BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11670.1 Length=1964 Score E Sequences producing significant alignments: (Bits) Value Ahg471306 jgi|Araly1|471306|fgenesh2_kg.1__1260__AT1G11670.1 2532 0.0 Ahg475142 jgi|Araly1|475142|fgenesh2_kg.2__272__AT1G61890.1 1133 0.0 > Ahg471306 jgi|Araly1|471306|fgenesh2_kg.1__1260__AT1G11670.1 Length=1760 Score = 2532 bits (1371), Expect = 0.0 Identities = 1475/1527 (97%), Gaps = 0/1527 (0%) Strand=Plus/Plus Query 89 aaaaaaaTGGGTTCGGAAGCGACCACCGCCGTGAACAACCTTCAGCAACCGTTACTGGAG 148 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| Sbjct 1 AAAAAAATGGGTTCGGAAGCGACCACCGCCGTGGACAACCTGCAGCAACCGTTACTTGAG 60 Query 149 TCAACAAAATCAGAAGCTGACTTCAGGATGGAGAGTGTATTAACGGACACACACTTGTCA 208 ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCATCGAAATCGGAAGCTGACTTCAGGATGGAGAGTGTATTAACGGACACACACTTGTCA 120 Query 209 TATTTTCGGCGGATCTACCTTGCGTCGTTGATCGAGATGAAGTACCTTTTCCACTTGGCG 268 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 121 TATTTCCGGCGGATCTACCTTGCGTCGTTGATAGAGATGAAGTACCTTTTCCACTTGGCA 180 Query 269 GCTCCGGCGATCTTTGTCTACGTCATCAACAATGGCATGTCTATGCTCACTCGTATCTTC 328 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 GCTCCGGCGATCTTTGTCTACGTCATCAACAACGGCATGTCTATGCTCACTCGTATCTTC 240 Query 329 GCTGGTCGTTTGGGAAGTATGCAACTCGCTGCCGCTTCTCTAGGAAACAGCGGTTTCAAT 388 |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct 241 GCTGGTCGTTTGGGAAGTATGCAACTCGCTGCTGCTTCTCTTGGTAACAGCGGTTTCAAT 300 Query 389 ATGTTCACTCTTGGTCTCATGCTTGGAATGGGAAGTGCAGTGGAGACATTATGTGGGCAA 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATGTTCACTCTTGGTCTCATGCTTGGAATGGGAAGTGCAGTGGAGACATTATGTGGGCAA 360 Query 449 GCGCATGGAGCTCATAGATACGACATGCTTGGAGTCTACTTACAAAGATCCACGATTGTT 508 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 361 GCGCATGGAGCTCACAGATACGACATGCTTGGAGTCTATTTACAAAGATCCACGATTGTT 420 Query 509 CTTGTCATAACCGGACTTCCAATGACTTTACTCTTCATCTTCTCAAAACCTCTCCTCATT 568 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTTGTCATCACCGGACTTCCAATGACTTTACTCTTCATCTTCTCAAAACCTCTCCTCATT 480 Query 569 TCCTTAGGCGAGCCAGCTGACGTAGCATCAGTGGCATCAGTATTCGTCTACGGTATGATC 628 ||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||| Sbjct 481 TCCTTAGGCGAGCCAGCTGACGTAGCATCAGTGGCCTCAGTCTTTGTCTACGGAATGATC 540 Query 629 CCAATGATCTTCGCTTACGCCGTCAACTTCCCCATCCAAAAGTTTCTCCAGTCGCAAAGC 688 ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 541 