BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G10740.1
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471206 jgi|Araly1|471206|fgenesh2_kg.1__1160__AT1G10740.1 2691 0.0
> Ahg471206 jgi|Araly1|471206|fgenesh2_kg.1__1160__AT1G10740.1
Length=1853
Score = 2691 bits (1457), Expect = 0.0
Identities = 1771/1909 (93%), Gaps = 76/1909 (4%)
Strand=Plus/Plus
Query 1 GGATAACAAAG-TTTTTTGTTGGATGATAAAAGAGACAGAGAGAGACGACGCATTTTCCT 59
||||||| ||| |||||||||||||||| | | | |||||||||||||||||||||||
Sbjct 1 GGATAAC-AAGTTTTTTTGTTGGATGAT---A-A-A-AGAGAGAGACGACGCATTTTCCT 53
Query 60 TTA-TTT-TCTCGGGGAAATTCAAAGTTTTCGAATTTTCTTCCTTTCTGGGTTTTCGTCA 117
||| ||| ||||||| |||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 54 TTATTTTCTCTCGGGAAAATTCAAAGTTTTCGAATTTTATTCCTTTCTGGGTTTTCGCCA 113
Query 118 AAGGAGCATCTTCTTTATGTTCTTTTGAAAGAAGGCTCTCTTCTCTATTTCTCTCCCCTC 177
|||||||||| ||||||||||||| |||||||||||||| ||| ||||| ||||||||
Sbjct 114 AAGGAGCATC--CTTTATGTTCTTTAGAAAGAAGGCTCTC-TCTGTATTTGTCTCCCCTG 170
Query 178 TTCCGGGGAGtttttga--tttttt-aggataaaggagattcctttacctcgattttttg 234
|| |||||||||||| | |||||| |||||||||||||||| |||| ||||| |||||
Sbjct 171 TTTCGGGGAGTTTTTCATTTTTTTTCAGGATAAAGGAGATTCTTTTATCTCGA--TTTTG 228
Query 235 cttttcatttttattaaatctccgatttttgatttttGGGGGAAGAAGTAGAAGAAGAAG 294
| ||||||||||||||| | | | || | | |||||||||||
Sbjct 229 -----C----TTATTAAATCTCCGA---TCG-----T---GG--G-A--AGAAGAAGAAG 263
Query 295 ATGATTAAGTTGTGGATGATGACTTCTCTCCAACTCGCGGAGCTCTTCGTGAGCTCTATT 354
||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 264 ATGATAAAGTTGTGGATGCTGACTTCTCTTCAACTCGCGGAGCTCTTCGTGAGCTCTCTT 323
Query 355 GTGCATTTGCTTTATGGGTTTTATATATTTAGCTCCGCCGTTGCCGGAGATATCTCTCAG 414
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 324 GTGCATTTGCTTTATGGGTTTTATATATTTAGCTCCGCTGTTGCCGGAGATATCTCTCAG 383
Query 415 ACGTTGAATGATTACTTGTTTAAGTCCAATGTCGCTTT------C---GGAGAAACCGGT 465
|||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 384 ACGTTGAATGATTACTTGTTTAAGTCCAATGTCGATTTCAACGACGTTGGAGAAACCGGT 443
Query 466 CAAAATCAAACCAATGTTGAGGGTTTGCCTCCTATTGTATTGGTTCATGGCATCTTTGGA 525
|||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 444 CAAAATCAAAGCAATGTTGAGGGTTTGCCTCCAATTGTATTGGTTCATGGGATCTTTGGA 503
Query 526 TTTGGCAAAGGGAGATTAGGAGGCTTATCTTACTTTGGCGGTGCTGAGAAGAAAGATGAG 585
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 504 TTTGGCAAAGGGAGATTAGGAGGCTTATCTTACTTTGGTGGTGCTGAGAAGAAAGATGAG 563
Query 586 AGGGTTCTTGTTCCTGATTTGGGTTCCTTAACAAGCATCTATGACAGGGCAAGGGAATTG 645
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 564 AGGGTTCTCGTTCCTGATTTGGGATCCTTAACAAGCATCTATGATAGGGCAAGGGAATTG 623
Query 646 TTCTATTATTTGAAAGGAGGGGTAGTTGATTTTGGCGAAGAGCATAGCGAGGCTTGTGGA 705
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 624 TTCTATTACTTGAAAGGAGGGGTAGTTGATTTTGGCGAAGAGCACAGCGAGGCTTGTGGA 683
Query 706 CATTCTCGGTTTGGAAGAAGATACGAACAAGGGCAATACCCTGAATGGGATGAGGATCAT 765
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 684 CATTCTCGGTTTGGAAGAAGATACGAAGAAGGGCAATACCCTGAATGGGATGAGGATCAT 743
Query 766 CCTATTCATTTTGTGGGGCATTCAGCGGGTGCGCAAGTTGTGCGTGTATTGCAGCAAATG 825
||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 744 CCTATTCATTTTGTGGGACATTCAGCGGGTGCTCAAGTTGTGCGCGTGTTGCAGCAAATG 803
Query 826 CTTGCAGATCAGGCATTTGAAGGGTTTGAAGAAACGAATG-AGAATTGGGTTCTGAGTGT 884
||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 804 CTTGCAGATAAGGCATTTGAAGGGTTTGAAGAAACGAGTGAAG-ATTGGGTTCTGAGTGT 862
Query 885 GACATCGTTATCCGGGGCATTCAATGGAACTACCAGGACCTACTTAGATGGCATGCGGAC 944
