BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12240.1
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920058 jgi|Araly1|920058|scaffold_101339.1 3182 0.0
Ahg907175 jgi|Araly1|907175|Al_scaffold_0002_256 1441 0.0
> Ahg920058 jgi|Araly1|920058|scaffold_101339.1
Length=2032
Score = 3182 bits (1723), Expect = 0.0
Identities = 1930/2032 (95%), Gaps = 5/2032 (0%)
Strand=Plus/Plus
Query 29 aaactcgaaaacgagaaaaaTGGCGAGCTCCGATGCTCTCTTGCCAATCTCCGCCAGAGA 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAACTCGAAAACGAGAAAAATGGCGAGCTCCGATGCTCTCTTGCCAATCTCCGCCAGAGA 61
Query 89 AGAAGAACCATTATGTCCTTACACGAGATTACCAATGGCCGACCCGAATCAAGAAACCCA 148
|||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 62 AGAAGAGCCATTATGTCCCTACACAAGATTACCCATGGCCGACCCGAATCAAGAAACCCA 121
Query 149 TGGCCCCCGGAGAAGAAGACCCTTTAAAGGTCTCCTCGCCGTCTCATTTGGTCTCTTGTT 208
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 122 TGG---CCGGAGAAGAAGACCCTTTAAAGGTCTCCTCGCCGTCTCATTTGGTCTTTTGTT 178
Query 209 CATCGCCTTTTACGTCGCTCTCATCGCCACACACGACGGATCTAGATCCAACGACGAAGG 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 TATCGCCTTTTACGTCGCTCTCATCGCCACACACGACGGATCTAGATCCAACGACGCTGG 238
Query 269 GATCGATGAAACAGAGACGATAACGTCACGTGCACGTCTTGCTGGTGTGTCGGAGAAACG 328
|||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 239 GATCCATGAAACAAAGACGACAACGTCACGTGCACGTCTTGCTGGTGTGTCGGAGAAAAG 298
Query 329 TAACGATGGGTTATGGAAACTTTCCGGTGATCGGAACACGCCGGCGTTTGAATGGAACAA 388
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TAATGCTGGGTTATGGAAACTTTCCGGTGATCGGAACACGCCGGCGTTTGAATGGAACAA 358
Query 389 TAGTATGTTGTCGTGGCAACGAACGGCGTTTCATTTTCAGCCTGAGCAAAATTGGATGAA 448
|||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 359 TAGTATATTGTCGTGGCAACGAACGGCGTTTCATTTCCAGCCCGAGCAGAATTGGATGAA 418
Query 449 CGATCCTAACGGTCCATTGTTCTACAAGGGATGGTACCATTTCTTCTACCAATATAACCC 508
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 419 CGATCCTAATGGTCCATTGTTCTACAAAGGATGGTACCATTTCTTCTACCAATATAACCC 478
Query 509 AAACGCAGCCGTATGGGGTGACATTGTTTGGGGTCACGCCGTGTCTAGGGACCTAATCCA 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAACGCAGCCGTATGGGGTGACATTGTTTGGGGTCACGCCGTGTCTAGGGACCTAATCCA 538
Query 569 TTGGGTCCATTTGCCCATAGCCATGGTCGCTGATCAATGGTACGACTCCAACGGTGTGTG 628
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 539 TTGGGTCCATTTGCCCATAGCCATGGTCGCTGATCAATGGTACGACTCCAATGGTGTGTG 598
