BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12820.1
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920146 jgi|Araly1|920146|scaffold_101427.1 2760 0.0
Ahg484456 jgi|Araly1|484456|fgenesh2_kg.5__448__AT3G26810.1 1489 0.0
Ahg911048 jgi|Araly1|911048|Al_scaffold_0001_1302 676 0.0
> Ahg920146 jgi|Araly1|920146|scaffold_101427.1
Length=1774
Score = 2760 bits (1494), Expect = 0.0
Identities = 1673/1760 (95%), Gaps = 10/1760 (1%)
Strand=Plus/Plus
Query 361 CAATCAATAGAGGAAGATGAATTATTTCCCAGACGAGGTTATAGAGCACGTGTTTGACTT 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 CAATCGATAGAGGAAGATGAATTATTTCCCAGACGAGGTTATAGAGCACGTGTTTGACTT 64
Query 421 CGTAGCTTCTCACAAAGACAGGAACTCGATATCTCTGGTCTGCAAATCATGGCACAAGAT 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 65 CGTAGCTTCTCACAAAGACAGGAACTCGATCTCTCTGGTCTGCAAATCATGGCACAAGAT 124
Query 481 CGAGAGGTTTAGTAGGAAGGAA-GTGTTCATCGGAAACTGCTACGCGATTAACCCGGAGA 539
|||||||||||||||||| ||| ||||||||||||||||||||||| || || || ||||
Sbjct 125 CGAGAGGTTTAGTAGGAA-GAACGTGTTCATCGGAAACTGCTACGCCATCAATCCAGAGA 183
Query 540 GGTTGATCAGGAGGTTTCCATGTCTCAAATCCTTAACT-TTAAAAGGGAAGCCTCATTTT 598
| || ||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 184 GATTAATCGGGAGGTTTCCATGTCTCAAATCCTTAACTCTT-AAAGGGAAGCCTCATTTC 242
Query 599 GCAGACTTCAACTTGGTTCCTCATGAATGGGGAGGTTTCGTGCATCCTTGGATTGAAGCT 658
|| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 243 GCTGATTTCAACTTGGTTCCTCATGAATGGGGAGGTTTCGTGCTTCCTTGGATTGAAGCT 302
Query 659 TTGGCTAGAAGCCGTGT-GGGACTTGAGGAGCTGAGGTTGAAGCGGATGGTTGTAACAGA 717
|||||||| |||||||| ||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 303 TTGGCTAGGAGCCGTGTAGGG-CTTGAGGAGCTGAGGTTGAAGCGAATGGTGGTAACAGA 361
Query 718 TGAAAGCTTGGACCTTCTTTCACGTTCTTTTGCAAATTTCAAGTCTTTGGTTCTTGTTAG 777
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 TGAAAGCTTGGAGCTTCTTTCACGTTCTTTTGCAAATTTCAAGTCTTTGGTTCTTGTCAG 421
Query 778 CTGTGAAGGGTTTACCACTGATGGCTTAGCTTCCATTGCCGCTAATTGCAGGCATCTTCG 837
||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 422 CTGTGAAGGATTTACCACTGACGGCTTAGCTTCCATTGCTACTAATTGCAGGCATCTTCG 481
Query 838 TGAGCTGGACT-TGCAAGAGAATGAGATTGATGATCATAGAGGTCAATGGCTGAACTGTT 896
||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 482 TGAGCTGGA-TCTGCAAGAGAATGAAATTGATGATCATAGAGGTCAATGGCTGAACTGTT 540
Query 897 TTCCAGATAGCTGCACTACTCTTATGTCGTTGAATTTCGCTTGCCTTAAAGGAGAGACCA 956
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 541 TTCCAGATAGCTGCACTACTCTTATCTCGTTGAATTTCGCCTGTCTTAAAGGAGAGACCA 600
Query 957 ATGTTGCTGCTTTAGAAAGGCTTGTTGCTAGGTCACCAAACCTGAAGAGCTTGAAGTTAA 1016
|||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||
Sbjct 601 ATGTTGCTGCTTTAGAGAGGCTTGTTGCAAGGTCACCGAATCTGAAGAGCTTGAAGTTAA 660
Query 1017 ACCGTGCAGTACCGCTTGACGCACTCGCAAGGTTAATGAGTTGTGCGCCGCAGCTAGTGG 1076
||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 661 ACCGTGCAGTACCGCTTGACGCACTTGCTAGGTTAATGAGTTGTGCGCCGCAGTTAGTGG 720
Query 1077 ACTTAGGAGTAGGGTCTTATGAGAATGAGCCAGATCCTGAATCTTTTGCAAAACTCATGA 1136
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 721 ACTTAGGAGTAGGGTCTTATGAGAATGAGCCAGATCCAGAATCTTTTGCGAAACTCATGA 780
