BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12370.2
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471385 jgi|Araly1|471385|fgenesh2_kg.1__1339__AT1G12370.2 2673 0.0
> Ahg471385 jgi|Araly1|471385|fgenesh2_kg.1__1339__AT1G12370.2
Length=1679
Score = 2673 bits (1447), Expect = 0.0
Identities = 1602/1679 (95%), Gaps = 1/1679 (0%)
Strand=Plus/Plus
Query 1 ATCGCGCGCTTTGTCGCTTGAGCATCCCCTGCGCAAATTATCCTCCTCCGCCGTCGCATA 60
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 1 ATCGCGCGCTTTGTCGCTTGAGCATCCCCTGCGCAAGTTATCCTCCTCCGCTGTCGTATA 60
Query 61 ACCGGCGCACATTAGTG-AAATCGGAAAAATCCGTCTCTCCTCCTTCGTAATGGCGTCGA 119
| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 61 AACGGCGCACATTAGTGAAAATCCGAAAAATCCGTCTCTCCTCCTTCGTAATGGCGACGG 120
Query 120 CAGTCTCAGTTCAACCGGGTCGGATCCGGATCCTAAAGAAAGGCTCATGGCAACCGTTGG 179
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CAATCTCCGTTCAAACGGGTCGGATCCGGATCCTAAAGAAAGGCTCATGGCAACCGTCGG 180
Query 180 ATCAAACGGTGGGTCCCGTCGTTTACTGGATGTTCAGAGATCAACGGTTGAAAGATAACT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 ATCAAACGGTGGGTCCCGTCGTTTACTGGATGTTCAGAGATCAACGGTTGAAAGACAACT 240
Query 240 GGGCGTTAATCCACGCCGTTGATCTGGCAAACAGAACCAACGCGCCGGTGGCCGTCGTTT 299
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 241 GGGCGTTAATCCATGCCGTTGATCTTGCAAACAGAACCAACGCGCCGGTGGCCGTCGTGT 300
Query 300 TCAATCTGTTCGATCAATTTCTGGACGCAAAAGCGAGGCAATTAGGGTTTATGTTAAAGG 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCAATCTGTTCGATCAGTTTCTGGACGCAAAAGCGAGGCAATTAGGGTTTATGTTAAAGG 360
Query 360 GTTTGCGTCAGCTTCACCACCAAATCGATTCTCTCCAAATTCCGTTTTTTCTCTTACAGG 419
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 GTTTGCGCCAGCTTCACCACCAAATCGATTCTCTTCAAATTCCGTTTTTTCTCTTACAGG 420
Query 420 GAGATGCAAAGGAGACAATCCCTAATTTCCTCACAGAATGTGGAGCTTCACATCTGGTTA 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGATGCAAAGGAGACAATTCCTAATTTCCTCACAGAATGTGGAGCTTCACATCTGGTTA 480
Query 480 CTGATTTCTCTCCTTTACGGGAAATCCGGCGTTGTAAAGATGAGGTTGTCAAGAGAACGA 539
|||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||| ||||
Sbjct 481 CTGATTTCTCGCCTTTACGGGAAATTCGGAGTTGTAAAGATGAGGTTGTGAAGAGGACGA 540
Query 540 GTGATTCATTAGCGATACATGAAGTTGATGCTCACAATGTAGTTCCAATGTGGGCTGCTT 599
||||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||
Sbjct 541 GTGATTCATTAGCAATTCATGAAGTTGATGCACACAATATAGTTCCAATGTGGGCTGCTT 600
Query 600 CGAGTAAATTGGAGTACAGTGCTAGAACAATTAGGGGTAAGATCAACAAGCTACTACCTG 659
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGGGTAAATTGGAGTACAGTGCTAGAACAATTAGGGGTAAGATCAACAAGCTACTACCTG 660
Query 660 ATTACCTCATTGAGTTTCCTAAACTTGAGCCGCCGAAGAAGAAATGGACGGGGATGATGG 719
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 661 ATTACCTCATTGAGTTTCCTAAACTTGAGCTGCCGAAGAAGAAGTGGACCGGGATGATGG 720
Query 720 ATAAGAAGCTTGTTGATTGGGATAGCCTCATTGATAAAGTTGTAAGGGAGGGTGCAGAAG 779
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 721 ATAAGAAGCTGGTTGATTGGGATAGCCTCATTGATAAAGTTGTAAGGGAGGGTGGAGAAG 780
Query 780 TTCCTGAAATTGAATGGTGTGTGCCTGGAGAAGATGCAGGGATTGAAGTATTGATGGGGA 839
||||||| ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||