CCAATGATCTTCGCTTATGCCGTCAATTTCCCCATCCAAAAGTTCCTCCAGTCGCAAAGC 600 Query 689 ATCGTCACGCCGAGTGCTTATATCTCAGCCGCAACACTAGTCATCCACTTAATCCTCTCT 748 |||||||| || || ||||| ||||||||||||||||||||| |||| |||||||||||| Sbjct 601 ATCGTCACACCAAGCGCTTACATCTCAGCCGCAACACTAGTCCTCCATTTAATCCTCTCT 660 Query 749 TGGCTCTCTGTCTTTAAGTTTGGTTGGGGCTTACTTGGTCTCTCCGTTGTTCATAGTCTC 808 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 661 TGGCTCTCTGTCTTTAAGTTTGGTTGGGGCTTACTTGGTCTCTCCGTTGTTCACAGTCTC 720 Query 809 TCGTGGTGGATCATTGTCCTCGCTCAGATTATTTACATTAAGATAAGTCCAAGATGTCGC 868 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TCGTGGTGGATCATTGTCCTCGCTCAGATTATTTACATTAAGATAAGTCCAAGATGTCGC 780 Query 869 CGGACTTGGGATGGTTTTAGTTGGAAAGCTTTTGATGGTCTTTGGGACTTTTTCCAGTTA 928 |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 781 CGGACTTGGGATGGTTTTAGCTGGAAAGCTTTTGATGGTCTTTGGGACTTTATCCAGTTA 840 Query 929 TCCGCAGCTTCCGCCGTCATGCTCTGCCTTGAATCTTGGTACTCTCAGATTCTTGTTCTC 988 || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 841 TCGGCAGCTTCCGCCGTCATGCTCTGTCTTGAATCTTGGTATTCTCAGATTCTTGTTCTC 900 Query 989 CTCGCCGGACTTCTTAAAGACCCTGAACTTGCTTTGGATTCTCTAGCAATCTGCATGTCA 1048 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 CTCGCCGGACTTCTTAAAGACCCTGAACTTGCTTTGGATTCTCTAGCAATCTGCATGTCA 960 Query 1049 ATCTCTGCAATGTCGTTCATGGTGTCAGTTGGATTCAACGCAGCTGCCAGTGTGAGAGTT 1108 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 ATATCTGCAATGTCGTTCATGGTGTCAGTTGGATTCAACGCAGCTGCCAGTGTGAGAGTT 1020 Query 1109 AGTAACGAATTAGGTGCTGGAAATCCAAGATCAGCAGCATTTTCAACCGCGGTAACTACA 1168 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1021 AGTAACGAATTAGGTGCTGGAAATCCAAGATCAGCAGCATTTTCAACCGCAGTAACTACA 1080 Query 1169 GGAGTGTCATTTTTACTGTCATTGTTTGAAGCCATCGTGATCCTCTCGTGGCGACATGTC 1228 |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct 1081 GGAGTGTCATTTTTACTGTCATTGTTTGAAGCCATCGTGATCCTTTCGTGGCGTCACGTC 1140 Query 1229 ATCAGTTACATTTTTACGGATAGTCCAGCGGTTGCGGAAGCCGTCGCCGAGCTCTCTCCT 1288 |||||||| ||||||||||| |||||||||||||||||||| ||| |||||||||||||| Sbjct 1141 ATCAGTTATATTTTTACGGACAGTCCAGCGGTTGCGGAAGCTGTCTCCGAGCTCTCTCCT 1200 Query 1289 TTCTTAGCCATTACCATAGTTCTCAATGGAGTTCAACCTGTTTTATCTGGTGTGGCCGTT 1348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 TTCTTAGCCATTACCATAGTTCTCAATGGAGTTCAACCTGTTTTATCTGGTGTGGCCGTT 1260 Query 1349 GGATGTGGATGGCAAGCATATGTAGCTTACGTTAACATTGGATGTTATTACATTGTGGGG 1408 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1261 