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 863 GACTTCGTTATCCGGGGCATTCAATGGAACTACCAGGACTTACTTAGATGGCATGCGGAC 922
Query 945 AGATGATGGAGTGAGCATGAAACCGATATGTTTGTTGCAGCTGTGTCGTATAGGCGTGAT 1004
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 923 AGATGATGGAGTGAGCATGAAACCGATATGTCTGTTGCAGCTGTGTCGTATAGGCGTGAT 982
Query 1005 AATGTACGATTGGTTGGACATTTCATGGCTAAAGACTTATTACAATTTCGGGTTCGATCA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 AATGTACGATTGGTTGGACATTTCATGGCTAAAGACTTATTACAATTTCGGGTTCGATCA 1042
Query 1065 CTTCAACATTTCTTGGAAGAAGA-CCGGTGTGAGAGGTCTCGTTGATTGCCTAATGGGAA 1123
||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 1043 CTTCAACATTTCTTGGAAGAA-ATCCGGTGTGAGAGGTCTCGTTGATTGCCTCATGGGAA 1101
Query 1124 ACGCAGGTCCTTTTGCTTCTGGCGATTGGATCTTACCTGATCTCACAATCCAAGGCTCAA 1183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1102 ACGCAGGTCCTTTTGCTTCTGGCGATTGGATCTTACCTGATCTCACGATCCAAGGCTCAA 1161
Query 1184 CAAGTATTAACTCCAATCTCCAGACGTTCCCAAACACTTACTACTTCAGCTACGCGACTA 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 CAAGTATTAACTCCAATCTCCAGACGTTCCCAAACACTTACTACTTCAGCTACGCGACTA 1221
Query 1244 AACGCACCCGCAGAGTCATGGGTATGACAATCCCTTCAGGTGTTCTTGGAATCCACCCGA 1303
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1222 AACGTACCCGCAGAGTCATGGGCATGACAATCCCTTCAGGTGTTCTTGGAATCCACCCGA 1281
Query 1304 TGCTCTTCCTCCGCGTCTTTCAGATGAGCCAATGGAAATTCCCACAAGATGTCTCTCCTC 1363
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1282 TGCTCTTCCTCCGCGTTTTTCAGATGAGCCAATGGAAATTCCCACAAGATGTATCTCCTC 1341
Query 1364 CTTATAAAGGCTACAGGGATGAGGACTGGCAAGAGAACGACGGGGCATTGAACACAATAT 1423
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1342 CTTATAAAGGCTACAGGGATGAGGACTGGCAAGAGAACGACGGTGCATTGAACACGATAT 1401
Query 1424 CAATGACACATCCGAGGCTACCTGTTGAGCATCCGAGCCGGTTCATAAGGAGCGATTCGG 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 CAATGACACATCCGAGGCTACCTGTTGAGCATCCGAGCCGGTTCATAAGGAGCGATTCGG 1461
Query 1484 AATGTCAAACATTACAACCCGGGATCTGGTATTATAAGATAGTGGAAGCAGATCACATAA 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 AATGTCAAACATTACAACCCGGGATCTGGTATTATAAGATAGTGGAAGCAGATCACATAA 1521
Query 1544 TGTTCATAGTGAACAGAGAGAGAGCTGGTGTTCAGTTTGATCTGATATACGACAGCATCT 1603
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1522 TGTTCATAGTGAACAGAGAGAGAGCTGGAGTTCAGTTTGATCTGATATACGACAGTATCT 1581
Query 1604 TCCAACGTTGCAGGAAACATGTTTTTAGAAAGATTCCTCAGACTCTCCCCAATCAATCTC 1663
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1582 TCCAACGCTGCAGGAAACATGTTTTTAGAAAGATTCCTCAGTCTCTCCCCAATCAATCTC 1641
Query 1664 CTTCTTCTCCTCGTTCATCATCATCACCCAGAATAAACAACTTTGTACATTGATCACATG 1723
||||| | | |||||||||| | | | |||| ||||||||||||||||||||| |
Sbjct 1642 CTTCT-C-C-TCGTTCATCA-C--C-C--AGAAAAAACAACTTTGTACATTGATCT--T- 1689
Query 1724 Caaaaaaaa-a-aTGTTTTAGGGTTGTTACGTTGAGGGCTTAAGTTTTTGTTTAGGCTAT 1781
|||||||| | |||||||||||||| || |||||||||||||||| || ||||||||||
Sbjct 1690 -AAAAAAAATATATGTTTTAGGGTTGATATGTTGAGGGCTTAAGTTGTT-TTTAGGCTAT 1747
Query 1782 TTACTACTAATACAGATTATTCATTGTTCTTCTTGTTCTCCTCT-CGATTTGTTGTACTG 1840
||| |||||||||||||||||||||||||||||| ||||||| | | ||||||||||||
Sbjct 1748 TTATTACTAATACAGATTATTCATTGTTCTTCTTATTCTCCT-TGCTATTTGTTGTACTA 1806
Query 1841 TAAAATATATATCTTCCATTTTGAAAATTATAATATTTGTTAGTTCGTC 1889
||||| | || ||| |||||||||| ||||||||||||||||||||||
Sbjct 1807 TAAAAC-T-TACCTTTCATTTTGAAAGTTATAATATTTGTTAGTTCGTC 1853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71000216680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5