BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11580.1
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471293 jgi|Araly1|471293|fgenesh2_kg.1__1247__AT1G11580.1 2641 0.0
> Ahg471293 jgi|Araly1|471293|fgenesh2_kg.1__1247__AT1G11580.1
Length=1813
Score = 2641 bits (1430), Expect = 0.0
Identities = 1615/1705 (95%), Gaps = 9/1705 (1%)
Strand=Plus/Plus
Query 16 TTTACCTCTAAAGCCAAAGACCAACATGTCTAATTCAAACCAACCACTTCTTTCCAAACC 75
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 TTTACCTCTAAAGCCAAAGACC-A-ATGTCTAATTCAAACCAACCACTTCTTTCCAAACC 58
Query 76 AAAGTCTCTTAAGCACAAGAATCTATGCCTTGTCCTCTCCTTCGTAGCCATTCTTGGCTC 135
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 59 AAAGTCTTTTAAGCACAAGAATCTATGCCTTGTCCTCTCCTTTGTAGCCATTCTTGGCTC 118
Query 136 TG-TGGCTTTCTTCACAGCCCAATTAATCTCCGTTAACACCAACAATAATGATGATTCCT 194
|| | ||| ||| |||| ||||| |||| ||| ||||||||| | |||||||||||||
Sbjct 119 TGCT-GCTATCTACACATCCCAACTAATATCCATTAACACCAGC---AATGATGATTCCT 174
Query 195 TATTAACTACGAGCCAGATTTGCCATGGAGCTCACGACCAAGACTCATGCCAAGCTCTCT 254
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TATTAACCCCGAGCCAGATTTGCCATGGAGCTCACGACCAAGACTCATGCCAAGCTCTCT 234
Query 255 TGTCCGAATTCACGACGTTGTCGCTCTCAAAGCTCAACCGCCTTGACCTATTGCACGTGT 314
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 235 TGTCCGAATTCACGACGTTGTCGCTCTCAAAGCTCAACCGCCTCGACCTATTGCACGTGT 294
Query 315 TTTTGAAGAACTCGGTGTGGCGGCTTGAGAGCACGATGACCATGGTGAGCGAGGCTAGGA 374
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCTTGAAGAACTCGGTGTGGCGGCTTGAGAGCACGATGACCATGGTGAGCGAGGCTAGGA 354
Query 375 TCCGCTCGAACGGTGTTAGAGACAAGGCAGGTTTTGCTGACTGCGAGGAGATGATGGACG 434
||||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 355 TCCGCTCCAACGGTGTGAGAGACAAGGCAGGTCTTACTGACTGCGAGGAGATGATGGACG 414
Query 435 TATCAAAGGATCGGATGATGAGTTCGATGGAGGAACTTCGCGGAGGAAACTATAATCTTG 494
||||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||
Sbjct 415 TATCAAAGGATCGGATGGTGAGTTCGATGGAGGAACTCCGGGGAGGAAACTACAATCTTG 474
Query 495 AGTCATACTCAAACGTTCATACTTGGCTGAGCAGTGTGCTTACAAACTACATGACATGTT 554
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 475 AGTCATACTCAAACGTTCACACTTGGCTAAGCAGTGTGCTCACAAACTACATGACATGTT 534
Query 555 TAGAAAGTATTAGTGATGTCTCCGTCAACTCTAAGCAAATAGTCAAGCCACAACTCGAGG 614
||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||||||
Sbjct 535 TAGAAAGTATTAGCGATGTCTCCGTTAACTCTAAGCAAAGAGTCAAGCCACAAATCGAGG 594
Query 615 ACTTGGTTTCTAGGGCAAGAGTGGCTCTAGCCATCTTTGTCTCCGTCTTGCCTGCCAGAG 674
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CCTTAGTTTCTAGGGCTAGAGTGGCTCTAGCCATCTTTGTCTCCGTCTTGCCTGCCAGAG 654
Query 675 ACGATCTCAAAATGATCATTTCCAATCGCTTCCCGTCGTGGCTAACTGCTCTTGACAGAA 734
|||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 655 ACGATCTCAAGATGATCATTTCCGATCGCTTTCCGTCGTGGCTAACTGCTCTTGACAGAA 714
Query 735 AGCTTTTAGAATCTTCTCCCAAGACACTTAAGGTGACCGCGAACGTTGTGGTGGCAAAAG 794
|||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 715 AGCTTTTAGAATCTGCTCCTAAGACACTTAAGGTGACCGCCAACGTTGTGGTGGCAAAAG 774
Query 795 ACGGCACCGGAAAGTTCAAAACAGTGAATGAGGCAGTGGCGGCAGCACCGGAGAACAGCA 854
| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 775 ATGGCACCGGAAAATTCAAAACAGTAAATGAGGCAGTGGCAGCAGCACCGGAGAATAGCA 834
