BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10580.1 Length=2073 Score E Sequences producing significant alignments: (Bits) Value Ahg910790 jgi|Araly1|910790|Al_scaffold_0001_1044 2839 0.0 Ahg355139 jgi|Araly1|355139|fgenesh1_pg.C_scaffold_7002312 152 9e-36 Ahg339306 jgi|Araly1|339306|fgenesh1_pg.C_scaffold_2001405 152 9e-36 > Ahg910790 jgi|Araly1|910790|Al_scaffold_0001_1044 Length=1719 Score = 2839 bits (1537), Expect = 0.0 Identities = 1663/1724 (96%), Gaps = 7/1724 (0%) Strand=Plus/Plus Query 73 ATGGATCTGATTCAATCCTACGAAGAAGAAGACGAAGCCGTTGCTTCCTCGCCGGAATCT 132 ||||||||||||||||||||||| |||| | | ||||||||||||||||||||||||||| Sbjct 1 ATGGATCTGATTCAATCCTACGACGAAG-A-A-GAAGCCGTTGCTTCCTCGCCGGAATCT 57 Query 133 TCACCGCCTCGTATGTTAAAGGCGAAATCATCGGCGCCGGAGGTAGACGATACGGCACTA 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 58 TCACCGCCTCGTATGTTAAAGGCGAAATCATCGGCGCCGGAGGTAGACGATACGGCGTTA 117 Query 193 GCTCTCACGGTGGCTAACGTGAATCAATCGAAATCGAAGCCGATTGACCCGACTCAACAC 252 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 GCTCTCACGGTGGCTAGCGTGAATCAATCGAAATCGAAGCCGATTGACCCGACTCAACAC 177 Query 253 GTCGTCTT-TTATAACCCTACCCATGATCAGCTGTGGGCTCCGATGTT-CGGCCCCGCGC 310 |||||||| || |||||| |||||||| ||| ||||||||||||| || ||||||||||| Sbjct 178 GTCGTCTTGTT-TAACCCAACCCATGAGCAGATGTGGGCTCCGAT-TTACGGCCCCGCGC 235 Query 311 ATCCGTATGCGAAAGACGGGATCGCTCAAGGGATGCGGAATCATAAGCTAGGTTCTGTGG 370 |||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct 236 ATCCGTATGCTAAAGACGGGATCGCTCAAGGGATGCGTAATCACAAGCTAGGGTCTGTGG 295 Query 371 AAGATGCTTCGATTGGATCGTTTGGGTTTGAAGAGCAGTACCATACGTTTCATAAGTGCG 430 ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| || Sbjct 296 AAGATGCTTCGATTGGATCATTTGGGTTTGATGAGCAGTACAATACGTTTCATAAGTACG 355 Query 431 GTTACGCGGCGGATCCGTCTGGGATGAACTACGTCGGCGATGTTGAGGCGTTTAAGAAGA 490 |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||| Sbjct 356 GTTACGCGGCGGATCCGTCTGGGATGCATTACGTCGGCGATGTTGAGGCGTTGAAGCAGA 415 Query 491 ACGATGGTCTTTCGGTTTTTAATATTCCTCagagtgagcagaagcggaggaagattgaga 550 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 416 ACGATGGTCTTTCGGTTTATAATATTCCTCAGAGTGAGCAGAAGCGGAGGAAGATTGAGA 475 Query 551 ggagcaaagaggagagggaaggggaagagaaaaaggaagagattgagccggaagctgaga 610 || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 476 AGAATAAAGAGGAGAGGGAAGGGGAAGAGAAAAAGGAAGAGCTTGAGCCGGAAGCTGAGA 535 Query 611 aTCCGGAGACGGAAGCTTGGCTTAGGAAGAATAGGAAGAGTCCGTGGTCGAGGAAGAAGG 670 |||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 536 ATCCGGCGACGGAAGCTTGGCTTATGAAGAATAGGAAGAGTCCATGGTCGAGGAAGAAGG 595 Query 671 AGGTGGTTCAGGGAGAGTTGACGGAGGAGCAGAAGAAGTATGCGGAGGATCATGCCAAGA 730 || ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 596 AGTTGGTTCAGGGAGAGTTGACGGAGGAGCAGAAGAAGTATGCGGAGGATCACGCTAAGA 655 Query 731 AGAAGGAGGAGAAGGGACAACAAGGTGAAACCAAAGGAGAGCATTATGCGGATAAGAGTA 790 ||||||| ||||| ||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 656 AGAAGGAAGAGAAAGGACAACAAGGTGAAGCCAAAGGGGAGCATTATGCGGATAAGAGTA 715 Query 791 CCTTCCATGGCAAAGAGGAGAAAGATTATCAAGGAAGGTCTTGGATTGAGGCTCCTAAAG 850 | |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 716 CATTCCATGGCAAAGAGGAGAAAGATTACCAAGGAAGGTCTTGGATTGAGGCTCCAAAAG 775 Query 851 ATGCTAAGGCGAACAATGATCATTGCTACATTCCAAAACGTTTGGTTCATACATGGAGTG 910 |||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 776 ATGCAAAAGCGAACAATGATCATTGTTACATTCCAAAACGTTTGGTTCATACATGGAGTG 835 Query 911 GGCACACGAAAGGTGTTTCCGCTATTAGGTTCTTCCCAAAGCAAGGACATTTGCTTCTCT 970 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 836 GTCACACGAAAGGTGTTTCTGCTATTAGGTTCTTCCCAAAGCAAGGACATTTGCTTCTCT 895 Query 971 CTGCAGGTATGGATTGTAAGGTTAAGATTTGGGATGTGTATAACTCTGGTAAATGTATGA 1030 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 CTGCAGGTATGGATTGTAAGGTTAAGATTTGGGATGTGTATAACTCTGGTAAATGTATGA 955 Query 1031 