BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10370.1 Length=962 Score E Sequences producing significant alignments: (Bits) Value Ahg919812 jgi|Araly1|919812|scaffold_101093.1 1188 0.0 Ahg471148 jgi|Araly1|471148|fgenesh2_kg.1__1102__AT1G10360.1 638 0.0 Ahg936976 jgi|Araly1|936976|scaffold_501167.1 65.8 6e-10 > Ahg919812 jgi|Araly1|919812|scaffold_101093.1 Length=726 Score = 1188 bits (643), Expect = 0.0 Identities = 684/704 (97%), Gaps = 1/704 (0%) Strand=Plus/Plus Query 67 TTTGGAT-TTTGAAGAGAAAATGGCAAGCAGCGACGTGAAGCTGATCGGTGCATGGGCGA 125 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTTGGATCTTAGAAGAGAAAATGGCAAGCAGCGACGTGAAGCTGATCGGTGCATGGGCGA 60 Query 126 GTCCCTTTGTGATGAGGCCGAGGATTGCTCTAAACCTCAAGTCTGTCCCCTACGAGTTCC 185 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCCCCTTTGTGATGAGGCCGAGGATTGCTCTAAACCTCAAGTCTGTCCCCTACGAGTTCC 120 Query 186 TCCAAGAGACGTTTGGGTCTAAGAGCGAGTTGCTTCTTAAATCAAACCCGGTTCACAAGA 245 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCCAGGAGACGTTTGGGTCTAAGAGCGAGTTGCTTCTTAAATCAAACCCGGTTCACAAGA 180 Query 246 AGATCCCGGTTCTGCTTCATGCTGATAAACCGGTGAGTGAGTCCAACATCATCGTTGAGT 305 |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 181 AGATTCCGGTTCTTCTTCATGCTGATAAACCGGTGTGTGAGTCCAACATCATCGTTGAGT 240 Query 306 ATATCGATGACACTTGGAGCTCATCTGGACCGTCCATTCTCCCTTCCGATCCTTACGATC 365 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 241 ATATCGATGACACTTGGAGCTCATCTGGACCGTCCATACTCCCTTCCGATCCTTACGATC 300 Query 366 GGGCCATGGCTCGGTTCTGGGCTGCTTACATCGACGAAAAGTGGTTTGTCGCTCTAAGAG 425 |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 301 GGGCAATGGCTCGGTTCTGGGCTGCTTACATTGACGAAAAATGGTTTGTCGCTCTAAGAA 360 Query 426 GTTTCCTAAAAGCCGGAGGAGAAGAAGAGAAGAAAGCTGTGATAGCTCAACTAGAAGAAG 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTTCCTAAAAGCCGGAGGAGAAGAAGAGAAGAAAGCTGTGATAGCTCAACTAGAAGAAG 420 Query 486 GGAATGCGTTTCTGGAGAAGGCGTTCATTGATTGCAGCAAAGGAAAACCGTTCTTCAACG 545 ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 421 GGAATGCGTTTCTAGAGAAGGCCTTCATCGATTGCAGCAAAGGAAAACCGTTCTTCAACG 480 Query 546 GTGACAACATCGGTTACCTCGACATTGCTCTCGGGTGCTTCTTGGCTTGGTTGAGAGTCA 605 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 481 GTGACAACATCGGTTACCTAGACATTGCTCTTGGGTGCTTCTTGGCTTGGTTGAGAGTCA 540 Query 606 CCGAGTTAGCAGTCAGCTATAAAATTCTTGATGAGGCCAAGACACCTTCTTTGTCCAAAT 665 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CCGAGTTAGCAGTCAGCCATAAAATTCTTGATGAGGCCAAGACACCTTCTTTGTCCAAAT 600 Query 666 GGGCTGAGAATTTCTGTAATGATCCCGCTGTAAAACCTGTCATGCCCGAGACTGCAAAGC 725 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 601 GGGCTGAGAATTTCTGTAATGATCCCGCTGTAAAACCTGTCATGCCAGAGACTGCCAAGC 660 Query 726 TTGCTGAATTCGCAAAGAAGATCTTTCCTAAGCCGCAGGCCTAA 769 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TTGCTGAATTCGCAAAGAAGATCTTTCCTAAGCCGCAGGCCTAA 704 > Ahg471148 jgi|Araly1|471148|fgenesh2_kg.1__1102__AT1G10360.1 Length=729 Score = 638 bits (345), Expect = 0.0 Identities = 580/694 (84%), Gaps = 14/694 (2%) Strand=Plus/Plus Query 83 AAAATGGCAAGCAG-CGACGTGAAGCTGATCGG-TGCATGGGCGAGTCCCTTT-GTGATG 