgtgtttttctttttggtctttaatatgtt-tt- 834 ||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| || Sbjct 769 ATATTGGTTTTGTTTCTTCTTACGTTTGTGTTTGTCTTTTTGGTCTTTAAGATGTTGTTG 828 Query 835 ttttttttt--GGGACCTTTGTTCACTCTTTTATTGGGTTTCTTGAAATGAAACTAGAGA 892 ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 829 TTTTTTTTTTTGGGATCTTTGTTCACTCTTTTATTGGGTTTCTTGAGATGAAACTAGAGA 888 Query 893 AACAAAGAAATAATGGATGTTTGCTTAT 920 |||| ||||||||||||||||||||||| Sbjct 889 AACAGAGAAATAATGGATGTTTGCTTAT 916 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36483631569 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5