BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11170.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value Ahg910866 jgi|Araly1|910866|Al_scaffold_0001_1120 2095 0.0 Ahg475199 jgi|Araly1|475199|fgenesh2_kg.2__329__AT1G61240.4 1011 0.0 > Ahg910866 jgi|Araly1|910866|Al_scaffold_0001_1120 Length=1311 Score = 2095 bits (1134), Expect = 0.0 Identities = 1258/1316 (96%), Gaps = 16/1316 (1%) Strand=Plus/Plus Query 231 ATGATACATGGTTTGCCATCTATGAAGTCTATCAAATCATTGAAGTCACTTGTTAAAAGA 290 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGATACATGGTTTGCCATCTATGAAGTCGATCAAATCATTGAAGTCACTTGTTAAAAGA 60 Query 291 AAAACCAATGCTCAAGAAGTGAGTAAATCCGGGTGGAAAATGAAGCCCTTTTTGGCTCTC 350 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 61 AAAACCAATGCTCAAGAAGTGAGTAAATCCGGGTGGAAAATGAAGCCTTTTTTAGCTCTC 120 Query 351 ATGTGTACAGCTCTTTTGATCTTTTGGTATAAGACCACAAATATTCAGTTTGAACAAACA 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATGTGTACAGCTCTTTTGATCTTTTGGTATAAGACCACAAATATTCAGTTTGAACAAACA 180 Query 411 GAGATAGAAGAAACAGATTATCCTTTTGACATGGCTAAGGAATCTGAAGCAGTTAACGAT 470 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 181 GAGATAGAAGAAACAGATTATCCTTTTGACATGGCAAAGGAATCTGAAGCAGTTAACGAT 240 Query 471 AAATTAAAAGGCTTGCCTCGTGGAATCATACAGTCTAGATCAGATCTTGAATTAAAGCCT 530 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| Sbjct 241 AAATTAAAAGGCTTGCCTCATGGAATCATACAGCCTAGATCAGATCTTGAATTAAAACCT 300 Query 531 CTCTGGTCTAGAGGTAGTCTGAGGTCAAAGGGTGTGGAAATGACTAACCGTAACTTGTTG 590 |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 301 CTCTGGTCTAGAAGTAGTCTGAGGTCAAAGGGTGTTGAAATGACTAACCGTAACTTGTTG 360 Query 591 GCAATACCCGTAGGACTTAAGCAAAAGGGTAACGTCGACGCTCTTGTAAAGAAGTTTCTT 650 ||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||| Sbjct 361 GCAATACCCGTAGGAATTAAGCAAAAGGTTAATGTCGATGCTCTTGTAAAGAAGTTTCTT 420 Query 651 CCCGCGAATTTCACGATTGTTCTTTTCCATTATGATGGAAATATGGATAAATGGTGGGAT 710 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 421 CCCGCGAATTTCACGATTGTTCTTTTCCATTACGATGGAAATATGGATAAATGGTGGGAT 480 Query 711 CTGGAGTGGAGTTCAAAATCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTT 770 || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CTAGAGTGGAGTTCAAAGGCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTT 540 Query 771 GCAAAACGATTCCTCCATCCGGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGAC 830 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCAAAACGATTCCTCCATCCAGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGAC 600 Query 831 GAGGATCTTGGAGTAGAGAATTTCAATCCAGAGAGATATTTGAAGATAGTTAAATCAGTG 890 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 601 GAGGATCTTGGAGTAGAGAATTTCAATCCAGAGAGATATTTGAGGATAGTTAAATCAGTG 660 Query 891 GGACTGGAGATATCTCAACCGGCTTTGGACCACAACTCGACTGAAATACACCATAAAATC 950 ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||| Sbjct 661 GGACTGGAGATATCTCAACCGGCTTTGGATCATAACTCAACTGAAATCCACCATAAAATC 720 Query 951 ACTCTCCGTTCTAAAACAAAGAAATTTCATAGGAGAGTTTACATCAATAGAGGCCATAAA 1010 || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 ACACTCCGTTCTAGGACAAAGAAATTTCATAGGAGAGTTTACATCAATAGAGGCCATAAA 780 Query 1011 AGATGTTCTAATACTAGCT-CAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCC 1069 || |||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 781 AGGTGTTCTAATACTAG-TGCAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCC 839 Query 1070 GGTGTTTTCGAAAGCTGCTTGGCTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCA 1129 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 840 GGTGTTTTCGAAAGCTGCTTGGTTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCA 899 Query 1130 TGGATGGGGAATGGATATGAAACTTGGGTACTGCGCACAGGGAGACCGAACGAAAAACGT 1189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TGGATGGGGAATGGATATGAAACTTGGGTACTGCGCACAGGGAGACCGAACGAAAAACGT 959 Query 1190 AGGGATTGTGGATAGCGAGTATATCCTTCATCAAGGCATTCAAACTTTAGGTGAAAGTGT 1249 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 960 AGGGATTGTGGATAGTGAGTATATCGTTCATCAAGGCATTCAAACTTTAGGTGAAAGTGT 1019 Query 1250 TCCTGAGAAGAAGAAGACGGCTCGTGATGTT-GGGACCAGGAGACA-AGGCCATACAACT 1307 |||||| ||||||| || || ||||||||| ||| |||||||||| || ||||||||| Sbjct 1020 TCCTGAAAAGAAGACCACTGCGCGTGATGTTAGGG-CCAGGAGACACAG-CCATACAACC 1077 Query 1308 TTTGATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAA 1367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 TTTGATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAA 1137 Query 1368 CGATGGAGCAAAGCGGTAGAAGAAGACATTAAGTGGATCGATCCATCGTCATCAAGCTCG 1427 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 1138 CGATGGAGCAAAGCGGTAGAAGAAGACAATAACTGGATCGATCCATCGTCATCAAGCTCG 1197 Query 1428 ATGACAAAGAGGA--A-GAGTAACGGTAATAACAGAAGATTAAGGCGTGGTAGTAGTAGT 1484 ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| Sbjct 1198 ATGACAAAGAGGAGGACGAGTAACGGTAATAACAGAAGATTAAGGCGTGGTACTAGT--- 1254 Query 1485 AGTCACCGAGTAAAGCATAAGAGAAGTCAAGAGACATCAAGAACAACAACAACACA 1540 |||||||||||||||||||||| ||| |||||||||| |||||||| |||||| Sbjct 1255 ---CACCGAGTAAAGCATAAGAGAACTCAGGAGACATCAACAACAACAA-AACACA 1306 > Ahg475199 jgi|Araly1|475199|fgenesh2_kg.2__329__AT1G61240.4 Length=1779 Score = 1011 bits (547), Expect = 0.0 Identities = 985/1191 (83%), Gaps = 51/1191 (4%) Strand=Plus/Plus Query 257 GTCTATCAAATCATTGAAGTCACTTGTTAAAAGAA-AAACCAATGCTCAAGAAGTGAGTA 315 |||||| ||||||| ||||||||||||||| |||| ||| |||||||||||||| | ||| Sbjct 393 GTCTATTAAATCATGGAAGTCACTTGTTAAGAGAAGAAA-CAATGCTCAAGAAGGGGGTA 451 Query 316 AATCCG-GGTGGAAAATGAAGCCCTTTTTGGCT-CTCATGTGTACAGCT-CTTTTGATCT 372 ||| || |||||||||||| || || ||| | ||||||||||||| | |||||||||| Sbjct 452 AAT-CGTCGTGGAAAATGAAACCGATTGTGG-TGCTCATGTGTACAG-TACTTTTGATCT 508 Query 373 TTTGGTATAAGACCACAAATATTCAGTTTGAACAAACAGAGATAGAAGAAACAGATTATC 432 ||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 509 TTTGGTATAAGACTACAAATATTCAGTATGAACAGACAGAGATAGAAGAAACAGATTATC 568 Query 433 CTTTTGACATGGCTAAGGAATCTGAAGCAGTTAACGATAAA-TTAAAAGGCTTGCCTCGT 491 | ||||| ||||| |||||||||||| | || | || ||| || |||||||||||| | Sbjct 569 CATTTGAGATGGCAAAGGAATCTGAACCGGTCAGTGA-AAAGTTGAAAGGCTTGCCTTTT 627 Query 492 GGAATCATACAGTCTAGATCAGATCTT-GAATTAAAGCCTCTCTGGTCTAG-AGGTAGTC 549 || ||||| || ||||||||||| || || |||||||| || ||||| || | ||||| Sbjct 628 GGTATCATGCAACCTAGATCAGAT-TTGGAGTTAAAGCCACTTTGGTCAAGTA-GTAGTT 685 Query 550 TGAGGTCAAAGGGTGTG-GAAATGACTAACCGTAACTTGTTGGCAATACCCGTAGGACTT 608 ||||||||||| | | | ||| |||| |||||||||||||||||||| || ||||||||| Sbjct 686 