BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10410.1
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471155 jgi|Araly1|471155|fgenesh2_kg.1__1109__AT1G10410.1 2987 0.0
Ahg475347 jgi|Araly1|475347|fgenesh2_kg.2__477__AT1G59650.1 974 0.0
> Ahg471155 jgi|Araly1|471155|fgenesh2_kg.1__1109__AT1G10410.1
Length=1958
Score = 2987 bits (1617), Expect = 0.0
Identities = 1872/1988 (94%), Gaps = 45/1988 (2%)
Strand=Plus/Plus
Query 21 TTTTTCTCTCATTTTATTGACTTTCCGAATCTCCAAAAATCTAACCCAAA-AAATAAACA 79
||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |
Sbjct 1 TTTTT-TCTCATTTTATTGACTTTCCGAATCTCCAAAAATCTAA-CCAAATAAA-AAA-A 56
Query 80 ATAGttttttttttCTCCGCAAAGGAAAAATCTTTTCTTCACCAAATAATTTGTCTCTTT 139
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 A-A---TATTTTTTCTCCGCAAAGGAAAAATCTTTTCTTCACCAAATAATTTGTCTCTTT 112
Query 140 CGCAAATCTCAGCTCTCTCTCGAAGTG-CCTTTCAACGATAAATTTGTGGGCTTTATTCA 198
|||||||||||||| ||||||||| || |||||||| |||||| ||||||||||||||||
Sbjct 113 CGCAAATCTCAGCTTTCTCTCGAAATGCCCTTTCAATGATAAAATTGTGGGCTTTATTCA 172
Query 199 TTTATAGTGTTGTTTTGATGATGACAGATTCTATTACCAGAAATTGATC----A-A-AGA 252
||||||||||| || |||| |||||||||||||||||||||||||||| | | |||
Sbjct 173 TTTATAGTGTTCATTCGATGGTGACAGATTCTATTACCAGAAATTGATCAAAGAGAGAGA 232
Query 253 GA-A-AAACGTTGCTCTCTCTTGATTTCTTTTCTGtttttttttttATATAATTAATTTG 310
|| | |||||||| |||||||||||| ||||||| ||||||| | | | ||||||
Sbjct 233 GAGAGAAACGTTG--CTCTCTTGATTTTTTTTCTG--GGTTTTTTT-T-T-A-TAATTTA 284
Query 311 TTCCGGTGAATGATCGTCGTCTTATGGAAGGTTGTAGCTAATTTCTAATCTATagagaga 370
|||||||| || |||| | |||||||||| ||| ||||||||||||||| || | |||
Sbjct 285 TTCCGGTG-ATCATCG-C--CTTATGGAAGATTGAAGCTAATTTCTAATC--TA-A-AGA 336
Query 371 gagagaTGGGAGGTTGCGTGTCGACGCCGAAGAGCTGTGTTGGAGCAAAACTGAGGTCAA 430
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 337 GAGAGATGGGAGGTTGCGTGTCGACGCCTAAGAGCTGTGTTGGAGCAAAACTGAGGTCAA 396
Query 431 GTAAACGAAGGAAGAGTCGTAGACGACGAAAAATTCAAAGGAAGAGAGCCGCCGTCTCTT 490
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 397 GTAAACGAAGGAAGAGTCGTAGACGACGAAAAATTCAAAGGAAGAGA---GCCGTCTCTT 453
Query 491 CTCGTCTCTCTGACGGATCTTTCGACAATCTCGATCATCA---TCATCGCAACTTCTCTA 547
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 454 CTCGTCTCTCTGACGGATCTTTCGACAATCTCGATCATCATCCTCATCGTAACTTCTCCA 513
Query 548 ATCCCAGTTCTCGAGCAACTGGCGAAGACGCATGGTTTGAGTCCAATGTCGCATTTGAAA 607
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 514 ATCCCAGTTCTCGAGCAACTGGCGACGACGCATGGTTTGAGTCCAATGTCGCATTTGAAA 573
Query 608 CAGACTGTGATGATGATTTCCACAGTGTTCATGAAGATGCATTGTCTTTAAACGGATCTG 667
||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||||
Sbjct 574 CAGACTGTGATGATGATTTTCACAGTGTCCATGAAGATACATTGTCTATAAACGGATCTG 633
Query 668 AGCGTGTATCACTCTCGAGTACGACAACCACATCATCAACACGAGACACTGATTCAAATG 727