Sbjct 781 TTCCTGAGATTGAATGGTGTGTGCCGGGAGAAGATGCGGGGATGGAAGTATTAATGGGGA 840
Query 840 ATAAAGATGGTTTTTTGACGAAGAGGTTGAAGAATTATTCAACTGACCGGAATAATCCTA 899
| |||||||| |||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 841 AGAAAGATGGGTTTTTGACAAAGAGGTTGAAGAATTATTCAGCGGACCGGAATAATCCTG 900
Query 900 TAAAGCCGAAAGCACTCTCTGGTCTCTCTCCTTATCTACATTTCGGGCAGGTATCAGCTC 959
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 TAAAGCCGAAAGCACTCTCTGGTCTCTCTCCTTATCTACATTTCGGGCAGATATCAGCTC 960
Query 960 AGCGTTGTGCCTTGGAGGCGCGTAAAGTCCGGAGTACTTCCCCTCAGGCGGTAGACACAT 1019
|||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 961 AGCGATGTGCCTTGGAGGCGCGTAAAGTCCGGAATACTTCCCCTCAGGCGGTCGACACAT 1020
Query 1020 TCTTGGAAGAATTGATTGTGCGAAGAGAACTCTCCGACAATTTTTGCTATTATCAACCTC 1079
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 TCTTGGAAGAATTGATTGTGCGAAGAGAACTCTCCGACAATTTTTGCTACTATCAACCTC 1080
Query 1080 ATTATGATTCTTTGAAGGGAGCTTGGGAGTGGGCACGCAAGTCACTAATGGATCATGCTT 1139
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1081 ATTATGATTCTTTGAAGGGAGCTTGGGAGTGGGCACGCAAGTCATTAATGGATCATGCTT 1140
Query 1140 CAGATAAGAGGGAACACATTTACTCGTTGGAGCAGTTAGAGAAGGGACTGACAGCAGATC 1199
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1141 CAGATAAGAGAGAACACATTTACTCGTTGGAGCAGTTAGAGAAGGGACAGACAGCTGATC 1200
Query 1200 CTCTATGGAATGCTTCACAGTTAGAGATGGTTTATCAAGGGAAAATGCACGGTTTCATGC 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTCTATGGAATGCTTCACAGTTAGAGATGGTTTATCAAGGGAAAATGCACGGTTTCATGA 1260
Query 1260 GAATGTATTGGGCAAAGAAGATTCTAGAATGGACCAAGGGACCTGAAGAGGCTCTCTCAA 1319
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1261 GAATGTATTGGGCAAAGAAGATTCTAGAATGGACCAAAGGACCTGAAGAGGCCCTCTCAA 1320
Query 1320 TATCCATCTATCTAAATAACAAGTATGAGATTGATGGTCGTGACCCGAGTGGATATGTTG 1379
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TATCCATATATCTAAATAACAAGTATGAGATTGATGGTCGTGACCCGAGTGGATATGTTG 1380
Query 1380 GGTGCATGTGGTCTATATGTGGCGTTCATGATCAGGGATGGAAAGAGAGGCCGGTTTTTG 1439
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1381 GGTGTATGTGGTCTATATGCGGTGTTCATGATCAGGGATGGAAAGAGAGGCCGGTTTTTG 1440
Query 1440 GGAAGATACGGTACATGAACTACGCGGGTTGCAAACGGAAATTCAATGTGGATAGTTACA 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1441 GGAAGATACGGTACATGAACTACGCGGGTTGCAAACGGAAATTCAATGTGGACAGTTACA 1500
Query 1500 TCTCTTATGTCAAGAGTTTGGTGTCAGTAACAAAGAAGAAGAGGAAAGCTGAAGAACAGC 1559
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1501 TCTCTTATGTCAAGAGTTTTGTGTCAGTAACAAAGAAGAAGAGGAAAGCCGAAGAACAGC 1560
Query 1560 TCACCAGAGACTCTGTTGATCCCAAGATAACTATTGTTTAGGTTAACTTTGAATGCCTTG 1619
| |||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 1561 TTACCAGAGACTCTATTGATCCCAAGATAAATAGTGTTTAGGTTAACTTCGAATGCCTTT 1620
Query 1620 GTATTGTTACTTGTTAGACTACTTTGCCCTGTGTTGGGCATTTTTATATTCAACGTATT 1678
|| ||||||||||||||||||| |||||||| ||||| || |||||||||||| |||||
Sbjct 1621 GTGTTGTTACTTGTTAGACTACCTTGCCCTGCGTTGGCCAGTTTTATATTCAATGTATT 1679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64753416500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5