BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11210.1 Length=1213 Score E Sequences producing significant alignments: (Bits) Value Ahg910871 jgi|Araly1|910871|Al_scaffold_0001_1125 1386 0.0 Ahg924903 jgi|Araly1|924903|scaffold_200464.1 87.9 2e-16 > Ahg910871 jgi|Araly1|910871|Al_scaffold_0001_1125 Length=933 Score = 1386 bits (750), Expect = 0.0 Identities = 876/936 (94%), Gaps = 12/936 (1%) Strand=Plus/Plus Query 88 ATGGCGTCGTGGATGAAAGCGGTGCTAATCTCTACTGGCGTCGTAGCCACGGCTATGCAT 147 |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1 ATGGCGTCATGGATGAAGGCGGTGCTAATCTCTACTGGTTTCGTAGCCACGGCTATGCAT 60 Query 148 CTAAAGGTTATTGTTCCTGTGGCTATGGATTTCTCACAAAATCCGATTATTTTGAGCTCT 207 |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| Sbjct 61 CTAAAGGTTATTGTTCCTGTGGCTTTAGATTTCTCACTCGATCCGATTATTTTGAGCTCT 120 Query 208 TTCCTCACGTGGCTGAAACCGCCGTATCTTTACGTCATCACTAACGTCATCATCATCGTT 267 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 121 TTCCTCACGTGGCTGAAACCGCCGTATCTTTACGTCATCACCAACGTCATCATCATCGTT 180 Query 268 GTCGGAGTTTCCTACCGGATTACTACTGTCTCCAGCCACGTCGACGGCAAAGACTATGAG 327 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 ATCGGAGTTTCTTACCGGATTACTACTGTCTCCAGCCACGTCGACGGCAAAGACTACGAG 240 Query 328 GCTTCTTACAGTGGCGACAATAAGTTTCAGACTGATCATCAGCAGATCGTCCAA-GAAGC 386 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | | | Sbjct 241 GCTTCTTACAGTGGCGACAATAAGTTTCAGACTGATCATCAGCAGATCGTCGAACG-ACC 299 Query 387 TCCTCTAAGGCGA-CGAACGGAGACGAAAGATGCGGATTTTGGTTTCATCGGCAAAGTTT 445 | |||| | | | || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TACTCTCCGAC-AGCGGACGGAGACGAAAGATGCGGATTTTGGTTTCATCGGCAAAGTTT 358 Query 446 TGCAGATCGTTAAGGAGCCGGAGGTTGTGTATGAAGAGAAGGAGAGGCCGGCGACGGTAG 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 TGCAGATCGTTAAGGAGCCGGAGGTTGTGTATGAAGAGAAGGAGAGGCCGGCGACGGTAG 418 Query 506 AGGAGGAGG---AGAAGAAGTGTATAATTGTGGTGAGCAAATCGGAAAATCAACCTCCGG 562 ||| ||||| ||||||||||| || | ||||||||||||||||||||||||||||||| Sbjct 419 AGGGGGAGGTGGAGAAGAAGTGTTTAGTGGTGGTGAGCAAATCGGAAAATCAACCTCCGG 478 Query 563 TGGAGAAGCCTCTTGTTACGGCTAGGATCGGCCAAAAGAAACCGGTGGTTAAGACTACAC 622 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 479 TGGAGAAGCCTCTAGTTACGGCTAGAATCGGCCAAAAGAAACCGGTGGTTAAGACTACTC 538 Query 623 CAGCAGAAAGGAATTCTATGAGAGCGTTGAGAGTTGCGAAACCGAAACGTAACGAGACGT 682 |||||||||||||||| ||||||||||| ||||| ||||| ||||| || |||||||| | Sbjct 539 CAGCAGAAAGGAATTCCATGAGAGCGTTAAGAGTGGCGAAGCCGAAGCGGAACGAGACAT 598 Query 683 TAGAGAATACGTGGAAGATGATTATGGAAGGCAACAAGTCAACGCTTCCGTTGACCAGTT 742 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TAGAGAATACGTGGAAGATGATTATGGAAGGCAACAAGTCAACGCTTCCGTTGACCAGTT 658 Query 743 ATTACAAGAGACCCGACACGTTCGGACTTGG---CGAAGAGACAAAACAATCAGGTGTTT 799 ||||||||||||| ||||||||||||||||| |||||||||||||| ||| |||| || Sbjct 659 ATTACAAGAGACCTGACACGTTCGGACTTGGTGGCGAAGAGACAAAACTATCTGGTGGTT 718 Query 800 TGAAGAAATCGGAGACGTTTAGTGACAGAACTAACT-GTTACCAGTCTCTGCCGCCGCCA 858 |||||||||||||| ||||||||||||||||||| | || |||||||||||||| ||||| Sbjct 719 TGAAGAAATCGGAGTCGTTTAGTGACAGAACTAA-TAGTGACCAGTCTCTGCCGTCGCCA 777 Query 859 CCTCCGCCGCTAGTGAAGGTGAAGAAGGTGAAAGTGTCACGGAGTAGGGATGAGCTTAAC 918 || ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 778 CCGCCGCCGCTAGTGAAGGTGAAGAAGGTGAAAGTGACTCGGAGTAGGGATGAGCTTAAC 837 Query 919 CGGAAAGTAGAAGCGTTTATaaaaaaaTGCAACGACGAGAGGTTCGCGTCGATGAAACTG 978 |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 838 CGGAGAGTAGAAGCGTTTATAAAAAAATGCAACGACGAGAGGTTCGCGTCTATGAGACTG 897 Query 979 GACAACGAAGTGGCTCGTCATGGTCTTTCTTATTAA 1014 ||||||||||||||||||||||||||||| |||||| Sbjct 898 GACAACGAAGTGGCTCGTCATGGTCTTTCGTATTAA 933 > Ahg924903 jgi|Araly1|924903|scaffold_200464.1 Length=1106 Score = 87.9 bits (47), Expect = 2e-16 Identities = 75/87 (86%), Gaps = 7/87 (8%) Strand=Plus/Plus Query 643 AGAGCGTTGAGAGTTG-CGAAACCGAA-ACGTAACGAGACGTTAGAGAATACGTGGAAGA 700 ||||| ||||||| || |||| ||||| | | |||||||| ||||||||||||||||||| Sbjct 711 AGAGCTTTGAGAG-TGACGAAGCCGAAGAAG-AACGAGACATTAGAGAATACGTGGAAGA 768 Query 701 TGATTATGGAAGGCAACAAGTCAACGC 727 ||||||||||||| || |||||||| Sbjct 769 TGATTATGGAAGGGAA---GTCAACGC 792 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45290025396 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5