139 |||||||| | | | |||||||||||||||||| | ||||||||||| ||| || ||| Sbjct 18 AAAATGGCGA-CTGACGACGTGAAGCTGATCGGCT-CATGGGCGAGT-GTTTTCGTCATG 74 Query 140 AGGCCGAGGATTGCTCTAAACCTCAAGTCTGTCCCCTACGAGTTCCTCCAAGAGACGTTT 199 ||| ||||||||||||| ||||||| ||| | |||||| |||||||| ||||||||| Sbjct 75 AGGGCGAGGATTGCTCTCCACCTCAAATCTATTAGCTACGAATTCCTCCAGGAGACGTTT 134 Query 200 GGGTCTAAGAGCGAGTTGCTTCTTAAATCAAACCCGGTTCACAAGAAGATCCCGGTTCTG 259 || || |||||||| ||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 135 GGTTCAAAGAGCGAATTGCTCCTCAAATCAAACCCGGTTCACAAGAAGATGCCGGTTCTG 194 Query 260 CTTCATGCTGATAAACCGGTGAGTGAGTCCAACATCATCGTTGAGTATATCGATGACACT 319 |||| ||||| ||||||||| | |||||||||||||||||| |||| ||||| || || Sbjct 195 ATTCACGCTGACAAACCGGTGTGCGAGTCCAACATCATCGTTCAGTACATCGACGAGGCT 254 Query 320 TGGAGCTCATCTGGACCGTCCATTCTCCCTTCCGATCCTTACGATCGGGCCATGGCTCGG 379 |||| |||||||||||||||||||||||| ||| |||| ||||| |||||||| |||||| Sbjct 255 TGGAACTCATCTGGACCGTCCATTCTCCCGTCCCATCCCTACGACCGGGCCATCGCTCGG 314 Query 380 TTCTGGGCTGCTTACATCGACGAAAAGTGGTTTGTCGCTCTAAGAGGTTTCCTAAAAGC- 438 || |||||||| ||||| ||||| |||||||| || |||| ||| || |||||| ||| Sbjct 315 TTTTGGGCTGCCTACATAGACGATCAGTGGTTTATCTCTCTGAGAAGTATCCTAACAGCT 374 Query 439 CGGAGGAGAAGAAGAGAAGAAAGCTGTGATAGCTCAACTAGAAGAAGGGAATGCGTTTCT 498 | |||||||||||||||||| || | ||||||||| | |||||| ||| | | |||| Sbjct 375 C-AAGGAGAAGAAGAGAAGAATGCAGCCATAGCTCAAGTCGAAGAAAGGACCGAGATTCT 433 Query 499 GGAGAAGGCGTTCATTGATTGCAGCAAAGGAAAACCGTTCTTCAACGGTGACAACATCGG 558 |||||| || ||||| ||||||||||||||||||||||||||||| |||||| | ||||| Sbjct 434 GGAGAAAGCATTCATCGATTGCAGCAAAGGAAAACCGTTCTTCAATGGTGACCATATCGG 493 Query 559 TTACCTCGACATTGCTCTCGGGTGCTTCTTGGCTTGGTTGAGAGTCACCGAGTTAGCA-G 617 ||||||||||||||| ||||| | ||||||| ||||| |||||| |||||| | | | Sbjct 494 TTACCTCGACATTGCCCTCGGAAGTTTCTTGGGTTGGTGGAGAGTTGTCGAGTTGG-ATG 552 Query 618 TCAG-CTATAAAATTCTTGATGAGGCCAAGACACCTTCTTT-GTCCAAATGGGCTGAGAA 675 || | ||||| ||||||||||| ||||| | |||||| | | |||||||||| ||| Sbjct 553 CCAATC-ATAAATTTCTTGATGAGACCAAGGCTCCTTCTCTAG-CCAAATGGGCAGAGCG 610 Query 676 TTTCTGTAATGATCCCGCTGTAAAACCTGTCATGCCCGAGACTGCAAAGCTTGCTGAATT 735 |||||| |||| |||||||| |||||| | |||||||||| | ||||||| || ||||| Sbjct 611 GTTCTGTGATGACCCCGCTGTGAAACCTATAATGCCCGAGATTACAAAGCTCGCAGAATT 670 Query 736 CGCAAAGAAGATCTTTCCTAAGCCGCAGGCCTAA 769 ||||| |||| |||||||||||||||| || ||| Sbjct 671 CGCAAGGAAGCTCTTTCCTAAGCCGCAAGCATAA 704 > Ahg936976 jgi|Araly1|936976|scaffold_501167.1 Length=728 Score = 65.8 bits (35), Expect = 6e-10 Identities = 72/89 (81%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 230 AACCCGGTTCACAAGAAGATCCCGGTTCTGCTTC-ATG-CTGATAAACCGGTGA-GTGAG 286 ||||||||||||||||||||||||||||| | || | | | |||||| || | | ||| Sbjct 172 AACCCGGTTCACAAGAAGATCCCGGTTCT-CATCCACAACGG-TAAACCTGT-ATGCGAG 228 Query 287 TCCAACATCATCGTTGAGTATATCGATGA 315 ||||| ||||| || || || |||||||| Sbjct 229 TCCAATATCATAGTCGAATACATCGATGA 257 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35721173229 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5