TGAGGTCAAAGAGCG-GCGAATTGACCAACCGTAACTTGTTGGCAATGCCGGTAGGACTT 744 Query 609 AAGCAAAAGGGTAACGTCGACGCTCTTGTAAAGAAGTTTCTTCCCGCGAATTTCAC-GAT 667 |||||||||| ||| || || ||| ||||||||||||||||||| || |||||||| | | Sbjct 745 AAGCAAAAGGATAATGTTGATGCTGTTGTAAAGAAGTTTCTTCCTGCAAATTTCACTG-T 803 Query 668 TGTTCT-TTTCCATTATGATGGAAATATGGATAAATGGTGGGATCTGGAGTGGAGTTCAA 726 |||| ||| |||||||||||||| |||||| ||||||||||||| |||||||| |||| Sbjct 804 CATTCTATTT-CATTATGATGGAAACATGGATCAATGGTGGGATCTAGAGTGGAGCTCAA 862 Query 727 AATCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTTGCAAAACGATTCCTCC 786 || ||||||| || |||||||| |||||||| ||||||||||| || ||||| || |||| Sbjct 863 AAGCCATACACATTGTTGCACATAACCAGACAAAATGGTGGTTCGCGAAACGTTTTCTCC 922 Query 787 ATCCGGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGACGAGGATCTTGGAGTAG 846 |||| ||| |||| ||||| || |||||| ||||||||||||| || ||||||||||| | Sbjct 923 ATCCTGATATTGTCTCCATCTACGATTATGTTTTTCTTTGGGATGAAGATCTTGGAGTGG 982 Query 847 AGAATTTCAATCCAG-AGAGATATTTGAAGATAGTTAAATCAGTGGGACTGGAGATATCT 905 |||||||||| || | | || || ||| |||||||||| ||| |||||||||||||||| Sbjct 983 AGAATTTCAACCCGGAAAAG-TACCTGAGGATAGTTAAAACAGCGGGACTGGAGATATCT 1041 Query 906 CAACCGGCTTTGGA-CCACAACTCGACTGAAATACACCATAAAATCACTCTCCGTTCTAA 964 |||||||| ||| | ||| ||||| || ||| | ||||||| ||| || | || |||| Sbjct 1042 CAACCGGCCTTGCACCCA-AACTCAACCGAAGTTCACCATAGAATTACAGTTCGGTCTAG 1100 Query 965 AAC-AAAGAAATTTCATAGGAGAGTTTAC-ATCAATAGAGGCCATA-AAAGATGTTCTAA 1021 ||| ||| | |||||||||| |||||||| || | ||||||| ||| ||| ||||| || Sbjct 1101 AACGAAA-ATATTTCATAGGCGAGTTTACGAT-AGTAGAGGCAATATGAAG-TGTTCAAA 1157 Query 1022 TACTAGCT-CAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCCGGTGTTTTCGA 1080 | |||| | || || || ||||||||||||||||||||||||||||| |||||||||| Sbjct 1158 TGCTAG-TGAAGGGCCCCCATGCACCGGATTTGTTGAAGGAATGGCTCCAGTGTTTTCGA 1216 Query 1081 AAGCTGCTTGGCTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCATGGATGGGGAA 1140 | |||| ||| |||||||||||||||| ||||| |||||| |||||||||| ||||||| Sbjct 1217 GATCTGCGTGGTTTTGCACTTGGAATCTAATACAAAATGATCTGGTTCATGGGTGGGGAA 1276 Query 1141 TGGATATGAAACTTGGGTACTGCGCACAGGGAGACCGAA-CGAA-AAACGTAGGGATTGT 1198 |||||||||||||||| ||||| || ||||| ||||| | | || ||| ||||| ||||| Sbjct 1277 TGGATATGAAACTTGGTTACTGTGCTCAGGGTGACCGTAGC-AAGAAA-GTAGGCATTGT 1334 Query 1199 GGATAGCGAGTATATCCTTC-ATCAAGGCATTCAAACTTTAGGTGAAAGTG-TT--CCTG 1254 || || || |||||| ||| ||||||||||||||||| |||||| ||| | || || | Sbjct 1335 CGACAGTGAATATATC-TTCCATCAAGGCATTCAAACTCTAGGTGGAAGCGGTTATCCCG 1393 Query 1255 AGAAGAAGAAGACGGCTCGTGATGTTG-G-GAC-CAGGAGACAAGGC-CATACAACTTTT 1310 | |||||||| | ||||| | || | | || | |||||| || | | | |||||| Sbjct 1394 ATAAGAAGAACTCAGCTCGC-A-GTGGAGTGAATC-GGAGACGCGGTTC-TGCGACTTTT 1449 Query 1311 GATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAACGA 1370 ||||||||||| |||||| |||||||||| || |||||||||||| ||||||||||||| Sbjct 1450 GATTCAAGAACAGAGATACGGAGACAATCAACGTGGGAGCTTCAAGCTTTTAAAGAACGG 1509 Query 1371 TGGAGCAAAGCGGTAGAAGAAGACATTAAGTGGATCGATCC-ATCGTCATC 1420 |||| | |||| || | |||||||| || ||| ||| || ||| ||||| Sbjct 1510 TGGAACCAAGCAGTTGCAGAAGACAAGAATTGGGCCGA-CCGATCTTCATC 1559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66162755565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5