BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12680.1 Length=1933 Score E Sequences producing significant alignments: (Bits) Value Ahg471419 jgi|Araly1|471419|fgenesh2_kg.1__1373__AT1G12680.1 3142 0.0 > Ahg471419 jgi|Araly1|471419|fgenesh2_kg.1__1373__AT1G12680.1 Length=1929 Score = 3142 bits (1701), Expect = 0.0 Identities = 1859/1934 (96%), Gaps = 16/1934 (1%) Strand=Plus/Plus Query 10 TCTATCTGCATGATTTGGGCTTAGCTTTTTCGTCCCCAAATATTGCGCTTCATCGAGATT 69 |||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||||| Sbjct 1 TCTATCTGCATGATTTGGGCGTAGCTTTTTCTTCCCCAAATA-T-CGCTTCATCGAGATT 58 Query 70 GCTAGGGTTTCTCCTCTTCGATCTTCGCTGCTCATCAACATCTATTGATTCAATTTTCGT 129 ||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||| Sbjct 59 GCTAGGGTTTCTCCTCTTCGATCTTCGCTGCGCATCAACATCTATTGGTTCGA-TTTCGT 117 Query 130 GCTATTGTTTCCCTCTCTGATTTCTTAATCGGAAATTTCGTCTCGATTCGATTCATTAGG 189 ||| || |||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 118 GCTGTTATTTCCCTCTCTGATTTATTGATCGGAAATTTCGTCTCGATTCGATTCATTAGG 177 Query 190 TTCCATCACTCTTTTCTGATCGGTGAAAGGAGGAGAAGA-CCTGTTGTTTTCTTATGTAA 248 ||||||||||||| ||||||||||||||||||||||||| || ||| ||||||||||||| Sbjct 178 TTCCATCACTCTTCTCTGATCGGTGAAAGGAGGAGAAGATCC-GTTATTTTCTTATGTAA 236 Query 249 GTGATTCTGATATTCGTTATCTGTTGGCTGGTTTGATGAGGAAGAAGCGGAAAGGTAGTG 308 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 GTGAGTCTGATATTCGTTATCTGTTGGCTGGTTTGATGAGGAAGAAGCGGAAAGGTAGTG 296 Query 309 AAACTGAGGGTTGGGAGAATTTACCAGATGATTTATCATGTTCAACTGCATCACGATCAT 368 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 297 AAACTGAGGGTTGGGAGAATTTACCAGAGGATTTATTATGTTCAACTGCATCACGATCAT 356 Query 369 CCAACTTCAGGTCGCACTTTTCACTAGAGGGTTATGCTAGACTTAAGAAACGGTGTAAGG 428 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 357 CCAACTTTAGGTCGCACTTTTCACTAGAGGGTTATGCTAGACTTAAGAAGCGGTGTAAGG 416 Query 429 AGACTGAAGCTGTCGAGTCTGTTGGTTCCTTTAAGAGACGAATTGCTGGTGTTGCTACTG 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 AGACTGAAGCTGTCGAGTCTGTTGGTTCCTTTAAGAGACGAATTGCTGGTGTTGCTACTG 476 Query 489 CACCTCCTTGTGGTGCATCATCTTTGGTTTCGTCAGGAAGAGGTTTGAAGAGGAAGATAG 548 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 477 CACCTCCTTGTGGTGCATCATCTTTGGTTTCATCAGGAAGAGGTTTGAAGAGGAAGATAG 536 Query 549 GGTGCATAGATGTTTCCACACAGACTGGTAGGAAGAATAAAATAGACGATGACTATGTTT 608 ||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| Sbjct 537 GGTGCATAGATGTTTCCACGCAGACTGGTAGGAAGAATAAGATAGGCGATGACTATGTTT 596 Query 609 TTGGTCGAAATATTGGGAAAGGGAAATTTGGGTCAGTCAGGATCTGTAAGTCTAGGAAGA 668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 TTGGTCGAAATATTGGGAAAGGGAAATTTGGGTCAGTCAGGATCTGTAAGTCTAGGAAGA 656 Query 669 ATGGGACTGAGTTTGCTTGTAAAACTCTGAAGAAGGGGGAGGAGACTGTTCACCGGGAAG 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 ATGGGACTGAGTTTGCTTGTAAAACTCTGAAGAAGGGGGAGGAGACTGTTCACCGGGAAG 716 Query 729 TTGAGATAATGCAACATTTGTCTGGTCATCCTCGGGTTGTCACATTGCATGCTGTGTATG 788 ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| Sbjct 717 TTGAGATAATGCAACATTTATCTGGTCATCCTCGGGTTGTCACGTTGCATGCTGTATATG 776 Query 789 AAGAGTCAGACTGTTTCCATCTTGTGATGGAGCTGTGTTCAGGGGGACGTTTGATTGATC 848 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 AAGAGTCAGACTCTTTCCATCTTGTGATGGAGCTGTGTTCAGGGGGACGTTTGATTGATC 836 Query 849 AGATGGTAAAGGTGGGCAGGTATTCTGAGCAACGAGCAGCTAATATATTCAAGGACCTTA 908 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 837 AGATGGTAAAGGTGGGCAGGTATTCTGAGCAGCGAGCAGCTAATATATTCAAGGACCTCA 896 Query 909 TGCTAGTGATCAATTATTGCCATGAGATGGGAGTTGTGCATAGAGATATAAAACCTGAGA 968 ||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| |||| Sbjct 