Query 629 GACCGGCTCAGCCACATTTCTCCCTGATGGCTCTATAGTCATGCTCTATACCGGTTCCAC 688
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GACCGGCTCAGCCACAATACTCCCTGATGGCTCTATAGTCATGCTCTATACCGGTTCCAC 658
Query 689 CGACAAAGCGGTGCAGGTCCAAAACCTTGCCTACCCTGAAGACCCCAACGACCCACTTCT 748
||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 659 CGACAAAGCCGTGCAGGTCCAAAACCTTGCCTACCCTGAGGACCCCAGCGACCCACTTCT 718
Query 749 GTTGAAATGGGTCAAGTTCCCGGGGAACCCGGTTCTAGTACCTCCGCCCGGTATCCTCCC 808
||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 719 GTTAAAATGGGTCAAGTTCCCGGGAAATCCGGTTCTGGTACCTCCGCCCGGTATTCTCCC 778
Query 809 TAAGGACTTCCGTGACCCAACGACTGCATGGAAGACATCAGAAGGAAAATGGCGGATCAC 868
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 779 TAAGGACTTCCGTGATCCAACGACTGCGTGGAAGACATCAGAAGGAAAATGGCGGATCAC 838
Query 869 GATTGGTTCCAAGCTCAACAAAACTGGAATCTCACTCGTGTACGACACAATCGACTTTAA 928
|||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 839 GATTGGCTCCAAGCTCAACAGAACTGGAATCTCACTCGTGTACGACACCACCGACTTTAA 898
Query 929 AACATACGAGAAACTTGACACATTGTTGCACCGAGTTCCCAACACTGGAATGTGGGAGTG 988
||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 899 AACATACGAGAAACTGGACACTTTGTTGCACCGAGTTCCTAACACCGGAATGTGGGAGTG 958
Query 989 TGTTGACTTTTACCCGGTGTCTAAGACTGCGGGCAATGGGCTTGACACATCGGTCAATGG 1048
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||
Sbjct 959 TGTTGACTTTTACCCGGTGTCTAAGACCGCGGTCAATGGGCTCGACACATCGGTCAAAGG 1018
Query 1049 ACCGGATGTGAAGCATATCGTGAAGGCTAGCATGGACGACACGAGGTTCGATCATTATGC 1108
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1019 ACCGGATGTGAAGCATATCGTGAAGGCTAGCATGGACGACACCAGGTTCGACCATTATGC 1078
Query 1109 TGTAGGCACGTATTTCGATTCAAACGGAACATGGATCCCCGATGATCCTACTATCGATGT 1168
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1079 TGTAGGCACGTATTTTGATTCAAACGGAACATGGATCCCGGATGATCCTACTATCGATGT 1138
Query 1169 TGGGATGACTGCCAGTTTAAGATATGATTACGGAAAGTTCTATGCTTCAAAGTCGTTTTA 1228
||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1139 CGGGATGAGTACCAGTTTAAGATATGATTACGGGAAGTTCTATGCTTCAAAAACGTTTTA 1198
Query 1229 CGACCAGAACAAGGGTCGAAGAGTCTTGTGGAGTTGGATTGGTGAGTCTGATAGTGAGGC 1288
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1199 CGACCAGAACAAGGGTCGAAGAGTCTTGTGGAGTTGGATTGGTGAATCTGACAGTGAGGC 1258
Query 1289 TTCTGATGTACAAAAGGGTTGGTCTTCTCTCCAGGGTATCCCAAGAACCGTTGTCCTCGA 1348
| |||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 1259 TGCTGATGTACAAAAGGGTTGGTCGTCTGTTCAGGGTATCCCAAGAACCGTTGTCCTCGA 1318
