BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11530.1
Length=611
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471289 jgi|Araly1|471289|fgenesh2_kg.1__1243__AT1G11530.1 852 0.0
> Ahg471289 jgi|Araly1|471289|fgenesh2_kg.1__1243__AT1G11530.1
Length=545
Score = 852 bits (461), Expect = 0.0
Identities = 516/543 (95%), Gaps = 2/543 (0%)
Strand=Plus/Plus
Query 70 AAGCTCCAAGAGATGGCAAGAGTTGTTAAAATCGATTCTGCAGAGTCATGGAA-TTTCTA 128
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 4 AAGCTCCAAGAGATGGCAAGAGTTGTTAAAATCGATTCTGCAGAGTCATGGAACTTT-TA 62
Query 129 TGTGAGTCAAGCCAAGAATCAGAATTGTCCCATTGTGGCTCATTTCACTGCATTATGGTG 188
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 63 TGTGAGTCAAGCCAAGAATCAGAATTGTCCTATTGTGGCTCATTTCACTGCATCATGGTG 122
Query 189 TATTCCTTCTGTGTTTATGAACTCCTTCTTCGAAGAGCTTGCGTTTAACTATAAGGATGC 248
||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 123 TATTCCTTCGGTGTTTATGAACTCGTTCTTCGAAGAGCTTGCGTTTAGCTATAAGGATGC 182
Query 249 TCTGTTTCTAATAGTTGATGTTGATGAAGTTAAGGAAGTGGCAAGTCAACTAGAGGTAAA 308
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TCTATTTCTCATAGTTGATGTTGATGAAGTTAAGGAAGTGGCAAGTCAACTAGAGGTAAA 242
Query 309 GGCGATGCCAACTTTCTTGTTCTTGAAGGATGGTAATGCGATGGACAAACTCGTGGGCGC 368
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 243 GGCGATGCCAACTTTCTTGTTCTTGAAGGATGGTAATGCGATGGACAAAATCGTGGGCGC 302
Query 369 AAACCCTGATGAGATTAAGAAACGGGTCGATGGTTTCGTTCAGTCCTCACGTGTTGTTCA 428
|||||||||||| || |||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 303 AAACCCTGATGAAATCAAGAAAAGGGTCGATGGTTTCGTTCAGTCCTCACGAGTTGTTAA 362
Query 429 TATTGCTTAAGAGAGATTTATAGATACGAGCAGAATACTAAATAAAGTTTGTGTGAAGTG 488
||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||
Sbjct 363 TATTGCTTAAGAGAGATATATAGATAAGAGCAGAGTACTAAATAAAGTTTGTGTGAAGTG 422
Query 489 TAATTAGTTTGTAACTTTGGTATTTGGTTTGTGTGAAATATCAAGTGTAAGTGTAAATTT 548
|||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 423 TAATTAGTTTGTGACTTTGGTATATGGTTTCTGTGAAATTTCAAGTGTAAGTGTAAATTT 482
Query 549 TTATAAAAGCAAGTTCTGTTATAAACAAGAACTGGATTTATTTAATTTTGGTTCTTAACA 608
| |||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 483 TAATAAAAACAAGTTCTGTTCTAAAAAAGAACTGGTTTTATTTAATTTTGGTTCTTAACA 542
Query 609 GGG 611
|||
Sbjct 543 GGG 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22340029362
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5