BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11020.1 Length=1417 Score E Sequences producing significant alignments: (Bits) Value Ahg471237 jgi|Araly1|471237|fgenesh2_kg.1__1191__AT1G11020.1 1997 0.0 > Ahg471237 jgi|Araly1|471237|fgenesh2_kg.1__1191__AT1G11020.1 Length=1377 Score = 1997 bits (1081), Expect = 0.0 Identities = 1304/1403 (93%), Gaps = 49/1403 (3%) Strand=Plus/Plus Query 35 AATAAAGAAGCTTTCGTTTCTCTCTCGCATTGACCCTTCTTCTCCAGTTTTATGTTTTGC 94 ||||||||||||||| ||||||||||||||||| | || |||| | |||||| Sbjct 1 AATAAAGAAGCTTTCTTTTCTCTCTCGCATTGA-----C--CT----TTTT-T-TTTTGC 47 Query 95 CTCTCTCCCACTTCTGTAAATAATCTTCTCACATCCCCGCACGATTATTCTCTAGCCGAT 154 |||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 48 CTCTCT-CCACTTCTG----TAATCTTCTCACATCCCCGCACGATTATTCTCCAGCCGAT 102 Query 155 CAACGAACACAGAGACGCTAATGTATTTGACTCGATTCGAATCATTAGTCCTCTAATCAC 214 |||||||||||||||||||||||| ||||| |||||||||||| || |||||| ||||| Sbjct 103 CAACGAACACAGAGACGCTAATGTGTTTGATTCGATTCGAATCCTTCTTCCTCTGATCAC 162 Query 215 ACCGATTGATTTCCACCCACAGA---TTT-CTT-GTCTG-AAATTTAGGGTTAGCGAAGG 268 ||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||| Sbjct 163 ACCGATTGATTTCCACCCACAGATTTTTTCCTTCTTCTGAAAATTTAGGGTTAGCGAAGG 222 Query 269 TTTGGATCAATGATGCAAGGTGAAGTACAATTGCAGCCACCGGATTCACAGAAACTAAGT 328 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 223 TTT-GATCAATGATGCAAGGTGAAGTACAATTGCAGCCACCGGATTCACAAAAACTAAGT 281 Query 329 GATTCCGCTCCTTTGTTAGGAGATCACACCAATTCTTC---TTCGGCGTC-TC--C-T-T 380 ||||||||||||||||||||||| |||||||||||||| ||| | || || | | | Sbjct 282 GATTCCGCTCCTTTGTTAGGAGACCACACCAATTCTTCATTTTCATCTTCTTCGGCGTCT 341 Query 381 -CTGCTGCGTCTGTGGTGGCAGGAAATAGCGATGAGATAAAGGCTGAAGAAGATTTAGAG 439 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 342 CCTTCTGCGTCTGTGGTGGCAGGAAATAGCGATGAGATAAAGGCT---GAAGATTTAGAG 398 Query 440 AACGATGCTTCTTCAGCTCCTTGTTGTCGTATTTGTTTGGAGGACGATAGTGAATTGTTA 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 399 AACGATGCTTCTTCAGCTCCTTGTTGTCGTATTTGTTTGGAGGACGATAGTGAATTGTTA 458 Query 500 GGCGATGAATTGATTTCACCTTGTATGTGTAAAGGCACTCAACAATTCGTGCATCGCTCA 559 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 459 GGCGATGAATTGATATCACCTTGTATGTGTAAAGGCACTCAACAATTCGTGCATCGTTCA 518 Query 560 TGTCTCGATCATTGGCGATCGGTTAAAGAAGGTTTTGCTTTCTCTCACTGTACTACTTGC 619 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 519 TGTCTCGATCATTGGCGATCGGTCAAAGAAGGTTTTGCTTTCTCTCACTGCACTACTTGC 578 Query 620 AAAGCACAGTTTCATCTGAGAGTCGAACCCTTTGAGGATAACAATTCGTGGCGTAGAAAA 679 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| Sbjct 579 AAAGCACAGTTTCATCTGAGAGTCGAACCTTTTGAGGATAACAATTCTTGGCGTCGAAAA 638 Query 680 