Query 1349 CACAAAGACAGGAAAGAACTTGGTTCAATGGCCAGTAGAAGAAATCAAATCTCTTAGACT 1408
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CACAAAGACAGGAAATAACTTGGTTCAATGGCCAGTAGAAGAAATCAAATCTCTTAGACT 1378
Query 1409 AAGCAGCAAGCAATTTGATCTCGAGGTCGGTCCCGGGTCAGTGGTACCGGTCGATGTAGG 1468
|||||||||||| |||||| || ||||| |||| |||||||||||||| || ||||||||
Sbjct 1379 AAGCAGCAAGCAGTTTGATATCAAGGTCAGTCCTGGGTCAGTGGTACCCGTAGATGTAGG 1438
Query 1469 TTCCGCAGCTCAGCTAGACATCGAAGCAGAATTCGAGATTAACAAAGAATCTCTAGACAA 1528
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1439 TTCCGCGGCTCAGCTAGACATCGAAGCAGAATTCGAGATTAATAAAGAATCTCTAGACAA 1498
Query 1529 AAT-CATCGGAAACGCTTCGGTAGTGGCTGAAGCCGAGGAATTTAGCTGCGAAAAAAGCG 1587
||| | |||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1499 AATTC-TCGGAAACGCTTCGGTAGTGGCTGTAGCCGAGGAATTTAGCTGCGAGAAAAGCG 1557
Query 1588 GAGGCTCCACCGTCCGTGGTGCTTTAGGGCCATTCGGATTCTCGGTACTTGCCACAGAGA 1647
|||||||||||||||||||||||||||||||||| ||||||||||| || || || || |
Sbjct 1558 GAGGCTCCACCGTCCGTGGTGCTTTAGGGCCATTTGGATTCTCGGTTCTCGCTACTGAAA 1617
Query 1648 GCTTGTCTGAGCAAACACCGGTTTACTTCTATGTAGCTAAGGGAAAAGATTCAGAGCTCA 1707
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1618 GCTTGTCAGAGCAAACACCGGTTTACTTCTATGTAGCTAAAGGAAAAGATTCAGAGCTCA 1677
Query 1708 AAACTTTCTTCTGCACAGACACCTCAAGGTCATCTGTTGCAAACGATGTCGTTAAACCGA 1767
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1678 AAACTTTCTTCTGCACAGACACCTCAAGGTCATCTGTAGCTAACGATGTCGTTAAACCGA 1737
Query 1768 TATACGGTAGCGTCGTACCGGTTCTAAAAGGGGAGAAACTGACCATGAGAATTTTGGTGG 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TATACGGTAGCGTCGTACCGGTTCTAAAAGGGGAGAAACTGACCATGAGAATTTTGGTGG 1797
Query 1828 ATCATTCGATAGTAGAAGCATTCGGACAAGGTGGAAGAACATGTATAACATCAAGAGTCT 1887
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1798 ATCATTCGATAGTAGAAGCATTTGGACAAGGTGGAAGAACATGTATAACATCAAGAGTTT 1857
Query 1888 ATCCAACAACTGCAATCTATGGAGCAGCCAAGCTCTTCTTGTTCAATAATGCTCTTGATG 1947
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1858 ATCCGACAAGTGCAATCTATGGAGCAGCCAAGCTTTTCTTGTTCAATAATGCTCTTGATG 1917
Query 1948 CGACGGTTACGGCGTCGTTTACAGTTTGGCAAATGAACAGTGCTTTTATTCATCCTTACT 2007
| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1918 CTACTGTTACGGCGTCGTTTAGAGTTTGGCAAATGAACAGTGCTTTTATTCATCCTTACA 1977
Query 2008 CTGACGAAGCTGTCCGTGCTCTCTCCCGTACCTGATTATTTTTACTTCCTTC 2059
|||| |||||| ||||||||||| ||||||||||||||||| |||| |||||
