BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12440.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471394 jgi|Araly1|471394|fgenesh2_kg.1__1348__AT1G12440.1 1112 0.0
> Ahg471394 jgi|Araly1|471394|fgenesh2_kg.1__1348__AT1G12440.1
Length=741
Score = 1112 bits (602), Expect = 0.0
Identities = 698/744 (94%), Gaps = 8/744 (1%)
Strand=Plus/Plus
Query 231 TTTCCATTATGGGTTCTGAGCAAAACGACAGCACAAGCTTCTCTCCTTCAGAGCCAAAGC 290
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TTTCAATTATGGGTTCTGAGCAAAACGACGGCACAAGCTTCTCTCCTTCAGAGCCAAAGC 60
Query 291 TCTGCGTCAAAGGATGTGGCTTCTTCGGATCTCCATCGAACATGAACCTCTGCTCTAAAT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TCTGCGTCAAAGGATGTGGCTTCTTCGGATCTCCATCGAACATGAACCTCTGCTCCAAAT 120
Query 351 GCTACAGAGACATCCGAGCCACGGAGGAACAAACCGCTTCCGCTAAAGCCGCCGTCGAGA 410
||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 121 GCTACCGAGACATCCGAGCTACGGAGGAACAAACCGCTTCGGCTAAAGCCGCCGTGGAGA 180
Query 411 AATCTCTAAACCCTAATAAACCCAAAACTC-AACCACAACAGAGCCAAGAAATCACTCAA 469
|||||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||
Sbjct 181 AATCTCTAAACCCTAACAAACCCAAAA-TCCAACCACAACAGAGCCAAGAAACCACTCAA 239
Query 470 GGCGTCCTCGGATCTGGATCGTCTTCCTCATCAACGA-GAG-GG-GGTGATTCGGCTGCT 526
|||||||||| ||||||||| |||||||||||||| | ||| || ||||||||||||||
Sbjct 240 GGCGTCCTCGAATCTGGATCTTCTTCCTCATCAACAACGAGCGGTGGTGATTCGGCTGCA 299
Query 527 GCTCCGTTGGATCCACCGAAATCGACGGCTACGAGATGCTTGAGCTGTAACAAGAAAGTT 586
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTCCTTTGGATCCACCGAAATCGACGGCTACGAGATGCTTGAGCTGTAACAAGAAAGTG 359
Query 587 GGCGTGACGGGTTTCAAGTGTAGGTGTGGAAGCACTTTCTGTGGAACTCATAGATATCCA 646
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 360 GGCGTGACGGGTTTCAAGTGTAAGTGTGGGAGCACTTTCTGTGGAACTCATAGATATCCA 419
Query 647 GAGAGTCACGAGTGCCAATTCGATTTCAAAGGAGTTGCGAGAGAAGCTATTGCTAAAGCT 706
|||| ||| |||||| ||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 420 GAGACTCATGAGTGCGAATTCGATTTCAAAGGAGTCGCGAGAGAAGCCATTGCTAAGGCT 479
Query 707 AATCCTGTGGTGAAGGCTGATAAGGTTGATAGGATATGAATTGGTGAAGAAACTGTTGTG 766
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 480 AATCCTGTGGTGAAGGCTGATAAGGTTGAGAGGATATGAATTGGTGAAGAAACTGGTGTG 539
Query 767 TTCTCttt-tgtttttttattttCAAGTCTCGTGATGTTGGTGGTTTGGCTCTCTGTTTT 825
|||||||| | ||||||||| || ||||||||||||||||||||||||||||| | ||||
Sbjct 540 TTCTCTTTGTTTTTTTTTATATTAAAGTCTCGTGATGTTGGTGGTTTGGCTCT-T-TTTT 597
Query 826 CTGCTCTTATTATGGTTTTATTTGCTTTTAGGGTTTCTTAGGAAAGGCCTTAGATTCTGC 885
|||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||
Sbjct 598 CTGCTCTTATTATGGTTTGATTTGCTTTTAGGGTTTCTTAGAAAAGGTTTTCGATTCTGC 657
Query 886 TATTATGTGGTTTCATGTTTTGCAACATTGGATTTGTTGTTCTGTAATAAAGTGTTGGTT 945
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 658 TATTATGTGGTTTCATGATTTGCAACATTGGATTTGTTGTTCTGTAATAAATTGTTGGTC 717
Query 946 ATATTATGAAATTGTGTTCTTATT 969
|||| || ||||||||||||||||
Sbjct 718 ATATCATAAAATTGTGTTCTTATT 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5