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 634 AGCGTGTATCACTCTCGAGTACAACAACCACATCATCAACCCGAGACACTGATTCAAATG 693
Query 728 AAGTGATGTCTCAATCGAAATCAGACGGTGACTTAAACGACACAAACCAGCCTGATTTGA 787
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 694 AAGTGATGTCACAATCGAAATCAGACGGTGACTTAAACGACACAAAGCAGCCTGATTT-A 752
Query 788 -TTGATTCATCTGCAGATGAAGGTCTCTTGGAAAACTGCAGGATCTTACCGAGTAATTGT 846
||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 753 GTTGATTCGTCTGCAGATGAAGGACTTTTGGAAAACTGCAGGATCTTACCGAGCAATTGT 812
Query 847 TTGCCTTGTCTGAATACAACAACTGTTCCTTCTATTGACAAGAGAAGGTCTCTTAGCTCT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TTGCCTTGTCTGAATACAACAACTGTTCCTTCTATTGACAAGAGAAGGTCTCTTAGCTCT 872
Query 907 AGCCCTCCCAGTTCCAG-GAAAAAATCATCTCTTAGACTTTCTTATAAATGGAGAGAAGG 965
|||||||||||||| || ||||||| ||||||| ||||||||||||||||||||||||
Sbjct 873 AGCCCTCCCAGTTCGAGAAAAAAAAT-GTCTCTTAAACTTTCTTATAAATGGAGAGAAGG 931
Query 966 TCATGCTTCAGGAGCCTTGTTTTTGTCGAAAATGCAGCTGAAGAGACCGATAGCGGGTTC 1025
||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 932 TCATGCTTCAGGAGCATTGTTTTTGTCTAAAATGCAGTTGAAGAGACCGATAGCGGGTTC 991
Query 1026 TCAGGTTCCTTTCTGTCCAATTGATAAGAAAATGCTCGATTGTTGGTCAACCATTGATCC 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TCAGGTTCCTTTCTGTCCAATTGATAAGAAAATGCTCGATTGTTGGTCAACCATTGATCC 1051
Query 1086 AAATAGTTTTCGGGTTCGTGGCAAAACATATCTCAGGGAGAAGAAGAAAGAGTTTGCACC 1145
|||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 1052 AAATAGTTTTAGGGTTCGTGGCAAAACATATTTCAGAGAAAAGAAGAAAGAGTTTGCACC 1111
Query 1146 TAGCCATGCTGCGTACAATCCTTTTGGTGTCGATGTTTTCCTATCGGAACACAAAATACA 1205
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1112 TAGCCATGCTGCGTATAATCCTTTTGGTGTCGATGTTTTCTTATCGGAACACAAAATAAA 1171
Query 1206 CCATGTTGCACAATATGTCAAACTTCCTGTTACTACCACATCCACAAAACTCCCATCTAT 1265
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1172 CCATGTTGCACAATATGTCAAACTTCCCGTTACTACCACATCCACAAAACTCCCATCTAT 1231
Query 1266 CCTTGTTGTAAATGTTCAGATTCCGTTATATCCAACTGCAATCTTTCAAGGTGAATCTGA 1325
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1232 CCTTGTTGTAAATGTTCAGATTCCGTTGTATCCAACTGCAATCTTTCAAGGTGACTCTGA 1291
Query 1326 TGGAGAAGGAATGAATATTGTATTATACTTCAAACTCTCGGATAATTATTCAAAGGAACT 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 TGGAGAAGGAATGAATATTGTATTATACTTCAAACTCTCGGATAATTATTCAAAGGAACT 1351
Query 1386 TCCGCTCCATTTTCAAGAAAGCATTCGGAGATTAATAGATGATGAGGTTGAGAAAGTTAA 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 TCCGCTCCATTTTCAAGAAAGCATTCGGAGATTAATAGATGATGAGGTTGAGAAAGTTAA 1411
Query 1446 AGGCTTCCCTTTGGATACAACGGCACCTTTTAGAGAGCGGCTTAAGATATTGGGACGTGT 1505
|||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1412 AGGCTTCCCTATGGATACAACCGCACCTTTTAGAGAGCGGCTCAAGATATTGGGACGTGT 1471
Query 1506 TGCAAACGTGGATGATCTCCATTTGAGTGGTCCGGAGAAAAAACTGATGCAGGCTTATAA 1565