Sbjct 1978 CTGAGGAAGCTTTCCGTGCTCTCACCCGTACCTGATTATTTCTACTGCCTTC 2029
> Ahg907175 jgi|Araly1|907175|Al_scaffold_0002_256
Length=1965
Score = 1441 bits (780), Expect = 0.0
Identities = 1561/1927 (81%), Gaps = 98/1927 (5%)
Strand=Plus/Plus
Query 162 AGAAGACCCTTTAAAGGT-C-TCCTCGCCGTCTCATT-TGGTCT-CTTGTTCATCGCCTT 217
||||||||| | ||| || | | |||||| ||| ||| ||| | | | || || | |||
Sbjct 91 AGAAGACCCATCAAA-GTCCAT-CTCGCCATCT-ATTCCGGTTTGC-TCTTGATTG-CTT 145
Query 218 T-TACGTCGCTCTCATCGCCACACACGACGGATCTAGATC-CAACGACGAAGGGATCGAT 275
| ||||| |||||||||| ||||||||| ||||| | || |||| | | | | |||
Sbjct 146 TGTACGTTGCTCTCATCGTCACACACGATGGATCCACCTCTCAAC-ATGGCGCCAAGGAT 204
Query 276 GAAACAGAGACGATA-ACGTCACGTGCACGTCTT-GCTGGTGTGTCGGAGAA-ACGTAAC 332
||||| | ||| | | ||||||||| ||| || || || ||||||||||| | | |||
Sbjct 205 GAAAC---GTCGACAGA-GTCACGTGCTCGT-TTGGCCGGCGTGTCGGAGAAGA-GCAAC 258
Query 333 GA-TGGGTTATGGAAACTT-TCCGGTGATCGGAACACGCCG--GCGTTTGAATGGAACAA 388
|| | ||| | || | || || | ||||||||| | | | ||||| | ||||||||
Sbjct 259 GACCGAGTT-TCGAGA-TTATCAGATGATCGGAA-A-GTTGAAGCGTTCGCGTGGAACAA 314
Query 389 TAGTATGTTGTCGTGGCAACGAACGGCGTTTCATTTTCAGCCTGAGCAAAATTGGATGAA 448
|| |||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 315 TACTATGTTGTCGTGGCAACGCACGGCGTTTCATTTCCAGCCTGAGAAAAATTGGATGAA 374
Query 449 CGATCCTAACGGTCCATTGTTCTACAAGGGATGGTACCATTTCTTCTACCAATATAACCC 508
||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 375 CGATCCTAATGGTCCATTGTTCTATAAGGGATGGTACCATTTCTTCTATCAATACAACCC 434
Query 509 AAACGCAGCCGTATGGGGTGACATTGTTTGGGGTCACGCCGTGTCTAGGGACCTAATCCA 568
||| ||||| || |||||||||||||||||||| ||||||||||| | |||||| |||||
Sbjct 435 AAATGCAGCTGTGTGGGGTGACATTGTTTGGGGCCACGCCGTGTCAAAGGACCTTATCCA 494
Query 569 TTGGGTCCATTTGCCC-ATAGCCATGG-TCGCTGATCAATGGTACGACTCCAACGGTGTG 626
||| | || | ||| |||||||||| || |||| |||||||||||| | ||||| ||
Sbjct 495 CTGGCTTTATCT-CCCAATAGCCATGGTTC-CTGACCAATGGTACGACGCTAACGGCGTC 552
Query 627 TGGACCGGCTCAGCCACATTTCTCCCTGATGGCTCTATAGTCATGCTCTATACCGGTTCC 686
|||||||| |||||||| ||||| ||||||||| || ||||||||||| |||||||||
Sbjct 553 TGGACCGGTTCAGCCACTTTTCTAGATGATGGCTCCATTGTCATGCTCTACACCGGTTCC 612
Query 687 ACCGACAAA-GCGGTGCAGGTCCAAAACCTTGCCTACCCTGAAGACCCCAA-CGACCCAC 744
|| || ||| | || ||||| ||||||||||| || ||||| || ||||| ||||||||
Sbjct 613 ACTGATAAATTC-GTACAGGTTCAAAACCTTGCATATCCTGAGGA-CCCAAGCGACCCAC 670
Query 745 TTCTGTTGAAATGGGTCAAGTTC-CCGGGGAACCCGGTTCTAGTACCTCCGCCCGGTA-T 802