GGACTTACATGGGTCACGCCAAAGCTGTGAGGGATATTTGCTTCTCCAATGATGGGTCTA 1090 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 956 GGACTTACATGGGTCATGCCAAAGCTGTGAGGGATATTTGCTTTTCCAATGATGGGTCTA 1015 Query 1091 AATTCTTGACTGCTGGGTATGATAAGAACATTAAGTATTGGGACACGGAAACTGGCCAAG 1150 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 AGTTCTTAACTGCTGGGTATGATAAGAACATTAAGTATTGGGACACGGAAACTGGCCAAG 1075 Query 1151 TTATATCGACTTTCTCCACTGGGAAGATTCCGTATGTGGTTAAGCTGAATCCGGATGATG 1210 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1076 TTATATCGACTTTCTCTACTGGGAAGATTCCGTATGTGGTGAAGCTGAATCCGGATGATG 1135 Query 1211 ACAAGCAGAACATTTTGTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATTA 1270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1136 ACAAGCAGAACATTTTGTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATCA 1195 Query 1271 ATACGGGGGAGGTTACGCAAGAGTATGATCAGCACTTGGGGGCAGTTAATACTATCACAT 1330 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 ATACGGGGGAGATTACACAAGAGTATGATCAGCACTTGGGGGCAGTTAATACTATCACAT 1255 Query 1331 TTGTGGACAATAACAGAAGATTTGTCACGTCGAGCGATGATAAGTCTCTCCGTGTTTGGG 1390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 TTGTGGACAATAACAGAAGATTTGTCACGTCGAGCGATGATAAGTCTCTCCGTGTTTGGG 1315 Query 1391 AATTTGGGATCCCGGTGGTTATCAAGTATATCAGTGAGCCTCATATGCATTCTATGCCTT 1450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 AATTTGGGATCCCGGTGGTTATCAAGTATATCAGTGAGCCTCATATGCATTCTATGCCTT 1375 Query 1451 CCATTTCTGTTCACCCGAATGGAAACTGGCTTGCTGCACAGAGTTTGGATAACCAGATTC 1510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 CCATTTCTGTTCACCCGAATGGAAACTGGCTTGCTGCACAGAGTTTGGATAACCAGATTC 1435 Query 1511 TGATCTACAGTACCCGAGAAAGGTTTCAGCTGAATAAAAAGAAGAGGTTTGCAGGGCACA 1570 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1436 TGATCTATAGTACCCGAGAAAGGTTTCAGCTGAATAAAAAGAAGAGGTTTGCAGGGCACA 1495 Query 1571 TTGTTGCCGGTTATGCATGCCAAGTTAACTTCTCGCCAGATGGACGGTTTGTAATGTCAG 1630 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1496 TTGTTGCCGGTTACGCATGCCAAGTTAACTTCTCCCCAGATGGACGGTTTGTAATGTCAG 1555 Query 1631 GAGATGGTGAGGGTAAGTGCTGGTTTTGGGACTGGAAGAGCTGCAAAGTGTTTAGGACTC 1690 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1556 GAGATGGTGAGGGTAAGTGCTGGTTTTGGGACTGGAAGAGCTGCAAAGTGTTTAGGACTC 1615 Query 1691 TTAAATGTCACAATGGAGTATGCATTGGAGCCGAGTGGCATCCTCTGGAACAGAGTAAAG 1750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1616 TTAAATGTCACAATGGAGTATGCATTGGAGCCGAGTGGCATCCTCTGGAACAGAGTAAAG 1675 Query 1751 TCGCAACTTGTGGTTGGGACGGCTTGATTAAGTACTGGGACTAA 1794 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1676 TCGCAACTTGTGGTTGGGACGGCTTGATTAAGTACTGGGACTAA 1719 > Ahg355139 jgi|Araly1|355139|fgenesh1_pg.C_scaffold_7002312 Length=1965 Score = 152 bits (82), Expect = 9e-36 Identities = 92/97 (95%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 747 ACAACAAGGTGAAACCAAAGGAGAGCATTATGCGGATAAGAGTACCTTCCATGGCAAAGA 806 ||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct 945 ACAACAAGGTGAAGCCAAAGGGGAGCATTATGCAGATAAGAGTACATTCCATGGCAAAGA 1004 Query 807 GGAGAAAGATTATCAAGGAAGGTCTTGGATTGAGGCT 843 ||||||||||||||||||||||||||||||| ||||| Sbjct 1005 GGAGAAAGATTATCAAGGAAGGTCTTGGATTAAGGCT 1041 > Ahg339306 jgi|Araly1|339306|fgenesh1_pg.C_scaffold_2001405 Length=1836 Score = 152 bits (82), Expect = 9e-36 Identities = 92/97 (95%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 747 ACAACAAGGTGAAACCAAAGGAGAGCATTATGCGGATAAGAGTACCTTCCATGGCAAAGA 806 ||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct 945 ACAACAAGGTGAAGCCAAAGGGGAGCATTATGCAGATAAGAGTACATTCCATGGCAAAGA 1004 Query 807 GGAGAAAGATTATCAAGGAAGGTCTTGGATTGAGGCT 843 ||||||||||||||||||||||||||||||| ||||| Sbjct 1005 GGAGAAAGATTATCAAGGAAGGTCTTGGATTAAGGCT 1041 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77970731515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5