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 TGCAAACGTAGATGATCTCCATTTGAGTGGTCCGGAGAAAAAACTGATGCAGGCTTATAA 1531
Query 1566 CGAGAAACCTGTACTTTCACGTCCGCAGCACGAATTCTACTTGGGTGACAATTACTTTGA 1625
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1532 CGAGAAACCTGTTCTTTCACGTCCGCAGCACGAATTCTACTTGGGCGACAATTACTTTGA 1591
Query 1626 GATTGATATCGATATGCATAGATTCGGTTATATATCGCGGAAAGGGTTTGAAACATTCAT 1685
| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1592 GGTTGATATAGATATGCATAGATTCGGTTATATATCCCGGAAAGGGTTTGAAACATTCAT 1651
Query 1686 AGACAGACTCAAGATCTGTGTTCTTGATGTTGGCCTCACAATTCAGGGGAACAAACCAGA 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1652 AGACAGACTCAAGATCTGTGTTCTTGATGTTGGCCTCACAATTCAGGGGAACAAACCGGA 1711
Query 1746 GGAGCTACCGGAGCAGATTCTGTGTTGCGTCAGGCTAAATGGGATTGATTTCATGAACTA 1805
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1712 GGAGCTACCAGAGCAGATTCTATGTTGCGTCAGGCTAAATGGGATTGATTTCATGAACTA 1771
Query 1806 TCATCAATTAACTCAAGAACTCCTATGACTAACAACATTGTTTTCTCCTCTGTTTTTCCT 1865
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1772 TCATCAATTAACTCAAGAACTCCTATGACTAACAGCATTATTTTCTCCTCTGTTTTTCCT 1831
Query 1866 TGTGAAAAGAAACACAAAATCCAAAAGAGCATCCCGTTAGAACCCCAAGAACACAAAACA 1925
| ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||
Sbjct 1832 TCTGAAAAGAAACACAAAATCTAAAAGAGCATCCCTTTAGAAACCCAAGAACACAAA-CA 1890
Query 1926 AAGGGTGATGATTTACAAGTGAATATATGAAAATTTCGAATCTTTAATCCACAGTATTAT 1985
|||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1891 AAGGGTGATGATTTTCAAGTGAATATATGAAAATTTCGAATCTTTAATCAAAAGTATTAT 1950
Query 1986 CTTATACT 1993
||| ||||
Sbjct 1951 CTTCTACT 1958
> Ahg475347 jgi|Araly1|475347|fgenesh2_kg.2__477__AT1G59650.1
Length=2050
Score = 974 bits (527), Expect = 0.0
Identities = 874/1038 (84%), Gaps = 38/1038 (4%)
Strand=Plus/Plus
Query 801 AGATGAAGG-TCTCTTGGAAAACTGCAGGA-TCTTACCGAGTAATTGTTTGCCTTGTCTG 858
||||||||| | | |||||||||||| ||| |||| ||||| ||||||||||| |||||
Sbjct 753 AGATGAAGGAT-TGTTGGAAAACTGCGGGATTCTT-CCGAGCAATTGTTTGCCATGTCTT 810
Query 859 AATACAACAACTGTTC-CTTCTATTGACAAGAGAAGGTCTCTT-AGCTCTAGCCCTCCCA 916
||| |||||||| | |||||||| |||||||||||| || |||||||||||||| |
Sbjct 811 AAT---TTAACTGTTCAC-TCTATTGAAAAGAGAAGGTCT-TTAAGCTCTAGCCCTCCGA 865
Query 917 GTTCCAGGAAAAAATCAT-CTCTTAGACTTTCTTAT-AAATGGAGAGAAGGTCATGCTTC 974
|| | ||||||||| | | | |||| ||| |||| | || ||||||||||| || ||| |
Sbjct 866 GTACGAGGAAAAAAGC-TGCGCTTAAACTATCTT-TCAAGTGGAGAGAAGGGCACGCTAC 923
Query 975 AGGAGCCTTGT-TTTTGT-CGAAAATGCAGCTGAAGAGACCGATAGCGGGTTCTCAGGTT 1032
|| |||| | |||| | | ||||||||| || |||||||||| || ||||||||||||
Sbjct 924 CGG-TCCTT-TATTTTCTACAAAAATGCAGTTGCAGAGACCGATGGCAGGTTCTCAGGTT 981
Query 1033 CC-TTTCTGTCCAATTGATAAGAAAATGCTCGATTGTTGGTCAACCATTGATCCAAATAG 1091
|| ||| ||||| | || ||| ||||| |||||| |||||||| ||||| ||| |||
Sbjct 982 CCGTTT-TGTCCGCTCGAAAAGCAAATGTTCGATTCTTGGTCAATTATTGAGCCAGGTAG 1040