GCTAAATTCAGACTCTTTGTCGCAAGAGATGTGCTTTTGGTTTTCTTAGCTGTGCAGACT 739 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 639 GCTAAATTCAGACTCTTTGTCGCAAGAGATGTGCTTTTGGTATTCTTAGCTGTGCAGACT 698 Query 740 GTTATCGCTGTGATGGCCGGATTCGCATATATGATGGACAAAGACGGAGAGTTTCGCAAC 799 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 699 GTTATTGCTGTGATGGCCGGATTGGCATATATGATGGACAAAGACGGAGAGTTTCGCAAC 758 Query 800 TCTTTCAACGATGATTGGGATCGTATTTTGTCGAAACATCCCATCCCGTTTTATTACTGC 859 |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 759 TCTTTCAATGATGATTGGGATCGTATATTGTCGAAACATCCCATCCCCTTTTATTACTGC 818 Query 860 ATTGGGGTTATATCCTTCTTTGTGCTGACTGGATTTCTTGGAATCATTCTACATTGCTCT 919 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 819 ATTGGGGTTATATCCTTCTTTGTGCTGACTGGATTTCTTGGAATCATTCTGCATTGCTCT 878 Query 920 GCTCTCAACGGTAATGACCCGAGGATGGCTGGATGCCAGAACTGCTGTTATGGATGGGGT 979 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879 GCTATTAACGGTAATGACCCGAGGATGGCTGGATGCCAGAACTGCTGTTATGGATGGGGT 938 Query 980 GTCTTGGATTGTTTCCCTGCTTCAATGGAAGCTTGTTTCGCTCTTGTTGTTGTTTTTGTC 1039 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 939 GTCTTGGATTGTTTCCCTGCTTCAATGGAAGCATGTTTCGCTCTTGTTGTTGTCTTTGTC 998 Query 1040 GTCATCTTTGCCATTCTTGGTTTAGCGTATGGGTTTCTTGCTGCAACTATGGCTATCCAA 1099 |||||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||| Sbjct 999 GTCATCTTCGCCATTCTTGGTCTAGCTTATGGGTTTCTTGCTGCTACTATGGCTATCCAA 1058 Query 1100 AGGATATGGCAGAGACATTACCATATTCTCACCAAGCGAGAGCTCACAAAGGAGTACATT 1159 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1059 AGGATATGGCAGAGACATTACCATATTCTCACCAAGCGAGAGCTCACAAAAGAGTACATC 1118 Query 1160 GTGGAGGATCTTCACGGAAGTTACACTCCCCCGAAGCTGGATGCAGAGCACGAAGGAAGA 1219 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1119 GTGGAGGATCTTCATGGAAGTTACACTCCCCCGAAGCTGGATGCGGAGCACGAAGGAAGA 1178 Query 1220 CTGAAAATGCTGAAACTTCTGTGACCGTGTTTT-TT-AACTGTCAAATAAAGGTTGTAAG 1277 ||||||||||||||||||||||||||||||||| || |||||||||||||||||| || | Sbjct 1179 CTGAAAATGCTGAAACTTCTGTGACCGTGTTTTCTTTAACTGTCAAATAAAGGTTCTATG 1238 Query 1278 GAGTTTCGGGCACATGAGAGAGACGAGTTCA-TACGTATAT----GTTCACAGAG-TGTC 1331 ||||||||||||||| |||||||| |||||| ||| || || |||||||||| |||| Sbjct 1239 GAGTTTCGGGCACATTAGAGAGACAAGTTCACTACATACATCTTTGTTCACAGAGATGTC 1298 Query 1332 TTTCTTTTCTTTATCATGCGATGAAAAGTACCTAATGGATATTTTGTCTTATATATATTT 1391 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1299 TTTCTTTTCTTTATCATG-GATGAAAAGTACCTAATGGATATGTTGTCTTATATATATTT 1357 Query 1392 ATTATAATTATGGTATGAGGTGA 1414 || || | ||| |||||||||| Sbjct 1358 ATGAT--T-ATGATATGAGGTGA 1377 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52983530795 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5