BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12580.1 Length=1972 Score E Sequences producing significant alignments: (Bits) Value Ahg471407 jgi|Araly1|471407|fgenesh2_kg.1__1361__AT1G12580.1 2833 0.0 > Ahg471407 jgi|Araly1|471407|fgenesh2_kg.1__1361__AT1G12580.1 Length=1933 Score = 2833 bits (1534), Expect = 0.0 Identities = 1834/1973 (93%), Gaps = 44/1973 (2%) Strand=Plus/Plus Query 4 AGAGGACTGGGTCTGGTCTCTTCGCTGCAACCTATAGCTGTTG-TTTGCTCTTCGACGGG 62 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 AGAGGACTGGGTCTGGTCTCTTCGCTGCAACCTATAGCTGTTGTTTTGCTCTTCGACGGG 60 Query 63 ATTCTCACTACTCTTTTGCCaaaaaaaaGAGATCGGAGGTTCCGAAGGTGAATGCAGCTT 122 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 61 ATTCTCACTACTCTTTTGCAAAAAAAAAAAGATCGGAGGTTCCGAAGGTGAATGCAGCTT 120 Query 123 GCGATTTCATAGAAAAGAAGATTCGTTTGCTGGATTAGGCTTATTTGTGTATCATAGCTT 182 |||||||||| ||| ||||||||| ||| |||||||||||| ||| |||| ||| || Sbjct 121 GCGATTTCATCGAAGAGAAGATTCACCTGCCGGATTAGGCTTAATTGGGTATTATAACTG 180 Query 183 TGAGGTTTTAACTGAGATTTATTGATAGTGGAACTTAGGTTTTCGAGAGGTGTGAACAGT 242 | || || || |||||| | || || | | | |||| | || | || | Sbjct 181 TAAGATTGTACCTGAGA--T-TT-AT--T-G--C-TAGG---T-GA-A--CGT------T 217 Query 243 TGGGTATATGGGTATGGACATAGCTGATAAGGAGAATACGAGCCCGCTTTTATTTGAATT 302 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 218 TGGGTATATGGGTATGGACATAGCTGATAAAGAGAATACGAGCCCGCTTTTATTTGAATT 277 Query 303 CTGCAATTGCTATAAAGTTGCAAGCCTTACTGAAACCATTCTAAACCCTGTAAATGTTTC 362 ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 278 CTGCAATTGTTATAAAGTTGCTAGCCTTACTGAAACCATTCTAAACCCGGTAAATGTTTC 337 Query 363 CAACTTAAAAGATAGATATGTACTTGGAGAACAGTTAGGCTGGGGTCAGTTTGGTGTGAT 422 ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 338 CAACTTAAAAGATCGATATGTGCTTGGAGAACAGTTAGGTTGGGGTCAGTTTGGTGTGAT 397 Query 423 AAGAGTATGTTCTGATAAGTTAACTGGAGAGAGGCTTGCTTGTAAGTCTATATCTAAAGA 482 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 398 AAGAGTATGTTCTGATAAGTTAACAGGAGAGAGGCTTGCTTGTAAGTCTATATCTAAAGA 457 Query 483 CAGACTGGTAACACAAGATGACATGAAGAGTATCAAACTCGAGATTGCGATAATGGCCAA 542 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 458 CAGATTGGTAACACAAGATGACATGAAGAGTATCAAACTCGAGATTGCGATTATGGCCAA 517 Query 543 GTTAGCTGGGCACCCAAATGTGGTGAATCTCAAAGCAGTTTACGAGGAGAAAGATTCTGT 602 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 518 GTTAGCTGGGCACCCAAATGTGGTGAATCTCAAAGCAGTTTATGAGGAGAAAGATTATGT 577 Query 603 GCATCTTGTGATGGAACTATGCGCAGGCGGTGAGCTTTTTCACAAGCTCGAGAAATATGG 662 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 578 GCATCTTGTGATGGAACTATGCGCAGGCGGTGAGCTTTTTCACAAGCTTGAGAAATATGG 637 Query 663 AAGGTATTCTGAGGTTCGTGCTAGGGTGCTCTTCAAGCACTTGATGCAAGTGGTCAAGTT 722 ||||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 638 AAGGTATTCAGAGTTTCGTGCTAGGGTACTCTTCAAGCATTTGATGCAAGTGGTCAAGTT 697 Query 723 TTGTCATGATAGCGGTATTGTTCACAGAGATTTGAAACCGGAAAACATTCTTATGGCCAC 782 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 698 TTGTCACGATAGCGGTATTGTTCACAGAGATTTGAAACCGGAAAACATTCTTATGGCCAC 757 Query 783 AATGTCTTCTTCGTCTCCTATCAAATTGGCTGATTTTGGACTGGCAACCTATATAAAGCC 842 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 AATGTCTTCTTCATCTCCTATCAAATTGGCTGATTTTGGACTGGCAACCTATATAAAGCC 817 Query 843 TGGCGAAAAGCTGAGCGGAACAGTTGGTAGTCCGTTTTATATAGCCCCGGAAGTGTTAGC 902 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 818 TGGCGAAAAGCTGAGCGGAACAGTTGGTAGTCCGTTTTATATAGCCCCTGAAGTGTTATC 877 Query 903 AGGGGGATATAACCAAGCTGCTGATGTATGGAGTGCAGGGGTTATTTTGTATATTCTTCT 962 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 878 AGGGGGATATAACCAAGCTGCTGATGTATGGAGTGCAGGGGTTATTTTGTACATTCTTCT 937 Query 963 CAGTGGAGCGCCGCCCTTTTGGGGAAAGACTAAGTCAAAGATTTTTGATGCTGTCAGGGC 