BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11750.2 Length=1338 Score E Sequences producing significant alignments: (Bits) Value Ahg471314 jgi|Araly1|471314|fgenesh2_kg.1__1268__AT1G11750.1 1447 0.0 > Ahg471314 jgi|Araly1|471314|fgenesh2_kg.1__1268__AT1G11750.1 Length=1209 Score = 1447 bits (783), Expect = 0.0 Identities = 879/925 (95%), Gaps = 8/925 (1%) Strand=Plus/Plus Query 393 ATTTGGAGTGATAGAGGCGAAAAAGGGAAACCCCCCAGTAATGCCTTCAGTGATGACCCC 452 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 288 ATTTGGAGTGATAGAGGCGAAAAAAGGAAACCCGCCAGTAATGCCTTCAGTGATGACCCC 347 Query 453 TGGAGGACCTTTAGACCTCTCTTCTGTGTTATTCCGTAACCGCATAATCTTCATCGGGCA 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 348 TGGAGGACCTTTAGACCTCTCTTCTGTGTTATTCCGTAACCGCATAATCTTCATCGGGCA 407 Query 513 ACCAATTAACGCACAGGTTGCTCAGCGAGTCATATCTCAGCTTGTAACCCTTGCATCTAT 572 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 ACCAATTAACGCTCAAGTTGCTCAGCGAGTCATATCTCAGCTTGTAACCCTTGCATCTAT 467 Query 573 TGATGATAAATCCGACATCCTGATGTACTTGAATTGTCCCGGTGGCAGTACTTACTCCGT 632 |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || Sbjct 468 TGATGATAAATCCGACATCCTGATGTACTTGAATTGTCCCGGTGGCAGCACCTACTCTGT 527 Query 633 CCTAGCAATTTATGACTGTATGTCTTGGATAAAGCCTAAAGTTGGAACAGTGGCGTTTGG 692 | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 528 CTTAGCAATTTATGACTGTATGTCTTGGATAAAGCCTAAAGTTGGAACAGTGGCATTTGG 587 Query 693 AGTAGCTGCAAGCCAAGGAGCACTTCTTCTTGCTGGAGGTGAAAAAGGAATGCGCTATGC 752 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 588 AGTAGCTGCAAGCCAAGGAGCTCTTCTTCTTGCTGGAGGTGAAAAAGGAATGCGCTATGC 647 Query 753 AATGCCAAATACTCGTGTCATGATACATCAACCACAAACTGGATGCGGAGGACATGTAGA 812 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 648 AATGCCTAATACTCGTGTCATGATACATCAACCACAAACTGGATGCGGAGGACATGTGGA 707 Query 813 GGACGTGAGGAGACAGGTCAATGAAGCCATCGAAGCCCGACAAAAAATTGACAGGATGTA 872 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 708 GGACGTGAGGAGACAGGTGAATGAAGCCATCGAAGCCCGACAAAAAATTGACAGGATGTA 767 Query 873 TGCAGCTTTCACTGGACAACCTCTGGAGAAAGTGCAGCAATACACTGAAAGAGATCGTTT 932 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 768 TGCTGCTTTCACTGGACAACCTCTCGAGAAAGTGCAGCAATACACTGAAAGAGATCGTTT 827 Query 933 CTTATCAGCATCTGAGGCGCTTGAGTTCGGGCTCATTGATGGTCTATTGGAAACAGAATA 992 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 828 CTTATCCGCATCTGAGGCGCTTGAGTTCGGGCTCATTGATGGTCTATTGGAAACAGAATA 887 Query 993 CTGAAGCAGCATACAGGACAATGCACA-ACAACAGCTCATTGCAATGTTCAAAGCTTCCA 1051 || || |||| |||||||||||||||| | | |||||||||||||||||||||||||||| Sbjct 888 CTAAAACAGCTTACAGGACAATGCACAGAGA-CAGCTCATTGCAATGTTCAAAGCTTCCA 946 Query 1052 TTTTCATTTGAATATGAACGGTTGTAACTGATATTTGTGCATAAATCAGTTTGGTTTTCT 1111 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 947 ATTTCATTTGAATATGAACAATTGTAACTGATATTTGTGCATAAATCAGTTTGGTTTTCT 1006 Query 1112 TGGTTTTATTGTCTACTAAACAGAA-TGAGAAAACTAAACTGTTTAtttttttACTGAAA 1170 ||| |||| |||||||||||||| |||||||||||||||| || |||||| || |||| Sbjct 1007 TGGCTTTACAATCTACTAAACAGAAATGAGAAAACTAAACTGGTTCTTTTTT-ACCGAAA 1065 Query 1171 AATCTGAAAGTTGT--GTTCTATTTTTGTTTACACACGATAACCAAGCAAACCGGAACTT 1228 |||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1066 AATCTGAAAGTTTTATGTTCTATTTTTGTTTACACACGATAACCAAGCAGACCGGAACTT 1125 Query 1229 TATGGAAAAACCGGATTGGTTAGGTCCAGCTTGTTACT-ACTTAATCCTATACAATGCCA 1287 ||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||| || Sbjct 1126 TATGGAAAA-CCAGATTGGTTAGGTCCAGCTTGTTACTTACTAAATCCTATACAATGGCA 1184 Query 1288 ATGCATATGTTGCTTTGGTACATAG 1312 | || || ||||||||||||||||| Sbjct 1185 AGGCGTAAGTTGCTTTGGTACATAG 1209 Score = 470 bits (254), Expect = 1e-131 Identities = 276/287 (96%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 52 TAACCTTGAGTCTTGCCGTCCTCTGTCATCTATCCACGCCTGAACCCGAAAAACTCTGAA 111 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 TAACCTTCAGCCTTGCCGTCCTCTGTCATCTATCCACGCCTGAACCCGAAAAACTCAGAA 60 Query 112 AGCTGAGCTCTGGTAATGGCGGGTTTAGCAATTTCACCTCCTCTCGGTCTTTCCTTCTCT 171 | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 AATTGAGCTCTGGTAATGGCGGGTTTGGCAATTTCACCTCCTCTCGGTCTTTCCTTCTCT 120 Query 172 TCTCGAACTCGAAACCCTAAACCCACTTCCTTTCTATCTCACAATCAAAGGAATCCTATA 231 |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 121 TCTCGAACTCGAAACCCTAAACCCACTTGGTATCTATCTCACAATCAAAGGAATCCTATA 180 Query 232 AGACGTATAGTTTCTGCTCTACAGAGTCCATATGGAGATTCTCTGAAAGCTGGACTTTCT 291 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 181 AGACGTATAGTTTCTGCTCTACCGAGTCCATATGGAGATTCTCTGAAAGCTGGACTTTCT 240 Query 292 AGTAATGTTTCTGGATCCCCAATAAAGATTGACAACAAGGCTCCAAG 338 |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 AGTAATGTTTCTGGATCCCCAATAAAGATTGACAACAAGGATCCAAG 287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50055390021 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5