GGATGTGGATGGCAAGCATATGTAGCGTACGTTAACATTGGATGTTATTACATCGTGGGG 1320 Query 1409 ATTCCGATTGGTTATGTTCTTGGTTTCACCTATGATATGGGAGCTAGGGGAATATGGACA 1468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 ATTCCGATTGGTTATGTTCTTGGTTTCACCTATGATATGGGAGCTAGGGGAATATGGACA 1380 Query 1469 GGGATGATTGGTGGCACACTCATGCAAACTATTATCTTGGTCATTGTCACATTCCGAACC 1528 |||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||| Sbjct 1381 GGGATGATTGGTGGTACACTCATGCAAACTATTATCTTAGTTATTGTCACTTTCCGAACT 1440 Query 1529 GATTGGGATAAAGAGGTGGAGAAGGCTTCGAGACGATTGGACCAGTGGGAGGACACATCT 1588 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1441 GATTGGGATAAAGAGGTGGAGAAGGCTTCGAGACGATTGGACCAGTGGGAAGACACATCT 1500 Query 1589 CCGCTTCTTAAGCAATAAAATAAATAA 1615 ||||||||||||||||||||||||||| Sbjct 1501 CCGCTTCTTAAGCAATAAAATAAATAA 1527 Score = 130 bits (70), Expect = 4e-29 Identities = 86/93 (92%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 1726 TAGTTAGTTATTCAAGAGATATGCGAATCTCTTGATTAATGAA---TTGGAAAATCGATT 1782 |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1575 TAGTTAGTTAATCAAGAGATATGCGAATCTCTTGATTAATGAAAAATTGGAAAATCGATA 1634 Query 1783 GTTTTCTGAGGGGGTTAGAGTGAAGAGAAGGAT 1815 ||||||||||||| ||||| ||||||||||||| Sbjct 1635 GTTTTCTGAGGGGTTTAGATTGAAGAGAAGGAT 1667 Score = 86.1 bits (46), Expect = 9e-16 Identities = 58/63 (92%), Gaps = 4/63 (6%) Strand=Plus/Plus Query 1905 TTGTTGTAATCGTTTC-TTG--TATGAAATAAATCAGATAATGAAAAATGGGTGTTATGG 1961 |||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||| Sbjct 1699 TTGTTGTAATCGTTTCTTTGTATATGAAGT-AATCAGATAATGAAAAATGGGTGTTATGG 1757 Query 1962 TCC 1964 ||| Sbjct 1758 TCC 1760 Score = 56.5 bits (30), Expect = 7e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1685 TTTTGGTTTTCCCCAAAATGATTTTTAAAT 1714 |||||||||||||||||||||||||||||| Sbjct 1546 TTTTGGTTTTCCCCAAAATGATTTTTAAAT 1575 > Ahg475142 jgi|Araly1|475142|fgenesh2_kg.2__272__AT1G61890.1 Length=1706 Score = 1133 bits (613), Expect = 0.0 Identities = 1172/1438 (82%), Gaps = 54/1438 (4%) Strand=Plus/Plus Query 209 TATTTTCGGCGGATCTACCTTGCG-TCGTTGATCGAGATGAAGTACCT-TTTCCACTTGG 266 |||||||| ||||| || || ||| | | |||| |||||||||| || ||| || |||| Sbjct 113 TATTTTCGCCGGATTTATCTAGCGAT-GGTGATTGAGATGAAGTTTCTCTTT-CATTTGG 170 Query 267 CGGCTCCGGCGATCTTTGTCTACGTCATCAACAATGGCATGTCTATGCTCACTCGTATCT 326 ||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||||| Sbjct 171 CGGCTCCGGCGATCTTTGTGTACGTCATCAACAACGGTATGTCGATTCTCACACGTATCT 