BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10650.1 Length=1519 Score E Sequences producing significant alignments: (Bits) Value Ahg471187 jgi|Araly1|471187|fgenesh2_kg.1__1141__AT1G10650.2 1482 0.0 Ahg889815 jgi|Araly1|889815|Al_scaffold_0007_1801 171 2e-41 > Ahg471187 jgi|Araly1|471187|fgenesh2_kg.1__1141__AT1G10650.2 Length=1601 Score = 1482 bits (802), Expect = 0.0 Identities = 954/1024 (93%), Gaps = 24/1024 (2%) Strand=Plus/Plus Query 505 TGGGAGGTGGATGCACTGTTGATCCAGTAAACTACTTTGCTAACGATAACCTCGTTCCAA 564 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 590 TGGGAGGTGGATGCACTGTTGATCCAGTAAACTACTTTGCTAACGATAATCTCGTTCCAA 649 Query 565 TGATCCGCCCTAACAAAAGAGGAAGGGAAGCCGAAAGCATTAGTAACAACATCCAAAGAC 624 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 650 TGATTCGGCCTAACAAAAGAGGAAGGGAAGCCGAAAGCATTAGTAACAACATCCAAAGAC 709 Query 625 AACAGCAGAAGCTTCAAATGTCTTTGAACTATAATTATAACAACACTAGTGTTCGAGAAG 684 | | |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| Sbjct 710 -A-A-CAGAAGCTTCAAATGTCTTTGAACTACAATCATAACAACATTAGTGTTCGAGAAG 766 Query 685 AAGTGCCTAAAGAGAATCTAGTCTCAACTGGTCTGAGACTATCTTATGACGACGATGAAC 744 |||||| ||||||||||||||| || |||||||| |||||||||||||| |||||||||| Sbjct 767 AAGTGCGTAAAGAGAATCTAGTATCTACTGGTCTTAGACTATCTTATGATGACGATGAAC 826 Query 745 ACAATTCTTCAGTGACTTCTGCTAGTGGTAGCATTTTAGCTGCTTCTCCAATCTTTCAGT 804 ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 827 GCAACTCTTCAGTGACTTCTGCTAGTGGTGGCATTGTAGCTGCTTCTCCAATCTTTCAGT 886 Query 805 CACTCGATGATAGTCTTCGGATTGATCTCCATAGACAAAAAGATGAGTTTGACCAGTTCA 864 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 887 CACTCGATGATAGTCTTCGGATTGACCTCCATAGACAAAAAGATGAGCTTGACCAGTTCA 946 Query 865 TCAAGATCCAGGCAGCTCAAATGGCGAAAGGTGTGAGGGATATGAAACAGAGACACATCG 924 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 947 TCAAGATCCAGGCAGCTCAAATGGCGAAAGGTGTGAGAGATATGAAACAGAGACATATCG 1006 Query 925 CGTCTTTTCTCACAACATTAGAGAAAGGAGTGAGCAAGAAGCTTCAAGAGAAAGATCACG 984 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 CGTCTTTTCTCACTACATTAGAGAAAGGAGTGAGCAAGAAGCTTCAAGAGAAAGATCACG 1066 Query 985 AGATCAATGATATGAACAAGAAGAATAAAGAGCTTGTGGAGCGGATAAAGCAAGTGGCAA 1044 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1067 AGATCAATGACATGAACAAGAAGAATAAAGAGCTCGTGGAGCGGATAAAGCAAGTGGCAA 1126 Query 1045 TGGAAGCTCAGAATTGGCACTACAGAGCAAAGTACAATGAGTCTGTGGTTAATGTCTTAA 1104 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1127 CGGAAGCTCAGAATTGGCACTACAGAGCAAAGTACAATGAGTCTGTGGTTAATGTCTTAA 1186 Query 1105 AGGCAAATCTCCAACAAGCAATGTCACACAACAACAGTGTGATAGCTGCTGCAGATCAAG 1164 |||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||| Sbjct 1187 AGGCAAATCTCCAACAAGCAATGTCACACAACAACAATGTGATTGGTGCGGCAGATCAAG 1246 Query 1165 GCAAAGAAGGTTTTGGAGACAGCGAAATAGATGATGCAGCTTCATCATACATCGATCcaa 1224 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 1247 GCAAAGAAGGGTTTGGAGACAGTGAAATAGATGATGCAGCTTCATCATACATTGATCCAA 1306 Query 1225 acaacaataacaacaacaacaTGGGGATTCATCAGAGGATGAGATGCAAAATGTGCAACG 1284 ||||||| ||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1307 ACAACAA---CAAGA------TGGGGATTCATCAGAGGATGAGATGCAAAATGTGCAACG 1357 Query 1285 TCAAGGAAGTATCGGTGTTGATAGTGCCATGTCGGCACTTGAGTTTGTGTAAAGAATGTG 1344 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1358 GGAAGGAAGTATCGGTGTTGCTCGTGCCATGTCGGCACTTGAGTTTGTGTAAAGAATGTG 1417 Query 1345 