BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12200.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920054 jgi|Araly1|920054|scaffold_101335.1 2320 0.0
> Ahg920054 jgi|Araly1|920054|scaffold_101335.1
Length=1438
Score = 2320 bits (1256), Expect = 0.0
Identities = 1378/1438 (96%), Gaps = 4/1438 (0%)
Strand=Plus/Plus
Query 75 AAACTTCACTATAACCTAACATGGCAAC-GAGTCATCCTGATCCAACCACCTCTCGCCAC 133
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1 AAACTTCACTATAACCTAACATGGC-ACAGAGTCATCCTGATCCAACCACCTCTCGCCAC 59
Query 134 GTGGCAGTAATCGGAGCCGGAGCCGCTGGACTCGTAGCTGCTCGTGAGCTACGTCGTGAA 193
||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 60 GTGGCAGTAATCGGAGCCGGAGCCGCTGGGTTAGTGGCTGCTCGTGAGCTACGTCGTGAA 119
Query 194 GGCCACTCAGTAGTCGTCTTAGAGCGCGGGAGCCAAATCGGAGGCGTGTGGGCTTACACC 253
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGCCACTCAGTTGTCGTCTTAGAGCGCGGGAGCCAAATCGGAGGCGTGTGGGCTTACACC 179
Query 254 TCTCAAGTCGAACCAGACCCGCTTAGCCTCGACCCGACCCGACCCGTCGTCCACTCAAGC 313
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 TCTGAAGTCGAACCTGACCCGCTTAGCCTCGACCCGACCCGACCCGTCGTCCACTCGAGC 239
Query 314 CTCTACAGATCCCTACGTACCAACATCCCTC-GAGAATGCATGGGCTTCACCGACTTCCC 372
|||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 240 CTCTACAGATCCTTACGTACCAACATCCC-CAGAGAATGCATGGGTTTCACCGACTTCCC 298
Query 373 TTTTGCGACCCGACCACACGACGGGTCAAGGGATCCGAGAAGACATCCGGCTCATACTGA 432
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 299 TTTTGCGACCCGACCACACGACGGGTCGAGGGATCCGAGAAGACATCCAGCTCATACTGA 358
Query 433 GGTTCTTGCTTACCTGCGAGACTTTGCTAAAGAATTCGATATCGAGGAAATGGTTAGGTT 492
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 359 GGTTCTTGCTTACCTGCGAGACTTTGCTAAAGAATTCGATATCGAGGAGATGGTAAGGTT 418
Query 493 CGAGACGGAGGTTGTTAAGGCGGAGCAGGTGGCGGCAGAGGGGGAGGAGAGAGGGAAGTG 552
|| |||||||||||||||||| |||||| ||||||| || ||||||||||||||| ||||
Sbjct 419 CGGGACGGAGGTTGTTAAGGCCGAGCAGATGGCGGCGGAAGGGGAGGAGAGAGGGGAGTG 478
Query 553 GAGGGTTGAATCGAGAAGCTCCGATGGTGTTGTCGACGAGATATACGACGCCGTTGTGGT 612
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 479 GAGGGTTGAATCGAGAAGCTCCGATGGTGTTGCCAACGAGATATACGACGCCGTTGTGGT 538
Query 613 TTGTAACGGACACTATACCGAGCCTCGTCATGCTCTTATCACTGGCATAGATTCATGGCC 672
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTGTAACGGACACTATACAGAGCCTCGTCATGCTCTTATCACTGGCATAGATTCATGGCC 598
Query 673 AGGCAAGCAGATTCACAGCCACAATTACCGTGTTCCTGACCAATTCAAAGATCAGGTGGT 732
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 AGGCAAGCAAATTCACAGCCACAATTACCGTGTTCCTGATCAATTCAAAGATCAGGTGGT 658
Query 733 GATAGTGATCGGAAGCTCTGCGAGTGGAGTTGATATATGCAGAGATATAGCGCAGGTCGC 792