230 Query 327 TCGCTGGTCGTTTGGGAAGTATGC-AACTCGCTGCCGCTTCTCTAGGAAACAGCGGTTTC 385 |||| |||| | ||||| | | ||||||| |||||||| || |||||||| |||||| Sbjct 231 TCGCCGGTCACGTCGGAAG-CTTCGAACTCGCCGCCGCTTCACTTGGAAACAGTGGTTTC 289 Query 386 AATATGTTCACTCT-TGGTC-TCATGCTTGGAATGGGAAGTGCAGTGGAGACATTATGTG 443 ||||||||||| || ||| | || ||||||||||||||||||||||||| |||||||||| Sbjct 290 AATATGTTCAC-CTATGGACTTC-TGCTTGGAATGGGAAGTGCAGTGGAAACATTATGTG 347 Query 444 GGCAAGCGCATGGAGCTCATAGATACGACATGCTTGGAGTCTACTTACAAAGATCCACGA 503 | ||||| |||||||||||| ||||||| ||||| || || ||| | |||||||| || | Sbjct 348 GTCAAGCACATGGAGCTCATCGATACGAAATGCTCGGTGTTTACCTCCAAAGATCAAC-A 406 Query 504 TT-GTTCTTGTCATAAC-CGGACTTCCAATG--ACTTTACTCTTCATCTTCTCAAAACCT 559 || ||||| || |||| | | | |||||| || || |||||| |||||||||| || Sbjct 407 TTGGTTCTAATCCTAACATGTA-TACCAATGTCAC-TT-CTCTTCCTCTTCTCAAATCCA 463 Query 560 CTCCTCATTTC-CTTAGGCGAGCCAGCTGACGTAGCATCAGTGGCATCAGTATTCGTCTA 618 |||| | ||| ||| || |||||| | || ||| || | || || ||||||||||| Sbjct 464 ATCCTTACTTCACTT-GGAGAGCCAAAACAAGTGGCAACATTAGCTTCCGTATTCGTCTA 522 Query 619 CGGTATGATCCCAATGATCTTCGCTTACGCCGTCAACTTCCCCATCCAAAAGTTTCTCCA 678 ||||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||| Sbjct 523 CGGTATGATCCCAGTGATCTTCGCTTACGCTATCAATTTCCCTATCCAAAAGTTTCTCCA 582 Query 679 GTCGCAAAGCATCGTCACGCCGAGTGCTTATATCTCAGCCGCAACACTAGTCATCCACT- 737 || |||||||| ||||| || || ||||| || || |||||||| || || ||||| | Sbjct 583 ATCACAAAGCATTGTCACTCCAAGCGCTTACATATCCGCCGCAACGCTCGTGATCCA-TC 641 Query 738 TAATCCTCTCTTGGCTCTCTGTCTTTAAGT-TTGGTT-GGGGCTTACTTGGTCTCT-CCG 794 | | || || ||| || |||| | | || |||||| || ||| |||| || | | Sbjct 642 TCGTTCTTTCGTGGATCGCTGTGTAT-CGTCTTGGTTATGGTCTT--TTGG-CTTTATCT 697 Query 795 TTG-TTCATAGTC-TCTCGTGGTGGATCATTGTCCTCGCTCAGATTATTTACATTAAGAT 852 ||| | ||||| | ||||||||||||||||||| | ||||||||| |||| ||||| || Sbjct 698 TTGATACATAG-CTTCTCGTGGTGGATCATTGTTGTGGCTCAGATTGTTTATATTAAAAT 756 Query 853 AAGTCCAAGATGTCGCCGGACTTGGGATGGTTTTAGTTGGAAAGCTTTTGATGGTCTTTG 912 ||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 757 GAGTCCGAGATGTCGTCGGACTTGGGAAGGTTTTAGTTGGAAAGCTTTTGAAGGTCTTTG 816 Query 913 GGACTTTTTCCAG-TTATCCGCAGCTTCCGCCGTCATGCTCTGCCTTGAATCTTGGTACT 971 ||| ||||||| | ||||| || ||||| ||||||||||| ||||||||||||||||||| Sbjct 817 GGATTTTTTCC-GATTATCTGCTGCTTCTGCCGTCATGCTTTGCCTTGAATCTTGGTACT 875 Query 972 CTCAGATTCTTGTTCTCCTCGCCGGACTTCTTAAAGA-CCCTGAACTTGCTTTGGATTCT 