BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11860.1
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471331 jgi|Araly1|471331|fgenesh2_kg.1__1285__AT1G11860.2 2464 0.0
> Ahg471331 jgi|Araly1|471331|fgenesh2_kg.1__1285__AT1G11860.2
Length=1521
Score = 2464 bits (1334), Expect = 0.0
Identities = 1466/1529 (96%), Gaps = 12/1529 (1%)
Strand=Plus/Plus
Query 33 CCTAAATATAAATATATAAAGTCCCTTTTGCCATTGATAGCAACAAAATCATCAATTAAT 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCTAAATATAAATATATAAAGTCCCTTTTGCCATTGATAGCAACAAAATCATCAATTAAT 60
Query 93 TTGCAATATAACACACACTTACTACTACATAGTAGTTTGAGGAATCTGGGAAGAAGCTCC 152
|||| | ||||||||||| || ||||||||||||| | |||||||||||||||||||||
Sbjct 61 TTGC-A-ATAACACACACACAC-ACTACATAGTAGTATCAGGAATCTGGGAAGAAGCTCC 117
Query 153 AGTGGCAAAGACTCAACATTTAAGATGAGAGGTGGGAGTCTATGGCAGCTAGGGCAATCA 212
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 118 AGTGGCAAAGACTCAAGATTT---ATGAGAGGTGGGAGTCTATGGCAGCTAGGGCAATCT 174
Query 213 ATAACCCGTCGTCTTGCTCAATCTGACAAGAAGGTTGTGTCACGTCGCTACTTTGCCTCT 272
||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 175 ATAACTCGTCGTCTTGCTCAATCTGACAAGAAGGGTGTGTCACGCCGCTACTTTGCCTCT 234
Query 273 GAAGCTGACCTGAAAAAGACTGCTCTTTACGACTTCCATGTTGCCCATGGAGGAAAGATG 332
||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct 235 GAAGCTGACCTGAAAAAAACCGCCCTTTACGACTTCCATGTCGCCCATGGAGGAAAGATG 294
Query 333 GTTCCTTTTGCTGGTTGGAGTATGCCAATTCAGTACAAAGATTCGATTATGGACTCAACG 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GTTCCTTTTGCTGGTTGGAGTATGCCAATTCAGTACAAAGATTCGATTATGGACTCAACG 354
Query 393 GTTAACTGCAGGGAAAATGGGAGTTTGTTTGATGTTGCACATATGTGTGGTTTGAGCCTT 452
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTTAACTGCAGGCAAAATGGGAGTTTGTTTGATGTTGCACATATGTGTGGTTTGAGCCTT 414
Query 453 AAGGGTAAAGATTGTGTTCCTTTTCTTGAGACACTTGTGGTTGCTGATGTGGCTGGTTTG 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AAGGGTAAAGATTGTGTTCCTTTTCTTGAGACACTTGTGGTTGCTGATGTGGCTGGTTTG 474
Query 513 GCTCCTGGAACTGGGAGCTTAACTGTGTTCACAAACGAGAAAGGAGGTGCCATTGATGAC 572
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 475 GCTCCTGGAACTGGGAGCTTAACTGTGTTTACAAATGAGAAAGGAGGTGCCATTGATGAC 534
Query 573 TCGGTGATTACCAAAGTGACAGATGAACATATCTATTTGGTGGTCAATGCTGGCTGTAGG 632
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 535 TCGGTGATTACCAAAGTGACAGATGAACATATCTATTTGGTGGTCAATGCTGGTTGTAGG 594
Query 633 GATAAGGATTTGGCTCACATTGAAGAACACATGAAGGCTTTCAAATCCAAAGGAGGTGAT 692
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 595 GATAAGGATTTGGCTCACATTGAAGAACACATGAAGGCTTTCAAGTCCAAAGGAGGTGAT 654
Query 693 GTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGGGTCCTTTGGCTGCT 752
||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 655 GTCTCCTGGCATATCCATGATGAGAGATCTCTTCTCGCCCTTCAGGGTCCTTTGGCTGCT 714
Query 753 CCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCAAGCTTTACTTTGG-CAATTTCCA 811
