BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10310.1 Length=901 Score E Sequences producing significant alignments: (Bits) Value Ahg471142 jgi|Araly1|471142|fgenesh2_kg.1__1096__AT1G10310.1 1282 0.0 > Ahg471142 jgi|Araly1|471142|fgenesh2_kg.1__1096__AT1G10310.1 Length=760 Score = 1282 bits (694), Expect = 0.0 Identities = 738/760 (97%), Gaps = 0/760 (0%) Strand=Plus/Plus Query 17 AGAAAGAGAAGGTAATCGGCCACGATGACGATGGCGACGCCTTTCAGTGGGGCTGCGAAC 76 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGAAAGAGAAATTAATCGGCCACGATGACGATGGCGACGCCTTTCAGTGGGGCTGCGAAC 60 Query 77 TCTATTGTGGCGGCGAGGACCGTTCTGATAACGGGAGTGAGCAAAGGTCTGGGAAGAGCC 136 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTGTTGTGGCGGCGAGGACCGTTCTGATAACGGGAGTGAGCAAAGGTCTGGGAAGAGCC 120 Query 137 CTAGCTCTCGAGCTGGCCAAGAGGGGTCACACTGTGATAGGATGCGCTCGTAGTCAAGAG 196 |||||||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| Sbjct 121 CTAGCTCTCGAGTTGGCCAAGAGAGGTCACTCTGTGATAGGATGCGCTCGTACTCAAGAG 180 Query 197 AAGCTCACCGCTCTTCAATCGGAGCTTTCCTCTTCGACCAATCATCTCCTCCTCACCGCT 256 |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| Sbjct 181 AAGCTCACCGCTCTTCAATCGGAGCTCTCCTCTCCGGCCAATCATCTCCTCCTCACCGCT 240 Query 257 GATGTGAAATCAAACAGCAGTGTCGAAGAAATGGCACACACAATTGTGGAGAAGAAGGGT 316 |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| Sbjct 241 GATGTGAAATCAAACAGCAGTGTCGAAGAACTGGCACAAACAATAATGGAGAAGAAGGGT 300 Query 317 GTCCCAGATATCATAGTTAACAATGCTGGTACCATCAATAAGAACAGCAAGATTTGGGAA 376 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 301 GTCCCAGATATCATAGTTAACAACGCTGGTACCATCAATAAGAACAGCAAGATTTGGGAA 360 Query 377 GTCTCTGCTGAAGATTTTGACAATGTCATGGATACAAACGTTAAAGGAGTTGCAAATGTG 436 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 361 GTCTCTGCAGAAGATTTTGACAATGTCATGGATACAAACGTTAAAGGAGTAGCAAATGTG 420 Query 437 CTGCGCCATTTTATCCCTTTGATGCTCCCACGCAAGCAAGGAATTATTGTAAATATGTCT 496 || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 421 CTTCGCCATTTTATCCCTTTGATGCTCCCACGTAAGCAAGGAATTATTGTGAATATGTCT 480 Query 497 TCTGGATGGGGAAGATCTGGTGCTGCCCTGGTTGCACCTTACTGTGCATCAAAATGGGCG 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TCTGGATGGGGAAGATCTGGTGCTGCCCTGGTTGCACCTTACTGTGCATCAAAATGGGCG 540 Query 557 ATTGAGGGTTTAAGCCGAGCAGTGGCAAAGGAAGTAGTTGAAGGAATGGCAGTAGTTGCA 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ATTGAGGGTTTAAGCCGAGCAGTGGCAAAGGAAGTAGTTGAAGGAATGGCAGTAGTTGCA 600 Query 617 TTAAATCCAGGCGTGATCAACACAGAATTACTCACTTCCTGCTTCGGGAACTCAGCTTCC 676 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTAAATCCAGGCGTGATTAACACAGAATTACTCACTTCCTGCTTCGGGAACTCAGCTTCC 660 Query 677 TTGTATCAAGCTCCTGATGCTTGGGCTGTGAAGGCTGCGACGATGATTCTGAATCTTACA 736 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 661 TTGTATCAAGCTCCTGATGCTTGGGCTGTGAAGGCTGCAACGATGATTCTGAATCTTACA 720 Query 737 GCGGGTGACAATGGCGGATCTCTCACAGTCTAACAACTAA 776 |||||||||||||||||||||||||||||||||||||||| Sbjct 721 GCGGGTGACAATGGCGGATCTCTCACAGTCTAACAACTAA 760 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33395675292 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5