Query 855 ATACAAGATACGTTATATACGTAAAGAAAGGGGTTTACAAAGAAACTATTGACATAGGAA 914
|| | |||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 835 ATTCCAGATACGTTATATATGTGAAGAAAGGGGTTTACAAGGAAACTATTGACATAGGAA 894
Query 915 AGAAAAAGAAGAACTTAATGCTTGTTGGTGATGGCAAAGACGCAACGATCATAACCGGTA 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AGAAAAAGAAGAACTTAATGCTTGTTGGTGATGGCAAAGACGCAACGATCATAACCGGTA 954
Query 975 GTTTGAATGTCATTGATGGATCCACCACCTTCAGATCAGCCACTGTTGCTGCCAATGGAG 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GTTTGAATGTCATTGATGGATCCACCACCTTCAGATCAGCCACTGTTGCTGCCAATGGAG 1014
Query 1035 ACGGGTTTATGGCACAAGACATATGGTTCCAAAACACTGCAGGGCCGGCAAAGCACCAGG 1094
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1015 ACGGGTTTATGGCACAAGACATATGGTTCCAAAACACTGCAGGGCCAGCAAAGCACCAGG 1074
Query 1095 CTGTGGCTCTACGAGTGAGTGCTGATCAAACTGTTATAAATCGTTGTCGCATAGATGCGT 1154
|||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1075 CTGTGGCTCTCCGCGTGAGCGCTGATCAAACTGTTATAAATCGTTGCCGCATAGATGCGT 1134
Query 1155 ATCAAGACACGCTCTACACTCACACGTTGAGACAATTCTACCGCGACAGCTACATCACCG 1214
| ||||||||||||||||||||||| || |||||||||||||||| |||||||| || |
Sbjct 1135 ACCAAGACACGCTCTACACTCACACCCTGCGACAATTCTACCGCGATAGCTACATAACTG 1194
Query 1215 GTACCGTAGATTTCATCTTCGGAAACTCTGCTGTGGTATTCCAGAACTGCGACATCGTGG 1274
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1195 GTACGGTAGATTTCATCTTCGGAAACTCTGCGGTGGTATTCCAGAACTGCGATATCGTGG 1254
Query 1275 CACGAAATCCTGGAGCTGGGCAAAAGAACATGTTAACGGCTCAAGGACGGGAGGATCAGA 1334
| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1255 CCCGAAATCCTGGAGCTGGGCAAAAGAACATGTTGACAGCTCAAGGGCGGGAGGATCAGA 1314
Query 1335 ACCAGAACACCGCCATTTCGATCCAAAAATGTAAGAT-AACGGCTAGTTCGGATCTTGCT 1393
|||||||||| ||||||||||||||||||||||| || ||||||||| || |||||||||
Sbjct 1315 ACCAGAACACAGCCATTTCGATCCAAAAATGTAA-ATTAACGGCTAGCTCAGATCTTGCT 1373
Query 1394 CCTGTAAAAGGATCTGTGAAAACGTTCCTTGGTCGACCGTGGAAGTTGTACTCAAGAACA 1453
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1374 CCTGTAAAAGGATCTGTGAAAACGTTCCTTGGACGGCCGTGGAAGTTGTACTCAAGAACA 1433
Query 1454 GTGATCATGCAGTCTTTCATTGACAACCACATTGACCCGGCTGGTTGGTTCCCATGGGAT 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GTGATCATGCAGTCTTTCATTGACAACCACATTGACCCGGCTGGTTGGTTCCCATGGGAT 1493
Query 1514 GGTGAGTTTGCGCTCTCCACATTGTATTATGGAGAGTATGCAAATACCGGTCCTGGAGCG 1573
|| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1494 GGCGAGTTTGCGCTCTCGACATTGTACTATGGAGAGTATGCCAATACCGGTCCTGGAGCG 1553
Query 1574 GATACGAGTAAGAGAGTGAATTGGAAGGGATTTAAAGTTATTAAAGACTCAAAAGAGGCC 1633
||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1554 GATACTAGTAAGAGAGTGAAGTGGAAGGGATTTAAAGTTATTAAAGACTCAAAGGAGGCC 1613
Query 1634 GAACAATTCACTGTGGCGAAGCTTATTCAAGGAGGATTATGGTTGAAACCCACTGGAGTT 1693
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1614 GAACAATTTACTGTAGCGAAGCTTATTCAAGGAGGATTATGGTTGAAGCCCACTGGAGTT 1673
Query 1694 ACTTTCCAAGAGTGGCTTTGATTTT 1718
|||||||||||||||||||||||||
Sbjct 1674 ACTTTCCAAGAGTGGCTTTGATTTT 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70466953250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5