BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11750.2
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471314 jgi|Araly1|471314|fgenesh2_kg.1__1268__AT1G11750.1 1447 0.0
> Ahg471314 jgi|Araly1|471314|fgenesh2_kg.1__1268__AT1G11750.1
Length=1209
Score = 1447 bits (783), Expect = 0.0
Identities = 879/925 (95%), Gaps = 8/925 (1%)
Strand=Plus/Plus
Query 393 ATTTGGAGTGATAGAGGCGAAAAAGGGAAACCCCCCAGTAATGCCTTCAGTGATGACCCC 452
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 288 ATTTGGAGTGATAGAGGCGAAAAAAGGAAACCCGCCAGTAATGCCTTCAGTGATGACCCC 347
Query 453 TGGAGGACCTTTAGACCTCTCTTCTGTGTTATTCCGTAACCGCATAATCTTCATCGGGCA 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TGGAGGACCTTTAGACCTCTCTTCTGTGTTATTCCGTAACCGCATAATCTTCATCGGGCA 407
Query 513 ACCAATTAACGCACAGGTTGCTCAGCGAGTCATATCTCAGCTTGTAACCCTTGCATCTAT 572
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ACCAATTAACGCTCAAGTTGCTCAGCGAGTCATATCTCAGCTTGTAACCCTTGCATCTAT 467
Query 573 TGATGATAAATCCGACATCCTGATGTACTTGAATTGTCCCGGTGGCAGTACTTACTCCGT 632
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 468 TGATGATAAATCCGACATCCTGATGTACTTGAATTGTCCCGGTGGCAGCACCTACTCTGT 527
Query 633 CCTAGCAATTTATGACTGTATGTCTTGGATAAAGCCTAAAGTTGGAACAGTGGCGTTTGG 692
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 528 CTTAGCAATTTATGACTGTATGTCTTGGATAAAGCCTAAAGTTGGAACAGTGGCATTTGG 587
Query 693 AGTAGCTGCAAGCCAAGGAGCACTTCTTCTTGCTGGAGGTGAAAAAGGAATGCGCTATGC 752
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 588 AGTAGCTGCAAGCCAAGGAGCTCTTCTTCTTGCTGGAGGTGAAAAAGGAATGCGCTATGC 647
Query 753 AATGCCAAATACTCGTGTCATGATACATCAACCACAAACTGGATGCGGAGGACATGTAGA 812
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 648 AATGCCTAATACTCGTGTCATGATACATCAACCACAAACTGGATGCGGAGGACATGTGGA 707
Query 813 GGACGTGAGGAGACAGGTCAATGAAGCCATCGAAGCCCGACAAAAAATTGACAGGATGTA 872
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GGACGTGAGGAGACAGGTGAATGAAGCCATCGAAGCCCGACAAAAAATTGACAGGATGTA 767
Query 873 TGCAGCTTTCACTGGACAACCTCTGGAGAAAGTGCAGCAATACACTGAAAGAGATCGTTT 932
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 768 TGCTGCTTTCACTGGACAACCTCTCGAGAAAGTGCAGCAATACACTGAAAGAGATCGTTT 827
Query 933 CTTATCAGCATCTGAGGCGCTTGAGTTCGGGCTCATTGATGGTCTATTGGAAACAGAATA 992
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 CTTATCCGCATCTGAGGCGCTTGAGTTCGGGCTCATTGATGGTCTATTGGAAACAGAATA 887
Query 993 CTGAAGCAGCATACAGGACAATGCACA-ACAACAGCTCATTGCAATGTTCAAAGCTTCCA 1051
|| || |||| |||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 888 CTAAAACAGCTTACAGGACAATGCACAGAGA-CAGCTCATTGCAATGTTCAAAGCTTCCA 946
Query 1052 TTTTCATTTGAATATGAACGGTTGTAACTGATATTTGTGCATAAATCAGTTTGGTTTTCT 1111
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 947 ATTTCATTTGAATATGAACAATTGTAACTGATATTTGTGCATAAATCAGTTTGGTTTTCT 1006
Query 1112 TGGTTTTATTGTCTACTAAACAGAA-TGAGAAAACTAAACTGTTTAtttttttACTGAAA 1170
||| |||| |||||||||||||| |||||||||||||||| || |||||| || ||||
Sbjct 1007 TGGCTTTACAATCTACTAAACAGAAATGAGAAAACTAAACTGGTTCTTTTTT-ACCGAAA 1065
Query 1171 AATCTGAAAGTTGT--GTTCTATTTTTGTTTACACACGATAACCAAGCAAACCGGAACTT 1228
|||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1066 AATCTGAAAGTTTTATGTTCTATTTTTGTTTACACACGATAACCAAGCAGACCGGAACTT 1125
Query 1229 TATGGAAAAACCGGATTGGTTAGGTCCAGCTTGTTACT-ACTTAATCCTATACAATGCCA 1287
||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 1126 TATGGAAAA-CCAGATTGGTTAGGTCCAGCTTGTTACTTACTAAATCCTATACAATGGCA 1184
Query 1288 ATGCATATGTTGCTTTGGTACATAG 1312
| || || |||||||||||||||||
Sbjct 1185 AGGCGTAAGTTGCTTTGGTACATAG 1209
Score = 470 bits (254), Expect = 1e-131
Identities = 276/287 (96%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 52 TAACCTTGAGTCTTGCCGTCCTCTGTCATCTATCCACGCCTGAACCCGAAAAACTCTGAA 111
||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TAACCTTCAGCCTTGCCGTCCTCTGTCATCTATCCACGCCTGAACCCGAAAAACTCAGAA 60
Query 112 AGCTGAGCTCTGGTAATGGCGGGTTTAGCAATTTCACCTCCTCTCGGTCTTTCCTTCTCT 171
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 AATTGAGCTCTGGTAATGGCGGGTTTGGCAATTTCACCTCCTCTCGGTCTTTCCTTCTCT 120
Query 172 TCTCGAACTCGAAACCCTAAACCCACTTCCTTTCTATCTCACAATCAAAGGAATCCTATA 231
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 121 TCTCGAACTCGAAACCCTAAACCCACTTGGTATCTATCTCACAATCAAAGGAATCCTATA 180
Query 232 AGACGTATAGTTTCTGCTCTACAGAGTCCATATGGAGATTCTCTGAAAGCTGGACTTTCT 291
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 AGACGTATAGTTTCTGCTCTACCGAGTCCATATGGAGATTCTCTGAAAGCTGGACTTTCT 240
Query 292 AGTAATGTTTCTGGATCCCCAATAAAGATTGACAACAAGGCTCCAAG 338
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 AGTAATGTTTCTGGATCCCCAATAAAGATTGACAACAAGGATCCAAG 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5