BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12110.1 Length=2136 Score E Sequences producing significant alignments: (Bits) Value Ahg920044 jgi|Araly1|920044|scaffold_101325.1 3193 0.0 > Ahg920044 jgi|Araly1|920044|scaffold_101325.1 Length=2004 Score = 3193 bits (1729), Expect = 0.0 Identities = 1927/2019 (95%), Gaps = 28/2019 (1%) Strand=Plus/Plus Query 97 TCCATCTTCAAG--ATGTCTCTTCCTGAAACTAAATCTGATGATATCCTTCTTGATGCTT 154 |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 8 TCCATCTTCAAGATATGTCTCTTCCTGAAACTAAATCTGATG---TCCTTCTTGATGCTT 64 Query 155 GGGACTTCCAAGGCCGTCCCGCCGATCGCTCAAAAACCGGCGGCTGGGCCAGCGCCGCCA 214 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 GGGACTTCCAAGGCCGCCCCGCCGATCGCTCAAAAACCGGCGGCTGGGCCAGCGCCGCCA 124 Query 215 TGATTCTTTGTATTGAGGCCGTGGAGAGGCTGACGACGTTAGGTATCGGAGTTAATCTGG 274 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 125 TGATTCTTTGTATTGAGGCGGTGGAGAGGCTGACGACATTAGGTATCGGAGTTAACCTGG 184 Query 275 TGACGTATTTGACGGGAACTATGCATTTAGGCAATGCAACTGCGGCTAACACCGTTACCA 334 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 185 TGACGTATTTGACGGGAACTATGCATTTAGGCAATGCAACGGCGGCTAACACTGTTACCA 244 Query 335 ATTTCCTCGGAACTTCTTTCATGCTCTGTCTCCTCGGTGGCTTCATCGCCGATACCTTTC 394 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 245 ATTTCCTCGGAACCTCTTTCATGCTCTGTCTCCTCGGTGGCTTCATCGCTGATACCTTTC 304 Query 395 TCGGCAGGTACCTAACGATTGCTATATTCGCCGCAATCCAAGCCACGGGTGTTTCAATCT 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 TCGGCAGGTACCTAACGATTGCTATATTCGCCGCAATCCAAGCCACGGGTGTTTCAATCT 364 Query 455 TAACTCTATCAACAATCATACCGGGACTTCGACCACCAAGATGCAATCCAACAACGTCGT 514 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 365 TAACTCTATCAACAATCATACCGGGACTTCGACCACCAAGATGCAACCCAACGACGTCGT 424 Query 515 CTCACTGCGAACAAGCAAGTGGAATACAACTGACGGTCCTATACTTAGCCTTATACCTCA 574 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 425 CTCATTGCGAACAAGCAAGTGGAATACAATTGACGGTCCTATACTTAGCCTTATACCTCA 484 Query 575 CCGCTCTAGGAACGGGAGGCGTGAAGGCTAGTGTCTCGGGTTTCGGGTCGGACCAATTCG 634 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 CCGCCCTAGGAACGGGGGGCGTGAAGGCTAGTGTCTCGGGTTTCGGGTCGGACCAATTCG 544 Query 635 ATGAGACCGAACCAAAAGAACGATCGAAAATGACATATTTCTTCAACCGTTTCTTCTTTT 694 |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 545 ATGAGACCGAGCCTAAAGAACGATCAAAAATGACATATTTCTTCAACCGTTTCTTCTTTT 604 Query 695 GTATCAACGTTGGCTCTCTTTTAGCTGTGACGGTCCTTGTCTACGTACAAGACGATGTTG 754 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 605 GTATCAACGTTGGCTCTCTTTTAGCCGTGACGGTCCTTGTCTACGTACAAGACGATGTTG 664 Query 755 GACGCAAATGGGGCTATGGAATTTGCGCGTTTGCGATCGTGCTTGCACTCAGCGTTTTCT 814 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 665 GACGCAAATGGGGCTATGGAATTTGTGCGTTTGCGATCGTGCTTGCACTCAGCGTTTTCT 724 Query 815 TGGCCGGAACAAACCGCTACCGTTTCAAGAAGTTGATCGGTAGCCCGATGACGCAGGTTG 874 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 725 TGGCCGGCACAAACCGCTACCGTTTCAAGAAGTTGATCGGTAGTCCGATGACGCAGGTTG 784 Query 875 CTGCGGTTATCGTGGCGGCGTGGAGGAATAGGAAGCTCGAGCTGCCGGCAGATCCGTCCT 934 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | Sbjct 785 CTGCGGTTATCGTGGCAGCGTGGAGGAATAGAAAGCTCGAGCTGCCGGCAGATCCGTCGT 844 Query 935 ATCTCTACGATGTGGATGATATTATTGCGGCGGAAGGTTCGATGAAGGGTAAACAAAAGC 994 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 ATCTCTACGACGTGGACGATATTATTGCGGCGGAAGGTTCGATGAAGGGTAAACAAAAGC 904 Query 995 TGCCACACACTGAACAATTCCGTTCATTAGATAAGGCAGCAATAAGGGATCAGGAAGCGG 1054 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 905 TGCCACACACCGAACAATTCCGTTCATTGGATAAGGCAGCAATAAGGGATCAGGAAGCGG 964 Query 1055 GAGTTACCTCGAATGTATTCAACAAGTGGACACTCTCAACACTAACAGATGTTGAGGAAG 1114 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 