1030 |||||||||||||| | ||||| |||||||| || || |||||||||||||||||||||| Sbjct 876 CTCAGATTCTTGTTTTGCTCGCTGGACTTCTCAA-GAACCCTGAACTTGCTTTGGATTCT 934 Query 1031 CTAGCAATCTGCATGTCAATCTCTGCAATGTCGTTCATGGTGTCAGTTGGATTCAACGCA 1090 || || |||||||||||||| |||||||| || |||||||| || ||||||||||| ||| Sbjct 935 CTCGCTATCTGCATGTCAATTTCTGCAATCTCATTCATGGTCTCCGTTGGATTCAATGCA 994 Query 1091 GCTGCCAGTGTGAGAGTTAGTAACGAATTAGGTGCTGGAAATCCAAGATCAGCAGCATTT 1150 ||||| ||||||||||| || || || |||| || ||||| || ||| |||| || || Sbjct 995 GCTGCAAGTGTGAGAGTAAGCAATGAGCTAGGAGCCGGAAACCCGAGAGCAGCCGCGTTC 1054 Query 1151 TCAACCGCGGTAACTACAGGAGTGTCATTTTTACTGTC-ATTGTTTGAAGCCATCGTGAT 1209 || || | || || || ||||| ||||| ||||| || ||| |||||||| |||||| | Sbjct 1055 TCCACGGTAGTGACGACTGGAGTATCATTCTTACTATCGATT-TTTGAAGCTATCGTGGT 1113 Query 1210 CCTCTCGTGGCG-ACATGTCATCAGTTACATTTTTACGGATAGTCCAGCGGTTGCGGAAG 1268 | | || ||||| | |||||||||| || ||||| |||||||| || || || || | Sbjct 1114 CTTATCATGGCGTA-ATGTCATCAGCTATGCGTTTACAGATAGTCCTGCAGTGGCTGAGG 1172 Query 1269 CCGTCGCCGAGCTCTCTCC-TTTCTTAGCCATTACCATAGTTCTCAATGGAGTTCAACCT 1327 |||| || || | ||||| ||| |||||||| || || || ||||||||| |||| || Sbjct 1173 CCGTTGCGGATTTATCTCCCTTT-TTAGCCATCACAATTGTCCTCAATGGAATTCAGCCA 1231 Query 1328 GTTTTATCTGGTGTGGCCGTTGGATGTGGATGGCAAGCATATGTAGCTTACGTTAACATT 1387 ||||| || |||||||| |||||||||||||||||||||| ||| || ||||| |||||| Sbjct 1232 GTTTTGTCCGGTGTGGCTGTTGGATGTGGATGGCAAGCATTTGTTGCGTACGTAAACATT 1291 Query 1388 GGATGTTATTACATTGTGGGGATTCCGATTGG--TTATGTTCTTGGTTTCACCTATGATA 1445 |||||||| ||| |||||||||| || | ||| || |||||||| ||||| ||||||| Sbjct 1292 GGATGTTACTACGTTGTGGGGATACC-AGTGGGATTC-GTTCTTGGCTTCACTTATGATA 1349 Query 1446 TGGGAGCTAGGGGAATATGGACAGGGATGATTGGTGGCACACTCATGCAAACTATTATCT 1505 ||||||||| ||||||||||||||||||||||||||| ||| | || || || || |||| Sbjct 1350 TGGGAGCTAAGGGAATATGGACAGGGATGATTGGTGGTACATTAATACAGACAATAATCT 1409 Query 1506 TGGTCATTGTCACATTCCGAACCGATTGGGATAAAGAGGTGGAGAAGGCTTCGAG-ACGA 1564 | || |||||||| || ||||| |||||||| |||||||| || || |||||||| | || Sbjct 1410 TAGTGATTGTCACTTTACGAACTGATTGGGACAAAGAGGTTGAAAAAGCTTCGAGCA-GA 1468 Query 1565 TTGGACCAGTGGGAGGACA-CA-TCT-CCGCTTCTT-AAGCAATAAAATAAATAAATT 1618 |||||||||||||| || | | | |||||| || |||||||||| ||||| |||| Sbjct 1469 TTGGACCAGTGGGAAGAGAGCCGTGAGCCGCTT-TTGAAGCAATAAA-TAAATTAATT 1524 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73818894810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5