1022 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 938 CAGTGGAGTGCCTCCCTTTTGGGGAAAGACTAAGTCAAAGATTTTTGATGCTGTCAGGGC 997 Query 1023 TGCCGATTTGAGATTTTCTGCAGAGCCATGGGACAATATAACTTCATACGCCAAGGATTT 1082 ||| |||||||||||||||||||||||||||||| ||||||||||||| || |||||||| Sbjct 998 TGCAGATTTGAGATTTTCTGCAGAGCCATGGGACCATATAACTTCATATGCTAAGGATTT 1057 Query 1083 GATTCGCGGGATGCTTTGTGTGGATCCTTCCCAAAGGTTATCAGCTGACGAAGTTCTAGC 1142 ||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || Sbjct 1058 GATCCGCGGGATGCTTTGTGTTGATCCTTCCCAAAGATTATCAGCTGATGAAGTTCTGGC 1117 Query 1143 TCACTCTTGGATGGAGCAGTTATCTGAATCAGGTCAAGAACAATATGATCAGGATGGGTT 1202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1118 TCACTCTTGGATGGAGCAGTTATCTGAATCAGGTCAAGAACAATATGATCAGGATGGGTT 1177 Query 1203 TGGTTGTGAAGGATTGGAGAATGGGGGATGTTCTTTCTCCACACAATGCGTTTCTCGGGA 1262 |||||||||||||||||| |||||||| |||||||| ||||| |||||| ||||||| || Sbjct 1178 TGGTTGTGAAGGATTGGATAATGGGGGTTGTTCTTTTTCCACCCAATGCATTTCTCGCGA 1237 Query 1263 ACAAGACTATAGCTTTAGCGTTGGCCAGTTAGAGCAATCAACAGATAACGATTTTAAATC 1322 |||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||| Sbjct 1238 ACAAGACTATAGCTTTAGTGTTGGTCAGTTAGAGCAATCAACAGATAACGAGTGTAAATC 1297 Query 1323 ATCGTTCTCGACATTCCTACCTGCGGATAACACACTGCCAAATTCCGGTTTTGATGGGTT 1382 |||||||||| | |||||||||| |||| | |||||||||||||||||||||| |||||| Sbjct 1298 ATCGTTCTCGTCTTTCCTACCTGTGGATGATACACTGCCAAATTCCGGTTTTGGTGGGTT 1357 Query 1383 TTCTTTTGATGGGAAACAACCGGAATCAACCACAGCTGGCTTCTCATCAACTGGAATTCC 1442 |||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct 1358 TTCTTTTGATGGAAAACAACCGGAATCAACCTCAGCTTGCTTCACATCAACTGGAATTCC 1417 Query 1443 CTCTATGCCAAGCTTTACCtttttttGTACAAGCCCAGCAAGGACACAGAACAACGACAT 1502 ||||||||||||||||||||||||| || ||| |||||| | ||||||||||||| |||| Sbjct 1418 CTCTATGCCAAGCTTTACCTTTTTTAGTCCAATCCCAGCGACGACACAGAACAACAACAT 1477 Query 1503 AA-CTGAAATAGATGGAAAAGTTCGAGACTCAAGCCCAAAGAGGTTACTGCCTTCACCAG 1561 || | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1478 AAGC-GAAACAGATGGAAAAGTTCGAGACTCAAGCCCAAAGAGGTTACTGCCTTCACCAG 1536 Query 1562 ATTCTTCTTCACAACTTGAGAGGCGTGATGAAGCAGGGGAGAATCAGACAGAAGCAGGAG 1621 |||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct 1537 ATTCTTCTTCACAACTTGAGAGACGCGAGGAAGCAGGGGAGAATCAGACAGAAGCAGGAG 1596 Query 1622 GAAAGTCAGAGACAAGAAGGGAAAGAGGAAACTGGTCAAGAATGTCAGGTCTACACAGCA 1681 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1597 GAAAGTCAGAGACAAGAAGGGAAAGAGGAAACTGGTCAAGAATGTCAGGTCTCCACAGCA 1656 Query 1682 AAAGGAACAGAACAATAGGACTAGGCGAGCTAGACCAGTTGGTGGTGGATGTTGCAGTCA 1741 |||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1657 AAAGAAACCGGACCATAGGACTAGGCGAGCTAGACCAGTTGGTGGTGGATGTTGCAGTCA 1716 Query 1742 CAGAGTCGATAATCAGATGGGCATCTTGCACGCATATTCCCACCGCTCCATCTCTCAGAT 1801 ||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct 1717 CAGCGTCGATAATCAGATGGGCATCTTGCACCCATATTCCCACGGCTCCATCCCTCAGAT 1776 Query 1802 TGTCGCTCGTCTGCTAGAAGAAGAAAACGAAGAAGACAACTGTTATCAGTAAAATATTGT 1861 ||||||||||||||||||| | || | || | ||||||||||| ||||| | Sbjct 1777 TGTCGCTCGTCTGCTAGAA-A-GA---C-AA-----C---TGTTATCAGTATAATATA-T 1821 Query 1862 ATGTACACATCTGATTTTGTCCCTGCAATGTCTTTGTTTTTGTAGTAAAACTTTTCCATG 1921 ||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| Sbjct 1822 -TGTACACATCTGATTTTGTTCGTGCAATGTCTTTGTTTTTGTAGTAAAACATTTCCATG 1880 Query 1922 GAAACTGACCTCAAC-TGTATAAACCAA-CGGAAATAGAGTGTGATTTTGATC 1972 ||||||||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct 1881 GAAACTGACCTCAACCTGTATAAACCAAGCGGAAATAGAGTGTGATTTTGATC 1933 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74123616770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5