BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12520.1
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471402 jgi|Araly1|471402|fgenesh2_kg.1__1356__AT1G12520.1 1478 0.0
> Ahg471402 jgi|Araly1|471402|fgenesh2_kg.1__1356__AT1G12520.1
Length=989
Score = 1478 bits (800), Expect = 0.0
Identities = 933/997 (94%), Gaps = 10/997 (1%)
Strand=Plus/Plus
Query 1 GCCGCAAAAACTGAAGAAGCAAGATAATGGCATCAATTCTCAGGTCAGTGGCAACGACTT 60
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GCCGCAAAAGTTGAAGAAGCAAGAAAATGGCATCAATTCTCAGGTCAGTGGCAACGACTT 60
Query 61 CAGCCGTCGTAGCCGCCGCCTCTGCGATTCCCATCGCGATCGCcttctcttcttcttctt 120
|||||||||||||||| || ||||||||||||||||| |||| | |||| |||||||
Sbjct 61 CAGCCGTCGTAGCCGCTGCGTCTGCGATTCCCATCGCAATCG----C-CTTC-TCTTCTT 114
Query 121 cttcttcctctaccaaccccaaatctcaatctctcaatttctccttcctctccCGATCGT 180
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 115 CTTCTTCCTCTACCAACCCCAAATCTCAATATCTCAATTTCTCTTTCCTCTCCCGATCAT 174
Query 181 CTCCACGTCTCTTGGGACTTTCACGAAGCTTCGTTAGCTCTCCGATGGCGACTGCTCTCA 240
||||||||| |||||||||| |||||||||||| ||||||||||||| |||| | |||||
Sbjct 175 CTCCACGTCGCTTGGGACTTACACGAAGCTTCGCTAGCTCTCCGATGACGACCGTTCTCA 234
Query 241 CTTCTGATCGTAATCTCCATCAGGAGGATCGAGCCATGCCTCAGCTTCTTACTGAGTTTA 300
|||||||||||||||||| |||||||||||| | ||| |||||||| |||||||||||||
Sbjct 235 CTTCTGATCGTAATCTCCCTCAGGAGGATCGTGTCATACCTCAGCTCCTTACTGAGTTTA 294
Query 301 TGGTGGATATGACATGTGAGGGTTGTGTTAATGCTGTGAAGAACAAATTAGAAACCATTG 360
|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 295 TGGTTGATATGAAATGTGAGGGTTGTGTTAATGCCGTGAAGAACAAATTAGAAACCATTG 354
Query 361 AAGGTATTGAGAAA-GTGGAGGTGGATTTGTCCAATCAAGTTGTGAGGATACTTGGATCT 419
|||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 355 AAGGGATTGA-AAACGTGGAGGTGGATTTGTCCAACCAAGTTGTGAGGATACTTGGATCT 413
Query 420 TCCCCTGTTAAGGCTATGACTCAAGCTTTGGAGCAAACTGGTCGAAAAGCTCGCTTAATT 479
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 414 TCCCCTGTTAAGGCTATGACCCAAGCTTTGGAGCAAACCGGTCGAAAAGCTCGATTAATT 473
Query 480 GGACAAGGTGTTCCTCAAGATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCT 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 474 GGACAAGGTGTTCCTCAAGATTTCTTAGTCTCAGCTGCAGTAGCGGAATTCAAAGGCCCT 533
Query 540 GACATTTTCGGGGTAGTCCGATTTGCTCAGGTCAGTATGGAACTTGCAAGAATCGAAGCC 599
||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GACATATTCGGGGTGGTCAGATTTGCTCAGGTCAGTATGGAACTTGCAAGAATCGAAGCC 593
Query 600 AACTTTACCGGTTTGTCACCCGGAACCCACAGCTGGTGTATCAACGAGTATGGAGATCTC 659
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 594 AACTTCACCGGTTTGTCACCCGGAATCCACAGCTGGTGTATTAACGAGTATGGAGATCTC 653
Query 660 ACAAACGGAGCAGCCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAA-ACTGGCAC 718
||||||||||||||||||||||||| ||||||||||||||| |||||| || || |||
Sbjct 654 ACAAACGGAGCAGCCAGCACAGGGAACTTGTACAATCCATTGCAAGAT-AATACCAACAC 712
Query 719 AGAGCCATTGGGAGACCTGGGAACACTAGAGGCAGACAAAAACGGAGAGGCCTTTTATTC 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 713 AGAGCCATTGGGAGACCTGGGAACACTAGAGGCAGACAAAAACGGAGAGGCCTTTTATAC 772
Query 779 GGGAAAGAAAGAGAAACTCAAGGTTGCAGACCTTATCGGGAGAGCCGTCGTGGTGTACAA 838
||||||||||||||||||||||||||| || ||||||||| ||||||| |||||||||||
Sbjct 773 GGGAAAGAAAGAGAAACTCAAGGTTGCGGATCTTATCGGGCGAGCCGTTGTGGTGTACAA 832
Query 839 GACCGATGATAATAAGTCAGGCCCCGGATTGACCGCCGCAGTGATTGCTAGAAGCGCAGG 898
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 833 GACCGAGGATAATAAGTCAGGCCCCGGATTGACCGCTGCTGTGATAGCTAGAAGCGCAGG 892
Query 899 GGTTGGAGAAAACTACAAAAAACTTTGTTCTTGTGATGGTACTGTCATATGGGAAGCTAC 958
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 893 AGTTGGAGAAAACTACAAAAAGCTTTGTTCTTGTGATGGTACTGTCATATGGGAAGCAAC 952
Query 959 AAACAGCGATTTCGTGGCCAGTAAGGTTTAATAACAA 995
|||||||||||||||| |||||||||| |||||||||
Sbjct 953 AAACAGCGATTTCGTGACCAGTAAGGTATAATAACAA 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43269510795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5