965 GAGTTACCTCGAATATATTCAACAAGTGGACACTCTCAACACTAACAGATGTTGAGGAAG 1024 Query 1115 TGAAACAAATCGTGCGAATGTTACCAATTTGGGCAACATGCATCCTCTTCTGGACCGTCC 1174 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 TGAAACAAATCGTGCGGATGTTACCAATTTGGGCAACATGCATCCTCTTCTGGACCGTCC 1084 Query 1175 ACGCTCAATTAACGACATTATCAGTCGCACAATCCGAGAC-ATTGGACCGTTC-CATCGG 1232 ||||||||||||||||||||||||| |||||||||||||| || ||||||| | |||||| Sbjct 1085 ACGCTCAATTAACGACATTATCAGTAGCACAATCCGAGACTAT-GGACCGT-CACATCGG 1142 Query 1233 GAGCTTCGAGATCCCTCCAGCATCGATGGCAGTCTTCTACGTCGGTGGCCTCCTCCTAAC 1292 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1143 GAGCTTTGAGATCCCTCCAGCATCGATGGCAGTCTTCTACGTCGGTGGCCTCCTCCTAAC 1202 Query 1293 CACCGCCGTCTATGACCGCGTCGCCATTCGTCTATGCAAAAAGCTATTCAACTACCCCCA 1352 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1203 CACCGCCCTCTATGACCGCGTCGCCATTCGCCTATGCAAAAAGCTATTCAACTACCCCCA 1262 Query 1353 TGGTCTAAGACCGCTTCAACGGATCGGTTTGGGGCTTTTCTTCGGATCAATGGCTATGGC 1412 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1263 TGGTCTTAGACCGCTTCAACGGATCGGTTTGGGGCTTTTATTCGGATCAATGGCTATGGC 1322 Query 1413 TGTGGCTGCTTTGGTCGAGCTCAAACGTCTTAGAACTGC-ACACGCTCATGGTCCAACAG 1471 ||||||||||||||| ||||| |||||||||||||| || | | || ||||||||||| | Sbjct 1323 TGTGGCTGCTTTGGTAGAGCTAAAACGTCTTAGAACCGCGA-ATGCCCATGGTCCAACGG 1381 Query 1472 TCAAAACGCTTCCTCTAGGGTTTTATCTACTCATCCCACAATATCTTATTGTCGGTATCG 1531 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1382 TCAAAACACTTCCTCTAGGGTTTTATCTACTCATCCCACAATATCTTATTGTCGGTATCG 1441 Query 1532 GCGAAGCGTTAATCTACACAGGACAGTTAGATTTCTTCTTGAGAGAGTGCCCTAAAGGTA 1591 |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| | Sbjct 1442 GCGAGGCGTTAATCTACACGGGACAGTTGGATTTCTTCTTGAGAGAGTGCCCTAAAGGCA 1501 Query 1592 TGAAAGGGATGAGCACGGGTCTATTGTTGAGCACATTGGCATTAGGCTTTTTCTTCAGCT 1651 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1502 TGAAAGGGATGAGCACGGGTCTATTGTTGAGCACATTGGCATTAGGGTTTTTCTTCAGCT 1561 Query 1652 CGGTTCTCGTGACAATCGTCGAGAAATTCACCGGGAAAGCTCATCCATGGATTGCCGATG 1711 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1562 CAGTTCTCGTGACCATCGTCGAGAAATTCACCGGGAAAGCTCATCCATGGATTGCCGATG 1621 Query 1712 ATCTCAACAAGGGCCGTCTTTACAATTTCTACTGGCTTGTGGCCGTACTTGTTGCCTTGA 1771 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1622 ATCTCAACAAGGGACGTCTTTACAATTTCTACTGGCTTGTGGCCGTACTTGTCGCCTTGA 1681 Query 1772 ACTTCCTCATTTTCCTAGTTTTCTCCAAGTGGTACGTTTACAAGGAAAAAAGACTAGCTG 1831 |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1682 ACTTCCTCATTTTCCTCGTTTTCTCCAAGTGGTACGTTTACAAAGAAAAGAGACTAGCTG 1741 Query 1832 AGGTGGGGATTGAGTTGGATGATGAGCCGAGTATTCCAATGGGtcattgatcatgaattc 1891 | || ||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1742 ATGTCGGGATTGAGTTGGATGATGAGCCGAGTATTCCAATGGGTCATTGATCATGA-T-C 1799 Query 1892 atgatcatgatcatgatgatgaacattatgcatgtctatgttgatatgtttgaatttgat 1951 ||||| ||| || | | | | ||||||||||||||||||||||||| |||||| Sbjct 1800 ATGAT---GAT---GA--AC-A-C-TG-TGCATGTCTATGTTGATATGTTTGA-TTTGAT 1846 Query 1952 tttgagttttgtttgtatattttatgatgctttt-CTTAATTACCTCTTGTTTCCGAGTC 2010 |||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||| Sbjct 1847 TTTGAGTTTTGTG-GTATATTTAATGATGATTTTTCTTAATTACCTCTTGTTTCCGAGTC 1905 Query 2011 GACAAATAATGGACCGACCGATAAGGGATAAAAGTTAAAGTTTTCCCATCAGGTTCTGTA 2070 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1906 GACAAATAATGGACCGACCGATAAGGGATAAAAGTTAAAGTTTTCCCATCAGGTTCTGTA 1965 Query 2071 TAAAAGCAGAAATTGTAACATTTCTTAAGATTTGACGCA 2109 |||||||||||||||||| ||||| |||||||||||||| Sbjct 1966 TAAAAGCAGAAATTGTAAAATTTCCTAAGATTTGACGCA 2004 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80370416950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5