Query 1092 TTTTCGGGTTCGTGGCAAAACATATCTCAGGGAGAAGAAGAAAGAGTTTGCACCTAGCCA 1151
||| ||||||||| ||||||| ||| |||| || |||||||||||||||||||| | | |
Sbjct 1041 TTTCCGGGTTCGTAGCAAAACTTATTTCAGAGAAAAGAAGAAAGAGTTTGCACCAAACTA 1100
Query 1152 TGCTGCGTACAATCCTTTTGGTGTCGATGT-TTTCCTATCGGAACACAAAATACACCATG 1210
|||||| || ||||| |||||||||||||| ||| |||| ||| ||| || |||||
Sbjct 1101 TGCTGCATATAATCCATTTGGTGTCGATGTATTT-TTATCTCAACGTAAAGTAAACCATA 1159
Query 1211 TTGCACAATATGTCAAACTTCC---TGTTACTACCACATCC-ACAAAACTCCCATCTATC 1266
| || ||||| || | ||||| |||||| ||||| || || || |||||||| |||
Sbjct 1160 TAGCGCAATACGTGGAGCTTCCTATTGTTACCACCAC-CCCGACCAAGCTCCCATCAATC 1218
Query 1267 CTTGTTGTAAATGTTCAGATTCCGTTATATCCAACTGCAATCTTTCAAGGTGAATCTGAT 1326
||||||||||||||||||||||| || |||||| ||||||| |||||||||||| |||||
Sbjct 1219 CTTGTTGTAAATGTTCAGATTCCATTGTATCCAGCTGCAATTTTTCAAGGTGAAACTGAT 1278
Query 1327 GGAGAAGGAATGAATATTGTATTATACTTCAAACTCTCGGATAATTATTCAAAGGAACTT 1386
||||||||||||||| |||| |||||||| ||||| ||||||||||||| |||||| |||
Sbjct 1279 GGAGAAGGAATGAATTTTGTTTTATACTTTAAACTTTCGGATAATTATTTAAAGGAGCTT 1338
Query 1387 CC-GCTCCATTTTCAAGAAAGCATTCGGAGATTAATAGATGATGAGGTTGAGAAAGTTAA 1445
|| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1339 CCACCT-CATTTTCAAGAAAGCATTCAGAGATTACTAGATGATGAGGTTGAGAAAGTTAG 1397
Query 1446 AGGC-TTCCCTTTGGATACAACGGCACCTTTTAGAGAGCGGCTT-AAGATATTGGGACGT 1503
|||| || || ||||||||| | ||| |||||||| ||| || ||||||||||| |||
Sbjct 1398 AGGCTTTACC-ATGGATACAAATGTACCCTTTAGAGAACGG-TTAAAGATATTGGGTCGT 1455
Query 1504 GTTGCAAACGTGGATGATCTCCATTTGAGTGGTC-CGGAGAAAAAACTGATGCAGGCTTA 1562
||||| || || ||||||||||| |||| ||| | | ||||||||||| ||| | |||||
Sbjct 1456 GTTGCGAATGTAGATGATCTCCAATTGAATGG-CGCAGAGAAAAAACTTATGAATGCTTA 1514
Query 1563 TAACGAGAAACCTGTACTTTCACGTCCGCAGCACGAATTCTACTTGGGTGACAATTACTT 1622
|||||| |||||||| ||||||||||| |||||||| ||||||| |||||| ||||||||
Sbjct 1515 TAACGAAAAACCTGTGCTTTCACGTCCACAGCACGAGTTCTACTCGGGTGAAAATTACTT 1574
Query 1623 TGAGATTGATATCGATATGCATAGATTCGGTTATATATCGCGGAAAGGGTTTGAAACATT 1682
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct 1575 TGAGATTGATATCGATATGCATAGATTCAGTTATATATCGCGGAAAGGATTTGAAGCATT 1634
Query 1683 CATAGACAGACTCAAG-ATCTGTGTTCTTGATGTTGGCCTCACAATTCAGGGGAACAAAC 1741
||||||| |||||| | |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1635 TTTAGACAGGCTCAAGCA-CTGTGTTCTTGATGTTGGACTCACAATTCAGGGGAATAAAC 1693
Query 1742 CAGAGGAGCTACCGGAGCAGATTCTGTGTTGCGTCAGGCTAAATGGGATTGATTTCATGA 1801
||||||| |||||||||||||||||||||| ||| || |||| |||||||||| |||||
Sbjct 1694 CAGAGGAATTACCGGAGCAGATTCTGTGTTGTGTCCGGTTAAACGGGATTGATTACATGA 1753
Query 1802 ACTATCATCAATTAACTC 1819
| |||||||| ||| |||
Sbjct 1754 ATTATCATCAGTTAGCTC 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74999692405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5