|| |||||||||||| ||||||| || || ||||||||||| |||||||| || |||| |
Sbjct 671 TTTTGTTGAAATGGGCCAAGTTCTCC-GGCAACCCGGTTCTCGTACCTCCACCAGGTATT 729
Query 803 CCTCCCTAAGGACTTCCGTGACCCAACGACTGCATGGAAGACATCAGA-AGGAAAATGGC 861
| | ||||||||||||||||||||||| || ||||| ||||| || ||||||||||
Sbjct 730 GGT-GCAAAGGACTTCCGTGACCCAACGACGGCCTGGAAAACATC-GACCGGAAAATGGC 787
Query 862 GGATCACGATTGGTTCCAAGCTCAACAAAACTGGAATCTCACTCGTGTACGACACAATCG 921
| ||||| || || ||||| |||| | ||| ||||| || ||| | || ||||| | ||
Sbjct 788 GAATCACCATCGGCTCCAAAATCAATAGAACCGGAATATCTCTCATTTATGACACTACCG 847
Query 922 ACTTT-AAAACATACGAGAAACTTGACACATTGTTGCACCGAGTTCCC-AACACTGGAAT 979
| ||| ||||| |||||||||| || || |||||||||| || |||| ||||| |||||
Sbjct 848 A-TTTCAAAACTTACGAGAAACACGATACCTTGTTGCACCAAG-TCCCTAACACCGGAAT 905
Query 980 GTGGGAGTGTGTTGACTTTTACCCGGTGTCTAAGACTGC-GGGCAATGGGCTTGACACAT 1038
||||||||| ||||| |||||||| ||||| |||||| | | ||||||||| || || |
Sbjct 906 GTGGGAGTGCGTTGATTTTTACCCTGTGTCGAAGACT-CAAGTCAATGGGCTCGATACTT 964
Query 1039 CGGTCAATGGACCGGATGTGAAGCATATCGTGAAGGCTAGCATGGACGACACGAG-GTTC 1097
||||||| || || ||||| |||||| || | ||||||||||||||||| || || ||
Sbjct 965 CGGTCAACGGGCCAGATGTCAAGCATGTCATCAAGGCTAGCATGGACGATACTAGAATT- 1023
Query 1098 GATCATTATGCTGTAGGCACGTATT-TCGATTCAAACGGAACATGGATCCCCGATGATCC 1156
|| ||||| || | || ||||||| | ||||||||||| |||||| |||| ||| ||||
Sbjct 1024 GACCATTACGCCATTGGGACGTATTAT-GATTCAAACGGTACATGGGTCCCGGATAATCC 1082
Query 1157 TACTATCGATGTTGGGATGACTGCCAG-TTTAAGATATGATTAC-GGAAAGTTCTATGCT 1214
| |||||||||| || || | | || | ||| ||||| |||||| ||||| || |||||
Sbjct 1083 TTCTATCGATGTCGGAATCAGTACC-GCTTTGAGATACGATTACGGGAAA-TTTTATGCG 1140
Query 1215 TCAAAGTCGTTTTACGACCAGAACAAGGGTCGAAGAGTCTTGTGGAGTTGGATTGGTGAG 1274
|||||| |||||||||| || || ||||| || ||| |||| ||| |||||||||||||
Sbjct 1141 TCAAAGACGTTTTACGATCAAAATAAGGGACGGAGAATCTTATGGGGTTGGATTGGTGAA 1200
Query 1275 TCTGATAGTGAGGCTTCTGATGTACAAAAGGGTTGGTCTTCTCTCCAGGGTATCCCAAGA 1334
||||| ||||| ||| |||||||||||||||||||||||||| | ||||| |||||||||
Sbjct 1201 TCTGACAGTGAAGCTGCTGATGTACAAAAGGGTTGGTCTTCTGTTCAGGGCATCCCAAGA 1260
Query 1335 ACCGTTGTCCTCGACACAAAGAC-AGGAAAGAACTTGGTTCAATGGCCAGTAGAAGAAAT 1393
|| |||||| | ||||||| ||| ||||| ||||| || || |||||||| || |||||
Sbjct 1261 ACTGTTGTCTTGGACACAAGGACGCGGAAA-AACTTAGTCCAGTGGCCAGTTGAGGAAAT 1319
Query 1394 CAAATCTCTT-AGACTAAGCAGCAAGC-AATTTGATC-TCGA-GGTCGGTCCCGGGTCAG 1449
|||||| || |||||||||||||| | ||||||| | | || | | || || ||| |||