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GATAGTGATCGGAAGCTCAGCGAGTGGAGTTGATATATGCAGAGATATAGCGCAGGTCGC 718
Query 793 GAAAGAAGTCCACGTATCATCTAGATCAACTTCACCGGATACTTACGAGAAGCTTACCGG 852
|||||||||||||||||||||||||||||||||||| || || |||||||||||| ||||
Sbjct 719 GAAAGAAGTCCACGTATCATCTAGATCAACTTCACCAGACACCTACGAGAAGCTTCCCGG 778
Query 853 TTACGAGAATCTATGGCTTCACTCAACGATTCAAATTGCCCGCGAAGACGGTTCGGTGGT 912
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 779 TTACGACAATCTATGGCTTCACTCAACGATTGAAATTGCCCGCGAAGACGGTTCGGTGGT 838
Query 913 TTTCGAGAATGGAAAGACAATTTACGCGGATACCATCATGCATTGTACCGGGTACAAGTA 972
||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 839 TTTCGAGAACAGAAAGACAGTTTACGCGGATACCATTATGCATTGTACCGGGTACAAGTA 898
Query 973 TTACTTCCCGTTTCTTGACACGAAAGGTGAGGTGACTGTTGACGATAATCGTGTTGGACC 1032
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 899 TTACTTCCCGTTTCTTGACACGAAAGGTGAAGTGACTGTCGACGATAATCGTGTTGGACC 958
Query 1033 GTTGTATAAGCATGTTTTTCCTCCAGCTCTTGCCCCCAGCCTTTCGTTCATCGGCTTACC 1092
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 959 GTTGTATAAGCATGTATTTCCTCCAGCTCTTGCCCCGAGCCTTTCGTTTATCGGCTTACC 1018
Query 1093 ATGGCAGATCACTCCCTTTCCGATGTTTGAGCTTCAAAGCAAGTGGGTCGCAGCGGTCTT 1152
||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1019 ATGGCAGATCACTCCATTCCCGATGTTTGAGCTTCAAAGCAAGTGGGTCGCAGCAGTTTT 1078
Query 1153 GTCCGGCCGAGTATCTCTCCCATCGCAAGACGAGATGATGGAAGACACTAAGGCATTCTA 1212
||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1079 GTCCGGCCGGGTATCTCTCCCATCGCAAGACGAGATGAGGGAAGACACTAAGGCGTTCTA 1138
Query 1213 CGATAAGCTAGAAGCCTCGGGAATTCCCAAAAGATATACACATTTGATGCCAGATGACTC 1272
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1139 CGATAAGCTCGAAGCCTCGGGAATTCCCAAAAGATATACACATTTGATGCCTGATGACTC 1198
Query 1273 TCAGTTTGAATACGACAATTGGCTTGCGGATCAATGTGAATATCCCCGGATAGAGAAATG 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCAGTTTGAATACGACAATTGGCTTGCGGATCAATGTGAATATCCCCGGATAGAGAAATG 1258
Query 1333 GAGAGAACAAATGTTTTACATCGGTTTCAAGAGAATATATGCACAATCCTCTACATATAG 1392
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1259 GAGAGAACAAATGTTTTACATAGGTTTCAAGAGAATATATGCACAATCCGCTACATATAG 1318
Query 1393 AGATAATTGGGACGATGATCATCTCATCGTAGAAGCATACGATGATTTCGTCAAATTCAT 1452
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1319 GGATAATTGGGACGATGATCATCTCATCGTAGAAGCATACGATGATTTCGTCAAATTTAT 1378
Query 1453 GTCAAGTTATCAAGAACTTTTGCCGATGCTCAAAACCTAATGATAATTGACGTGGGAG 1510
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1379 GTCAAGCTATCAAGAACTTTTGCCGATGCTAAAAACCTAATGATAATTGACGTGGGAG 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5