BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12090.1 Length=879 Score E Sequences producing significant alignments: (Bits) Value Ahg471359 jgi|Araly1|471359|fgenesh2_kg.1__1313__AT1G12090.1 924 0.0 > Ahg471359 jgi|Araly1|471359|fgenesh2_kg.1__1313__AT1G12090.1 Length=813 Score = 924 bits (500), Expect = 0.0 Identities = 639/701 (91%), Gaps = 29/701 (4%) Strand=Plus/Plus Query 19 ACGCTCTTGGGCTTTTCTTGAAACCACTATAAAACCTATCTCAATT-CTTTCATTTTCTC 77 ||||||||| | |||||||||||||||||||||||| ||||||||| | |||| || ||| Sbjct 1 ACGCTCTTGCGTTTTTCTTGAAACCACTATAAAACCCATCTCAATTCCCTTCACTTGCTC 60 Query 78 CACACCCAATTCACTCACAACCTAGCTAGCTAGTAAACAGTATTTTCTATATACCAAAAA 137 ||||||||||||||||| || | | |||| | || | | | | | ||| || Sbjct 61 CACACCCAATTCACTCATAA-C--G-TAGC---T----AG-A-TGGC--T-T--CAAGAA 102 Query 138 TGGCTTCAAGTTCCATAGCTCTTTTCTTGGCTCTCAATCTTCTCTTTTTCACAACAATCT 197 | |||| |||||||| |||||||||||||||||||| || |||||||||||||||| Sbjct 103 ---CCACAAGCTCCATAGCCCTTTTCTTGGCTCTCAATCTCCTTTTTTTCACAACAATCT 159 Query 198 CCGCCTGTGGTAGCTGTACTCCGTGCGGCGGAGGTTGCCCCTCTCCCAAGCCAAAGCCAA 257 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 160 CCGCCTGTGGTAGCTGCACTCCGTGCGGTGGAGGTTGCCCCTCTCCCAAGCCAAAGCCAA 219 Query 258 CTCCTAAACCAACCCCAAGCCCTAGCTCTGGCTCGAGCAAGTGCCCTAAAGACACCCTCA 317 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 220 CTCCTAAACCGACCCCAAGCCCTAGCTCTGGCTCGAGCAAGTGCCCTAAAGACACCCTCA 279 Query 318 AGCTCGGTGTCTGCGCTAATGTGCTCAACGGCCTCCTGGACTTGACCCTTGGCAAGCCAC 377 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 280 AGCTCGGTGTCTGCGCTAATGTGCTCAACGGGCTCCTCGACTTGACCCTTGGCAAGCCAC 339 Query 378 CGGTCGAGCCATGCTGCAGCCTCATCCAAGGACTCGCTGATGTTGAGGCAGCCGTTTGTC 437 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 340 CGGTCGAGCCATGCTGCAGCCTCATCCAAGGACTCGCTGATGTTGAAGCAGCCGTTTGTC 399 Query 438 TCTGCACCGCTCTTAAGGCTAACATTCTTGGAATCAACTTGAACCTCCCAATATCTTTAA 497 |||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||| Sbjct 400 TCTGCACCGCCCTTAAGGCTAACATTCTTGGAATCAACTTAAACCTCCCAATCTCTCTAA 459 Query 498 GTCTACTCCTTAATGTTTGCAGCAAACAACTTCCTCCTGGCTTCCAATGCTAAAAACCAT 557 |||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 460 GTCTGCTCCTCAATGTTTGCAGCAAACAACTTCCTCCTGGCTTCCAATGCTAATAACCAT 519 Query 558 ATTGATATATAATTTAAATACACTTATGTGTGTATTAATTTATCTTCTTGTTTTAAAGAG 617 ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| Sbjct 520 ATTGATATATAATTTAAATACACTTATGTGT--AT-A-TTTATCTTCTTGTTTTAAAGAG 575 Query 618 ACAGGGTGATTCTCTATACTCTTAT-ATTGTGTCTTTATATATCTTGATCTGTGGTTTCT 676 ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 576 ACAAGGTGATTCT--ATACTCTTATTATTGTGTCTTTATATATCTTGATCTGTGGTTTCT 633 Query 677 TCTACTCTGCTTGCTCTGGTGTTCATTGGGGTGATCCGTAA 717 |||| ||| |||||||||||||||||||| ||||||||||| Sbjct 634 TCTAGTCTTCTTGCTCTGGTGTTCATTGGAGTGATCCGTAA 674 Score = 135 bits (73), Expect = 4e-31 Identities = 125/147 (85%), Gaps = 15/147 (10%) Strand=Plus/Plus Query 746 TCC-TATTATATATACTCTTACCATTGGGGGTATTGTTGTATTG----G----TTTGTAT 796 ||| || ||||||||||||||||||||||||||||| ||||||| | ||||||| Sbjct 668 TCCGTAATATATATACTCTTACCATTGGGGGTATTGCTGTATTGATTTGTAACTTTGTAT 727 Query 797 TATGATTCTATGAATTAATAAGAATTTAACTTTTATGTTATGGATTCATTAT-TAT---A 852 ||||||||||||||||||||||||||||| ||||||||| |||| ||| ||| ||| | Sbjct 728 TATGATTCTATGAATTAATAAGAATTTAATTTTTATGTTGTGGACTCAATATATATTTTA 787 Query 853 CG-GAATATTGTGTTTTATGGTTTATA 878 | ||||||| |||||||||||||||| Sbjct 788 -GTGAATATTATGTTTTATGGTTTATA 813 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32556971118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5