ATGTATTCACTAAGATTTGTCCTGTATGCAAGTCTTTGAAAAGTTCTTGCGTCCAAGTCT 1404 ||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| Sbjct 1418 ATGTATTCACTAAGATTTGTCCTGTATGCAAGTCTTTGAAAAGTTCTAGCGTTCAGGTCT 1477 Query 1405 TCTTTTCTTGATT-TGTGACCAAA--TGGAACA---GAA--G--G-AAAAAGAGAATCCA 1453 ||||||||||| | |||||||||| ||||||| ||| | | ||||| |||||||| Sbjct 1478 TCTTTTCTTGAATCTGTGACCAAAACTGGAACAAAAGAAAAGAAGGAAAAATAGAATCCA 1537 Query 1454 TTATATAAGTCTTTCATACTCTTTTTaaaaaa-aTATTTTGTTATATAAATTTATTTGTA 1512 |||||||||||||||| |||||||| |||| | ||||||| |||||||| ||||||||| Sbjct 1538 TTATATAAGTCTTTCAAACTCTTTTCAAAAGATATATTTTACTATATAAAATTATTTGTA 1597 Query 1513 TCGG 1516 |||| Sbjct 1598 TCGG 1601 Score = 606 bits (328), Expect = 1e-172 Identities = 456/512 (89%), Gaps = 31/512 (6%) Strand=Plus/Plus Query 1 TCCCCCACTTCTTCCACCACTGTCCCGCTCCATCGCACCCGCTTTGCTTACCACATCCAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCCCCCACTTCTTCCACCACTGTCCCGCTCCATCGCACCCGCTTTGCTTACCACATCCAT 60 Query 61 C-At--t-cattcatttccttt-ctttctttcttcttcttccgtttcttttgcctctttc 115 | || | |||||||||| ||| |||||| |||||||||||||||||||||||||||||| Sbjct 61 CCATCATTCATTCATTTCATTTTCTTTCTCTCTTCTTCTTCCGTTTCTTTTGCCTCTTTC 120 Query 116 ttttgtcttcttccttctatttttttgtggctttAAATTTATTGGGttttgttcttcttc 175 ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 121 TTTTGTCTTCTTCCTTCAATTTTTT-GTGGCTTTAAATTTATTGGGTTTTGTTCTTCTTC 179 Query 176 ttcttctatagccgtttcatcttcacaata-gcatcttcttctt-t-ttttC--CCTGTC 230 | |||||||||||||||||||| || ||||||||||||| | |||| |||||| Sbjct 180 T------ATAGCCGTTTCATCTTCACA-TAAGCATCTTCTTCTTCTCTTTTTTTCCTGTC 232 Query 231 AAGATCCTGAATCATCGGATCTAGAAGGAAACTAGAGTTTGTGAAATCAGATTAAATCTT 290 |||||||||||||||||||||| ||||||||||||||||||||||||| ||| || |||| Sbjct 233 AAGATCCTGAATCATCGGATCTGGAAGGAAACTAGAGTTTGTGAAATCGGATGAA-TCTT 291 Query 291 GTGAGAAATCTCTGAAAAAGCTGCAGGTTTCTATA-CTTCTGTTAGTACTCTAATTCAAC 349 ||||||||||||||| ||| | | ||| ||| | ||| |||||||||||||||||| Sbjct 292 TTGAGAAATCTCTGAATAAGGTATAATTTT-TATTTCCTCTTTTAGTACTCTAATTCAAC 350 Query 350 CGAGAAAGTCGAATACATACACACATTCATAACACTTTTGAGGAAGATGTTAAGTGGAAA 409 |||| |||||||| ||| | || || | |||||||||||||| |||||||||| Sbjct 351 AGAGAGAGTCGAAT---TACTCG--TT--TA-C--TTTTGAGGAAGATGCTAAGTGGAAA 400 Query 410 CAATGGAAACACTGCACCACCGGTTTTCATGAACGAGAACCAGTTGCAATACCAGACAAA 469 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 401 CAATGGAAACACTGTACCACCGGTTTTCATGAACGAGAACCAGTTGCAATACCAGACAAA 460 Query 470 CCTACGATCGAATCAGCTTCACTTGCTCGGAA 501 ||||| ||||||||||||||||||||| |||| Sbjct 461 CCTACAATCGAATCAGCTTCACTTGCTTGGAA 492 > Ahg889815 jgi|Araly1|889815|Al_scaffold_0007_1801 Length=2640 Score = 171 bits (92), Expect = 2e-41 Identities = 120/134 (90%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 724 TATCTTATGACGACGATGAACACAATTCTTCAGTGACTTCTGCTAGTGGTAGCATTTTAG 783 |||||||||| |||||||| | ||| |||||||||| |||| ||||| |||||||| ||| Sbjct 2504 TATCTTATGATGACGATGACCGCAACTCTTCAGTGAGTTCTACTAGTTGTAGCATTGTAG 2563 Query 784 CTGCTTCTCCAATCTTTCAGTCACTCGATGATAGTCTTCGGATTGATCTCCATAGACAAA 843 |||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||| Sbjct 2564 CTGCTTCTCCAATCTTTCAGTCACTCCATGTTAGTCTTCGGATTGACCTCAATAGACAAA 2623 Query 844 AAGATGAGTTTGAC 857 ||||||| ||||| Sbjct 2624 AAGATGAACTTGAC 2637 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56868735785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5