Sbjct 1320 CAAATC-ATTGAGACTAAGCAGCAA-CAAATTTGA-CAT-GACGATTGGACCAGGGACAG 1375
Query 1450 TGGTACCGGTCGATGTAGG-TTCCGCAG-CTCAGCTAGACATCGAAGCAGAATTCGAGAT 1507
|||| ||||| ||||| || ||| || | ||||||||||||| || || || ||||||||
Sbjct 1376 TGGTTCCGGTAGATGT-GGATTCTGC-GACTCAGCTAGACATAGAGGCCGAGTTCGAGAT 1433
Query 1508 -TA-ACAAAGAATCTCTAGACAAAATCATCGGA-AACG-CTTCGGTAG-TGGCTGAAGCC 1562
| || || ||||| | || | || | || | | | || |||| || | | | |
Sbjct 1434 CAAGACGGAGGATCTC-AAAC-TATTC-TTTGATGATGAC-TCCGTAGATGTC-G-A--C 1485
Query 1563 GAGGAATTTAGCTGCGAAAAAAGCGGAGGCTCCACCGTCCGTGGTGCTTTAGGGCCATTC 1622
| |||| |||||||||| |||||||||||||| | ||||||||||||||||| ||
Sbjct 1486 AAAAAATTCAGCTGCGAAACCAGCGGAGGCTCCACGGGACGTGGTGCTTTAGGGCCTTTT 1545
Query 1623 GGATTCTCGGTACTTGC-CACAGAGAGCTTGTCTGAGCAAACACCGGTTTACTTCTATGT 1681
|||||||| || ||||| || || |||||||| || ||||| |||||||||||||||||
Sbjct 1546 GGATTCTCCGTTCTTGCTGAC-GAAAGCTTGTCAGAACAAACTCCGGTTTACTTCTATGT 1604
Query 1682 AG-CTAAGGGAAAAGATTCAGAGCTCAAAACTTTCTTCTGCACAGACACCTCAAGGTC-A 1739
| ||||||||||| ||||| | ||||||||| |||||||||| ||||||||||| || |
Sbjct 1605 -GACTAAGGGAAAACATTCAAAACTCAAAACTGTCTTCTGCACTGACACCTCAAGATCGA 1663
Query 1740 TCTGTTGCAAACGATGTCGTTAAACCGATATACGGTAGCGTCGTACCGGTTCTAAAAGGG 1799
|| | ||||||||||| || |||||||| || || ||| |||||||||| ||||||||
Sbjct 1664 -CTATGGCAAACGATGTGGTGAAACCGATCTATGGAAGCTTCGTACCGGTCCTAAAAGGA 1722
Query 1800 GAGAAACTGACCATGAGAATTTTGGTGGATCATTCGATAGTAGAAGCATTCGGACAAGGT 1859
|||||| | || |||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1723 GAGAAATTAACAATGAGAATCTTGGTGGATCATTCGATAGTAGAAGGATTCGCACAAGGA 1782
Query 1860 GGAAGAACATGTATAACATCAAGAGTCTATCCAACAACTGCAATCTATGGAGC-AGCCAA 1918
|||||||||||||| || |||||||| ||||| |||| |||||||||||||| | | ||
Sbjct 1783 GGAAGAACATGTATTACCTCAAGAGTATATCCCACAAAAGCAATCTATGGAGCTA-CAAA 1841
Query 1919 GCTCTTCTTGTTCAATAATGCTC-TTGATGCGACGGTTACGGCGTCGTTTACAGTTTGGC 1977
|||||||||||||| || || | |||||||||| || ||||||||||||| |||||||
Sbjct 1842 ACTCTTCTTGTTCAACAACGC-CATTGATGCGACCGTAACGGCGTCGTTTAGGGTTTGGC 1900
Query 1978 AAATGAACAGTGCTTTTATTCATCCTTACTCTG-ACGAAGCTGTCCGTGCTCTCT-CCCG 2035
|||||||||||||||||||||||||||||||| | || | | || ||| || || ||||
Sbjct 1901 AAATGAACAGTGCTTTTATTCATCCTTACTCTCCA-GACGATCTCAGTGTTC-CTTCCCG 1958
Query 2036 TACCTGA 2042
|||||||
Sbjct 1959 TACCTGA 1965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83912809735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5