BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G10940.2 Length=1791 Score E Sequences producing significant alignments: (Bits) Value Ahg919903 jgi|Araly1|919903|scaffold_101184.1 1757 0.0 Ahg475237 jgi|Araly1|475237|fgenesh2_kg.2__367__AT1G60940.1 1064 0.0 Ahg951172 jgi|Araly1|951172|scaffold_803059.1 520 2e-146 > Ahg919903 jgi|Araly1|919903|scaffold_101184.1 Length=1137 Score = 1757 bits (951), Expect = 0.0 Identities = 1085/1145 (95%), Gaps = 27/1145 (2%) Strand=Plus/Plus Query 433 GCGAGAATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTTGGAGTTGCC 492 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 17 GCGAGAATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTCGGAGTGGCC 76 Query 493 AGGCTCATGAAGGTCAAAAACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTGGT 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 AGGCTCATGAAGGTCAAAAACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTGGT 136 Query 553 CCTAAGATTGATGAGAATGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCATCCG 612 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 137 CCTAAGATTGATGAGAACGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCATCCG 196 Query 613 AATATAATCCGGTTCAAGGAGGTGGTGTTGACTCCAACCCATCTTGCCATTGCCATGGAA 672 |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 197 AATATAATCCGGTTTAAGGAGGTTGTGTTGACTCCAACCCATCTTGCCATTGCTATGGAA 256 Query 673 TATGCTGCTGGTGGTGAACTATTCGAGCGTATATGCAGTGCTGGAAGATTTAGTGAGGAT 732 |||||||||||||||||||||||||||||||| ||||||||||||||| || | | | | Sbjct 257 TATGCTGCTGGTGGTGAACTATTCGAGCGTATCTGCAGTGCTGGAAGA-TT--T-A-G-T 310 Query 733 GAGGAGGAAGGGAACAAGAGAAAACATGCGAGATATTTCTTCCAGCAGCTTATATCAGGT 792 ||| | | ||| |||||||| |||||||| || |||||||||||| Sbjct 311 ------GAA--G---ATGAG-------GCGAGATACTTCTTCCAACAACTTATATCAGGT 352 Query 793 GTTAGCTATTGCCATGCTATGCAAATATGCCATAGAGATCTGAAGCTCGAGAATACGCTC 852 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 353 GTTAGTTATTGCCATGCTATGCAAATATGCCACAGAGATCTGAAGCTCGAGAATACGCTC 412 Query 853 TTGGATGGAAGTCCTGCTCCACGTCTGAAAATCTGTGATTTTGGTTATTCCAAGTCCTCT 912 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 CTGGATGGAAGTCCTGCTCCACGTCTGAAAATCTGTGATTTTGGTTATTCCAAGTCCTCT 472 Query 913 CTGCTGCACTCTAGGCCCAAATCAACAGTTGGAACTCCAGCATATATTGCACCTGAGGTC 972 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 473 CTGCTGCACTCTAGGCCCAAATCAACAGTTGGAACTCCAGCGTATATTGCACCTGAGGTC 532 Query 973 CTTTCTCGAAGAGAATATGATGGCAAGATGGCTGATGTATGGTCTTGTGGTGTGACTCTT 1032 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 533 CTTTCTCGGAGAGAATATGATGGCAAGATGGCTGATGTATGGTCCTGTGGTGTGACTCTT 592 Query 1033 TATGTCATGCTGGTTGGAGCATACCCATTTGAAGACCAGGAAGACCCCAAGAACTTCAGG 1092 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 593 TATGTCATGCTGGTTGGAGCGTACCCATTTGAAGACCAGGAAGACCCCAAAAACTTCAGG 652 Query 1093 AAAACAATACAAAAAATAATGGCTGTCCAGTACAAGATCCCGGACTACGTCCATATCTCA 1152 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 653 AAAACAATACAAAAAATAATGGCTGTCCAGTACAAGATCCCGGACTACGTCCACATCTCA 