BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11840.6 Length=1459 Score E Sequences producing significant alignments: (Bits) Value Ahg920010 jgi|Araly1|920010|scaffold_101291.1 1639 0.0 > Ahg920010 jgi|Araly1|920010|scaffold_101291.1 Length=1088 Score = 1639 bits (887), Expect = 0.0 Identities = 1029/1093 (94%), Gaps = 27/1093 (2%) Strand=Plus/Plus Query 208 TTTCTAGAAACATGGCTGAGGCTTCTGATTTGTTGGAATGGCCTAAGAAGGATAACCGTC 267 ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 11 TTTTTAGAAATATGGCTGAGGCTTCTGACTTGTTGGAATGGCCTAAGAAGGATAACCGTC 70 Query 268 GTTTTCTCCATGTTGTCTACCGCGTTGGTGATCTTGATCGCACCATTGAGTTTTACACTG 327 |||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 71 GTTTTCTCCATGTTGTTTACCGCGTTGGTGATCTTGATCGTACCATTGCGTTTTACACTG 130 Query 328 AGGT-CTTTGGTATGAAGCTGTTGAGGAAAAGAGATATCCCTGAGGAGAAGTATTCTAAT 386 | || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 131 A-GTGCTTTGGTATGAAGCTGTTGAGGAAAAGAGATGTCCCTGAGGAGAAGTATTCTAAT 189 Query 387 GCTTTTCTTGGTTTTGGACCTGAAACATCTAACTTTGTTGTGGAGCTCACATATAACTAT 446 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 190 GCTTTTCTCGGTTTTGGACCTGAAACATCTAACTTCGTTGTGGAGCTCACATATAACTAT 249 Query 447 GGTGTTAGCTCATATGATATTGGAACTGGCTTTGGGCATTTTGCCATTTCAACTCAAGAT 506 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 250 GGTGTTAGCTCATATGATATTGGAACTGGATTTGGGCATTTTGCCATTTCAACTCAAGAT 309 Query 507 GTTTCCAAACTGGTTGAGAACGTCCGTGCCAAGGGTGGAAATGTGACTAGGGAACCTGGT 566 ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| Sbjct 310 GTTTCCAAACTGGTTGAGACCGTCCGTGCCAAGGGTGGAAATGTCAGTAGGGAACCTGGT 369 Query 567 CCAGTCAAAGGTGGAGGCAGTGTCATTGCGTTTGTGAAGGACCCTGATGGCTACACTTTT 626 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 370 CCGGTCAAAGGTGGAGGCAGTGTCATTGCGTTTGTGAAGGACCCTGATGGCTACACTTTT 429 Query 627 GAGCTCATCCAGAGAGGTCCAACTCCTGAACCTTTCTGCCAAGTCATGCTTCGTGTTGGT 686 ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 430 GAGCTCATCCAAAGAGGTCCAACTCCTGAACCATTCTGTCAAGTCATGCTTCGTGTTGGT 489 Query 687 GATCTCGACCGTGCCATCAAATTCTATGAAAAGGCCCTCGGGATGAGACTCTTGAGAAAG 746 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 490 GATCTCGACCGTGCCATCAAATTCTACGAAAAGGCCCTGGGGATGAGACTCTTGAGAAAG 549 Query 747 ATTGAGAGACCTGAGTACAAGTACACCATAGGCATGATGGGGTATGCTGAAGAATACGAG 806 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 550 ATTGAGAGACCTGAGTACAAGTACACCATAGGCATGATGGGATATGCTGAAGAATACGAG 609 Query 807 TCGATAGTTTTGGAGCTGACCTATAACTACGACGTGACTGAGTACACAAAGGGCAATGCA 866 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 610 TCGATAGTTTTGGAGCTGACCTATAACTACGGCGTGACTGAGTACACAAAGGGCAATGCA 669 Query 867 TATGCACAGATTGCAATAGGCACAGATGATGTGTACAAAAGCGGTGAAGTTATTAAGATA 926 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 670 TATGCACAGATTGCAATAGGCACAGATGATGTGTACAAAAGCGGTGAAGTTATTAAGATA 729 Query 927 GTCAACCAAGAGCTAGGAGGAAAGATCACTAGAGAAGCCGGACCTCTTCCTGGACTCGGC 986 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 730 GTCAACCAAGAGCTGGGAGGAAAGATCACTAGAGAACCCGGACCTCTTCCTGGACTCGGC 789 Query 987 ACCAAGATTGTCTCATTCCTTGATCCAGATGGCTGGAAAACGGTTTTGGTGGACAACAAA 1046 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 790 ACCAAGATTGTCGCATTCCTTGATCCAGATGGCTGGAAAACGGTTTTGGTGGACAACAAA 849 Query 1047 GATTTTCTCAAGGAACTGGAATGAGAAGAGCGATGAATGAAGGTCGAGATCACAAAACCA 1106 |||||||| |||||||||||||||| |||||||||| || ||||||||||||||||| Sbjct 850 GATTTTCTGAAGGAACTGGAATGAGGAGAGCGATGA-TGT---TCGAGATCACAAAACCA 905 Query 1107 TAATAATAAAAATGTGATCATAAAATAAAAGGAA-GACTTAGAGTTTGATCTAAAATAAG 1165 ||||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||||| Sbjct 906 TAATAATAAAAATGTGATCATGGAATAAA-GGAAAGACTTAGTGTTTGATCTAAAATAAG 964 Query 1166 AAGATGTGGTTTAGTTTGTGTCGTGCTATGTGTGTGTGCTCGTTTCTTTTGTCTTTGAGC 1225 | ||||||||| |||||||||||||||||||||||| ||||||||||||||| | Sbjct 965 ATGATGTGGTTAAGTTTGTGTCGTGCTATGTGTGTG--CTCGTTTCTTTTGTCC-----C 1017 Query 1226 TTAAAAGTTAAAACTCTAGTCTATATGGACCTGAATAAAAA-TATTTCCACCACCTTGAG 1284 |||| | |||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 1018 TTAA--GCTAAA-CTCTA-T------GGACCTGAATAAAAAATATTTCCACCACCTTGAG 1067 Query 1285 GTTTTGGTGTTTG 1297 || ||| |||| Sbjct 1068 CTTGAGGT-TTTG 1079 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54583321085 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5