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 715 CCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCAAGCTTTACTTTGGGCAGTT-CCA 773
Query 812 GATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGGTATACCGGGGAAGA 871
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 774 GATTCTGGACATAAATGGTTCCACATGTTTTCTTACCAGGACCGGGTATACCGGGGAAGA 833
Query 872 TGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGTGGATCTAGCAAAAGCAATCTTGGA 931
|||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 834 TGGGTTTGAGATCTCAGTTCCAGATGAGCACGCAGTGGATCTAGCAAAAGCAATCTTGGA 893
Query 932 GAAGTCCGAGGGTAAGGTAAGGCTTACGGGTCTAGGAGCAAGAGACAGTCTCAGGTTAGA 991
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 894 GAAATCCGAGGGTAAGGTAAGGCTTACAGGTCTAGGTGCAAGAGACAGTCTCAGGTTAGA 953
Query 992 AGCAGGACTTTGTCTATATGGAAACGACATGGAGCAACACATTTCTCCTGTTGAAGCTGG 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AGCAGGACTTTGTCTATATGGAAACGACATGGAGCAACACATTTCTCCTGTTGAAGCTGG 1013
Query 1052 GCTCACATGGGCCATAGGGAAGCGTAGAAGAGCCGAAGGTGGATTTCTTGGCGCGGATGT 1111
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1014 GCTCACATGGGCCATAGGGAAGCGTAGAAGAGCCGAAGGTGGGTTTCTTGGCGCGGATGT 1073
Query 1112 GATTCTCCAGCAGCTTAAAGATGGACCTACAATCAGAAGGGTCGGTTTCTTCTCCTCAGG 1171
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1074 GATTCTCCAACAGCTTAAAGATGGACCTACAATCAGAAGGGTCGGTTTTTTCTCCTCAGG 1133
Query 1172 ACCACCCGCAAGGTCGCATAGCGAGGTTCATGATGAGAGTGGGAACAAGATTGGAGAGAT 1231
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1134 ACCACCCGCAAGGTCGCACAGTGAGGTTCATGATGAGAGTGGGAACAAGATTGGAGAGAT 1193
Query 1232 CACAAGTGGAGGGTTTAGCCCGAACCTGAAGAAGAACATAGCCATGGGATATGTGAAGTC 1291
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1194 CACAAGTGGAGGGTTTAGCCCGAACCTGAAGAAGAACATAGCCATGGGGTATGTGAAGTC 1253
Query 1292 AGGTCAGCACAAGACTGGGACTAAAGTCAAGATCTTGGTCCGTGGGAAACCATATGAAGG 1351
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 AGGTCAGCACAAGACAGGGACTAAAGTCAAGATCTTGGTCCGTGGGAAACCGTATGAAGG 1313
Query 1352 CAGCATCACGAAGATGCCATTCGTGGCCACCAAATACTACAAACCAACATGAAATGTGTG 1411
|||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1314 CAGCATCACGAAGATGCCGTTCGTGGCCACCAAATACTACAAGCCAACATGATATGTGTG 1373
Query 1412 TCTCCTTCGTCCATG-ACTTTGTCTCTTGCTTCTGTTAAA-TGACTTGTGTTTTTCTTCT 1469
||| |||||||||| ||| |||||||| || ||||||| |||||||||||||||||||
Sbjct 1374 TCTTCTTCGTCCATTTACTC-GTCTCTTGTTTTTGTTAAAATGACTTGTGTTTTTCTTCT 1432
Query 1470 GTTCTGTTTTGGCCTGAAAAATGTACGATATTTTGCCAAGAGGGCATTGCTTATTT-CAT 1528
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1433 GTTCTGATTTGGCCTGAAAAATGTACGATATTTTGCCAAGAGGGCATTGCTTATTTTCAT 1492
Query 1529 TTTTATTGAAATAAATTTAACACATGTAA 1557
|| ||||||||||||||||||||||||||
Sbjct 1493 TTATATTGAAATAAATTTAACACATGTAA 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59954045630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5