712 Query 1153 CAGGATTGTAAAAATCTCCTTTCCCGTATATTTGTCGCCAATTCACTCAAGAGGATCACC 1212 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 713 CAGGATTGTAAACATCTCCTTTCCCGTATATTTGTCGCCAATTCACTCAAGAGGATAACC 772 Query 1213 ATTGCAGAAATCAAGAAACATTCATGGTTCCTAAAGAATTTGCCAAGGGAACTCACAGAG 1272 |||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| Sbjct 773 ATTGCAGAAATCAAGAAACACCCATGGTTCCTGAAGAATTTGCCAAGAGAACTCACAGAG 832 Query 1273 ACAGCTCAAGCTGCATATTTCAAGAAAGAGAACCCAACCTTCTCCCTTCAGACCGTTGAA 1332 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 833 ACAGCTCAAGCTGCATATTTCAAGAAAGAGAACCCAACCTTCTCCCTCCAGACTGTTGAA 892 Query 1333 GAGATCATGAAGATAGTGGCTGACGCCAAAACACCGCCTCCTGTTTCCCGATCCATCGGA 1392 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 893 GAGATCATGAAGATAGTGGCTGACGCCAAAACACCGCCTCCTGTTTCCCGGTCCATCGGA 952 Query 1393 GGTTTTGGCTGGGGAGGAAATGGggatgcagatggaaaagaggaagatgcagaagacgtg 1452 ||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||| Sbjct 953 GGTTTTGGCTGGGGAGGAAATGGAGATGTAGAGGGAAAGGAGGAAGATGCAGAAGACGTG 1012 Query 1453 gaggagg-a-a-gaggaggaggtggaagaagaggaagacgatgaggaTGAATACGATAAG 1509 ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1013 GAGGAGGAAGAGGAGGAGGAGGTGGAAGAAGAGGAAGACGATGAGGATGAATACGATAAG 1072 Query 1510 ACTGTAAAGGAAGTACACGCAAGTGGAGAAGTGAGAATAAGTTGATATTTTGGTTTTTGG 1569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 ACTGTAAAGGAAGTACACGCAAGTGGAGAAGTGAGAATAAGTTGATATTTTGGTTTTTGG 1132 Query 1570 TCTGT 1574 ||||| Sbjct 1133 TCTGT 1137 > Ahg475237 jgi|Araly1|475237|fgenesh2_kg.2__367__AT1G60940.1 Length=1585 Score = 1064 bits (576), Expect = 0.0 Identities = 871/1009 (86%), Gaps = 38/1009 (4%) Strand=Plus/Plus Query 438 AATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTTGGAGTTGCCAGGCT 497 |||||||||||||||||| || |||||||| |||||||||||||||||||| || ||||| Sbjct 276 AATGGACAAGTACGAGCTTGTTAAAGACATCGGTGCTGGGAATTTTGGAGTGGCTAGGCT 335 Query 498 CATGAAG-GTCAAAAACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTGGTCCTA 556 |||| || ||||||||||| || ||||| ||||| |||||||||||||||||||| || | Sbjct 336 CATG-AGAGTCAAAAACTCCAAAGAACTCGTTGCTATGAAGTACATCGAGCGTGGCCCAA 394 Query 557 AGATTGATGAGAATGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCATCCGAATA 616 ||||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||| |||| Sbjct 395 AGATTGATGAGAACGTGGCGAGAGAGATTATTAATCATAGATCACTTCGTCATCCCAATA 454 Query 617 TAATCCGGTTCAAGGAGGTGGTGTTGACTCCAAC-C-CATCTTGCCATTGCCATGGAATA 674 |||||||||| ||||||||||| ||||| ||||| | |||| |||||||| ||||||| Sbjct 455 TAATCCGGTTTAAGGAGGTGGTTTTGACACCAACACACATC--GCCATTGCTATGGAATT 512 Query 675 TGCTGCTGGTGGTGAACTATTCGAGCGTATATGCAGTGCTGGAAGATTTAGTGAGGATGA 734 ||||||||| ||||| |||| ||||||||||| |||||||||||||| ||||||||| Sbjct 513 TGCTGCTGGCGGTGAGTTATTTGAGCGTATATGTAGTGCTGGAAGATTCAGTGAGGAT-- 570 Query 735 GGAGGAAGGGAACAAGAGAAAACATGCGAGATATTTCTTCCAGCAGCTTATATCAGGTGT 794 | | || | | || || | ||| ||||||||||||||||| || || Sbjct 571 ----G-A-GG--C-A-AG-----AT-----A-CTTT-TTCCAGCAGCTTATATCTGGAGT 608 Query 795 TAGCTATTGCCATGCTATGCAAATATGCCATAGAGATCTGAAGCTCGAGAATACGCTCTT 854 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 609 CAGCTATTGCCATGCTATGCAAATATGCCATAGAGATCTGAAGCTCGAAAATACCCTCTT 668 Query 855 GGATGGAAGTCCTGCTCCACGTCTGAAAATCTGTGATTTTGGTTATTCCAAGTCCTCTCT 914 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 669 GGATGGAAGTCCTGCTCCACGCCTGAAAATCTGTGATTTTGGTTATTCCAAGTCCTCACT 728 Query 915 GCTGCACTCTAGGCCCAAATCAACAGTTGGAACTCCAGCATATATTGCACCTGAGGTCCT 974 | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 729 GTTGCACTCTATGCCCAAATCAACTGTTGGAACTCCAGCATATATTGCACCTGAGGTTCT 788 Query 975 TTCTCGAAGAGAATATGATGGCAAGATGGCTGATGTATGGTCTTGTGGTGTGACTCTTTA 1034 |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 TTCTCGCGGAGAGTATGATGGCAAGATGGCTGATGTATGGTCTTGTGGTGTGACTCTTTA 848 Query 1035 TGTCATGCTGGTTGGAGCATACCCATTTGAAGACCAGGAAGACCCCAAGAACTTCAGGAA 1094 |||||||||||| ||||||||||||||||||||||| || || || || ||||||| || Sbjct 849 TGTCATGCTGGTGGGAGCATACCCATTTGAAGACCAAGAGGATCCTAAAAACTTCAAAAA 908 Query 1095 AACAATACAAAAAATAATGGCTGTCCAGTACAAGATCCCGGACTACGTCCATATCTCACA 1154 ||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 909 AACAATACAAAGAATAATGGCTGTCAAGTACAAGATCCCGGACTATGTCCATATCTCACA 968 Query 1155 GGATTGTAAAAATCTCCTTTCCCGTATATTTGTCGCCAATTC-ACTCAAGAGGATCACCA 1213 ||||| ||| ||||||| |||||||||||||||||||| || | | |||||||| | | Sbjct 969 AGATTGCAAACATCTCCTCTCCCGTATATTTGTCGCCAACTCGAAT-AAGAGGATTAAGA 1027 Query 1214 TTGCAGAAATCAAGAAACATTCATGGTTCCTAAAGAATTTGCCAAGGGAACTCACAGAGA 1273 | || || |||||||||||| |||||||||||||||| ||||||||||||| ||||| | Sbjct 1028 TAGCTGAGATCAAGAAACATCCATGGTTCCTAAAGAACCTGCCAAGGGAACTTACAGAAA 1087 Query 1274 CAGCTCAAGCTGCATATTTCAAG-AAAGAGAACCCAACCTTCTCCCTTCAGACCGTTGAA 1332 |||||||||||| ||| |||| | ||||||||||| || ||||| || || | || ||| Sbjct 1088 CAGCTCAAGCTGTATACTTCA-GTAAAGAGAACCCGACATTCTCGCTCCAAAGTGTCGAA 1146 Query 1333 GAGATCATGAAGATAGTGGCTGACGCCAAAACACC-GCCTCCTGTTTCCCGATCCATCGG 1391 |||||||||||||| |||| || || ||||| || || ||||||||| ||||| || || Sbjct 1147 GAGATCATGAAGATTGTGGAAGAGGCAAAAACTCCAGC-TCCTGTTTCTCGATCGATTGG 1205 Query 1392 AGGTTTTGGCTGGGGAGGA-AATGGggatgcagatggaaaagaggaaga 1439 || ||||| ||||||||| || | ||||| || || | |||||||| Sbjct 1206 AGCATTTGGGTGGGGAGGAGAA-GAAGATGCCGAGGGCATGGAGGAAGA 1253 > Ahg951172 jgi|Araly1|951172|scaffold_803059.1 Length=1111 Score = 520 bits (281), Expect = 2e-146 Identities = 721/927 (78%), Gaps = 55/927 (6%) Strand=Plus/Plus Query 436 AGA-ATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTTGGAGTTGC-CA 493 ||| ||||| ||||| ||| | ||||| || | || |||||||||||||| || || | Sbjct 17 AGAGATGGATAAGTATGAGGTTGTGAAGGATTTGGGAGCTGGGAATTTTGGTGTGGCTC- 75 Query 494 GGC-TCATGAAGGTCA-AAA-ACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTG 550 | | || | | | || ||| | |||| ||||| ||||||||||| || || ||| | | Sbjct 76 GTCTTC-T-TA-GACACAAAGAGACTAAAGAACTCGTTGCCATGAAATATATTGAGAGAG 132 Query 551 GTC-CTAAGATTGATGAGAATGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCAT 609 ||| | ||||||||||||||||| || |||||||| || ||||| ||||||||| | ||| Sbjct 133 GTCGC-AAGATTGATGAGAATGTTGCGAGAGAGATTATCAATCATAGATCACTTAGGCAT 191 Query 610 CCGAATATAATCCGGTTCAAGGAGGTGGTGT-TGACTCCAACCCATCTTGCCATTGCCAT 668 || ||||| ||| | |||||||||||||| | |||||||||| |||||||| |||| || Sbjct 192 CCTAATATCATCAGATTCAAGGAGGTGGT-TCTGACTCCAACTCATCTTGCTATTGTAAT 250 Query 669 GGAATATGCTGCTGGTGGTGAACTATTCGAGCGTATATGCAGTGCTGGAAGATTTAGTGA 728 |||||||||| |||| || || || || || | || || | |||||| ||| | | | Sbjct 251 GGAATATGCTTCTGGAGGAGAGCTCTTTGAAAGAATCTGTAATGCTGGTAGA--T--TCA 306 Query 729 GGATGAGGAGGAAGGGAACAAGAGAAAACATGCGAGATATTTCTTCCAGCAGCTT-ATAT 787 | | ||| | | ||| || ||||| ||||| |||||| || || | Sbjct 307 -G-T------GAA--G--C-TGAG-------GCTAGATACTTCTTTCAGCAG-TTGATTT 345 Query 788 CAGGTGTTAG-CTATTGCCATGCTA-TGCAAATATGCCATAGAGATCTGAAGCTCGAGAA 845 || | | | || || ||| | | |||||||||| ||||||||| ||||||| ||||| Sbjct 346 GTGGCG-TGGATTACTGTCATTC-ACTGCAAATATGTCATAGAGATTTGAAGCTTGAGAA 403 Query 846 TACGCT-CTTGGATGGAAGTCCTGCTCCACGTCTGAAAATCTGTGATTTTGGTTATTCCA 904 || || ||| ||||| || ||||| || | |||||||||||||||||||||||| |||| Sbjct 404 CACACTGCTT-GATGGTAGCCCTGCCCCGCTTCTGAAAATCTGTGATTTTGGTTACTCCA 462 Query 905 AGTCCTCTCTGCTGCACTCTAGGCCCAAATCAACAGTTGGAACTCCAGCATATATTGCAC 964 |||| |||||||| |||||||| || |||||||| ||||| |||||||| || || |||| Sbjct 463 AGTCATCTCTGCTTCACTCTAGACCTAAATCAACTGTTGGGACTCCAGCTTACATCGCAC 522 Query 965 CTGAGGTCCTTTCTCGAAGAGAATATGATGGCAAG-ATGGCTGATGTATGGTCTTGTGGT 1023 |||| || ||||| |||||||||||||| || ||| || || ||||| ||||| |||||| Sbjct 523 CTGAAGTTCTTTCCCGAAGAGAATATGACGGAAAGCAT-GCGGATGTTTGGTCCTGTGGT 581 Query 1024 GTGACTCTTTATGTCATGCTGGTTGGAGCATACCCATTTGAAGACCAGGAAGACCCCAAG 1083 |||||||||||||| ||| ||||||||| || || |||||||||| || || || || Sbjct 582 GTGACTCTTTATGTGATGTTGGTTGGAGGTTATCCGTTTGAAGACCCCGATGA-TCCGAG 640 Query 1084 -AACTTCAGGAAAACAATACAAAAAATAATGGCTGTCCAGTACAAGATCCCGGACTACGT 1142 ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| Sbjct 641 AAACTTCAGGAAAACAATCCAACGTATAATGGCTGTCCAGTACAAGATCCCGGATTACGT 700 Query 1143 CCATATCTCACAGGATTGTAAAAATCTCCTTTCCCGTATATTTGTCGCCAATTCA-CTCA 1201 || || || ||||| |||||| | || || || || ||||||||| | |||||| || | Sbjct 701 TCACATATCGCAGGAGTGTAAACACCTTCTCTCTCGCATATTTGTCACTAATTCAGCT-A 759 Query 1202 AGAGGATCAC-CATTGCAGAAATCAAGAAACATTCATGGTTCCTAAAGAATTTGCCAAGG 1260 |||| ||||| | || ||| |||||||| ||| |||||| | ||||||| ||||||| | Sbjct 760 AGAGAATCACAC-TTAAAGAGATCAAGAAGCATCCATGGTACTTAAAGAACTTGCCAAAG 818 Query 1261 GAACTCACAGAGACAGCTCAAGCTGCATATTTCAAGAAAGAGAACC-CAACCTTCTCCCT 1319 || || |||||| | |||||||| || || | ||||| ||| |||| | | ||| ||||| Sbjct 819 GAGCTTACAGAGTCTGCTCAAGCAGCGTACTACAAGAGAGA-AACCACGAGCTTTTCCCT 877 Query 1320 TCAGACCGTTGAAGAGATCATGAAGAT 1346 || | ||| || || || |||||||| Sbjct 878 CCAAAGCGTAGAGGACATAATGAAGAT 904 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67229282425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5