897 TGCTAGTCATCAATTATTGCCACGAGATGGGAGTTGTGCACAGAGACATAAAACCAGAGA 956 Query 969 ATATTCTCCTAACAGCTGCTGGGAAGATACAGCTGGCTGATTTTGGCCTCGCCATGAGAA 1028 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 957 ATATTCTACTAACAGCTGCTGGGAAGATACAGCTAGCTGATTTTGGCCTCGCCATGAGAA 1016 Query 1029 TTGCAAAAGGTCAAACACTGTCAGGATTGGCAGGAAGTCCTGCTTATGTTGCACCTGAAG 1088 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 TTGCAAAAGGTCAAACACTGTCAGGATTGGCAGGAAGTCCTGCTTATGTTGCACCTGAAG 1076 Query 1089 TTCTTTCCGAAAATTATTCAGAGAAGGTTGACGTTTGGAGTGCAGGTGTCCTCTTATACG 1148 ||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||| | Sbjct 1077 TTCTTTCTGAAAATTATTCAGAGAAGGTCGACATTTGGAGTGCAGGTGTCCTATTATATG 1136 Query 1149 CTCTCTTGTCTGGTGTACTCCCTTTTAAGGGAGACTCATTGGATGCTATTTTCGAAGCAA 1208 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1137 CTCTCTTGTCTGGTGTACTCCCTTTTAAGGGAGACTCATTGGACGCTATTTTCGAAGCAA 1196 Query 1209 TCAAAAACGTGAAGCTTGATTTCAACACGGGAGTGTGGGAGTCTGTGTCCAAACCTGCCC 1268 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1197 TCAAAAACGTGAAGCTTGATTTCAACTCGGGAGTGTGGGAGTCTGTGTCCAAACCTGCCC 1256 Query 1269 GTGATCTCTTGGCGAGAATGCTAACAAGGGAAGAATCTGCCAGAATCACAGCGGATGAAG 1328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 GTGATCTCTTGGCGAGAATGCTAACAAGGGAAGAATCTGCCAGAATCACAGCGGATGAAG 1316 Query 1329 TGCTAAGGCATCCATGGATACTCTTTTACACAGACCGGACACTCAAGACCATGTGTATCA 1388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 TGCTAAGGCATCCATGGATACTCTTTTACACAGACCGGACACTCAAGACCATGTGTATCA 1376 Query 1389 AGTCGAAGCACAAGAGTCAAGCAGGATCTTCTAC-GTGTCTCCAGAATCGCAGTCCCACA 1447 |||||||||||||||||||||||| |||| || | ||| ||||||||||||||||||||| Sbjct 1377 AGTCGAAGCACAAGAGTCAAGCAGCATCT-CTTCCGTGCCTCCAGAATCGCAGTCCCACA 1435 Query 1448 GAGAAAACTGACCTAAACAGAGCTGACAGGGAAAAGAAGATACCATCTGATTCACCGACT 1507 |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 1436 GAGAAAACTGACCTAAACAGAGCTAACAGAGAAAAGAAGATACCATCTGATTCACCGACT 1495 Query 1508 GATTCATTCTCCAACACAGAGGAGGAAGAAGATGAGAGCGGTGTGGTCGATGTGCTTGTT 1567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1496 GATTCATTCTCCAACACAGAGGAGGAAGAAGATGAGAGCGGTGTGGTCGATGTGCTTGTT 1555 Query 1568 GTTGCAATCGCCAACGTGAGGATCTCAGAACCAAAGAGAAGCAGAGTCTGTAGTCCCACC 1627 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1556 GTTGCAATCTCCAACGTGAGGATCTCAGAACCAAAGAGAAGCAGAGTCTGTAGTCCCACC 1615 Query 1628 AATAACCCCATTGAGCAGCAACACTCTTCTAACTTGACCTCGACTAGTACACTCTGTCGA 1687 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1616 AATAACCCCATTGAGCAGCAACACTCTTCTAACTTGACCTCGACTAATACACTCTGTCGA 1675 Query 1688 GCTTTCTGACAAAACCA--C-A-A-ACGCAGATGGGCATTGTCCAAGCGACAAGCTATGG 1742 || |||||||||||||| | | | ||||| ||||||||||||||||| |||||||| || Sbjct 1676 GCGTTCTGACAAAACCAGACCACACACGCACATGGGCATTGTCCAAGCCACAAGCTACGG 1735 Query 1743 TTTCTCCACGATCTTAGTGACCTTTCTGTTATAATAGTTGG-T--GATATGATTCTGTGT 1799 ||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||| | Sbjct 1736 TTTCTCCACGATCTTAGTGACTTTTCTGTCATAATAGTTGGATTTGATATGATTCTGGGC 1795 Query 1800 TTTTTCCTCTTCTATATCTCTTACTTTGACCATGTACAGATCATGTAAATAGAATATGCT 1859 |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1796 TTTTTCCTCTTCTACATCTCTGACTATGACCATGTACAGATCATGTAAATAGAATATGCT 1855 Query 1860 AAACAAATGATTGATCCGATTT-GGATCGGAGTTATAAGGTGTTGTTTCTAGTCCCTTCA 1918 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 1856 AAACAAATGATTGATCCGATTTTGGATCGGAGTTATAAGGTGTTGTTTCTAGCCCCTTCA 1915 Query 1919 TAAAATTTTGGAAG 1932 |||||||||||||| Sbjct 1916 TAAAATTTTGGAAG 1929 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72638097215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5