Query 1137 CTGCCATT-AAGAAATACACATCGTTAAGGAGCTTGTCTGGCTTTTTAGAGGTTGCTCCA 1195
|||||||| || |||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct 781 CTGCCATTGAA-AAATGCATATCGTTAAGGAGCTTGTCAGGCTTTTTAGAGGTTGCTCCA 839
Query 1196 CTCTGCCTCCCAGCGTTCTACCCAATTTGCCAAAACCTTATCTCTTTGAACCTCAGCTAT 1255
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 840 CTCTGCCTCCCAGCGTTCTACCCGATTTGTCAAAACCTTATCTCGTTGAACCTCAGCTAT 899
Query 1256 GCAGCTGAAATCCAAGGCAACCACCTCATTAAGCTTATTCAGCTTTGCAAGAGACTTCAA 1315
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCAGCCGAGATCCAAGGCAACCACCTCATTAAGCTTATTCAGCTTTGCAAGAGACTTCAA 959
Query 1316 CGATTATGGATATTGGATAGTATTGGTGACAAAGGACTTGCGGTTGTCGCTGCCACATGT 1375
|| || |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 960 CGGTTGTGGATATTGGATAGTATTGGTGACAAAGGACTTGTGGTCGTCGCTGACACATGC 1019
Query 1376 AAAGAGTTACAAGAGCTTAGAGTTTTTCCCTCTGATGTACATGGTGAAGAAGATAACAAC 1435
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 AAAGAGTTACAAGAGCTGAGAGTTTTTCCCTCCGATGTACATGGTGAAGAAGATAACATT 1079
Query 1436 GCATCTGTGACTGAGGTTGGACTAGTCGCCATTTCCGCAGGTTGCCCTAAACTTCATTCG 1495
||| ||||||||||||| || ||||| || ||||| ||||||||||||||||||||||||
Sbjct 1080 GCAGCTGTGACTGAGGTCGGTCTAGTTGCAATTTCTGCAGGTTGCCCTAAACTTCATTCG 1139
Query 1496 ATTCTGTACTTCTGCAAACAGATGACAAACGCAGCGCTCATAGCCGTGGCCAAAAACTGT 1555
||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1140 ATTCTATACTTCTGCAAACAAATGACAAATGCAGCGCTCATAGCCGTGGCCAAAAACTGC 1199
Query 1556 CCAAACTTCATCCGGTTCAGGCTATGCATTCTCGAGCCACACAAACCTGACCACATTACA 1615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1200 CCAAACTTCATCCGGTTCAGGCTATGCATTCTCGAGCCACACAAACCTGACCACATCACA 1259
Query 1616 TTTCAATCACTGGACGAGGGCTTTGGTGCAATCGTACAAGCTTGCAAGGGTCTAAGACGG 1675
| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 TCTCAATCACTAGACGAAGGCTTTGGTGCGATCGTACAAGCTTGCAAGGGTCTAAGACGA 1319
Query 1676 CTCTCTGTCTCCGGTCTCTTAACCGATCAAGTCTTTCTCTACATCGGTATGTACGCGGAA 1735
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1320 CTCTCTGTCTCCGGTCTCTTAACCGACCAAGTCTTTCTTTACATCGGTATGTACGCGGAG 1379
Query 1736 CAGCTCGAGATGCTTTCGATAGCTTTTGCGGGGGACACTGACAAAGGAATGCTCTATGTG 1795
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CAGCTCGAGATGCTTTCAATAGCTTTTGCGGGGGACACTGACAAAGGAATGCTCTATGTG 1439
Query 1796 TTGAATGGATGCaaaaaaaTGAGGAAGCTGGAGATAAGGGACAGTCCTTTTGGGAACGCT 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TTGAATGGATGCAAAAAAATGAGGAAGCTGGAGATAAGGGACAGTCCTTTTGGGAACGCT 1499
Query 1856 GCGCTTCTTGCTGACGTGGGTAGGTACGAAACAATGCGATCCCTTTGGATGTCGTCTTGT 1915
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1500 GCGCTTCTTGCTGACGTGGGTAGGTACGAGACAATGCGATCCCTTTGGATGTCGTCTTGT 1559
Query 1916 GAAGTAACACTCGGTGGCTGCAAGAGGCTCGCGCAGAATTCGCCACGGCTTAACGTAGAG 1975
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1560 GAAGTAACACTCGGTGGCTGCAAGAGGCTCGCGCAGAATTCGCCACGGCTCAACGTAGAG 1619
Query 1976 ATCATCAACGAGAATGAGAATAATGGGATGGAACAGAATGAAGAAGATGAAAGAGAGAAG 2035
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1620 ATCATCAACGAGAATGAGAATAATCGGATGGAACAGAATGAAGAAGACGAAAGAGAGAAG 1679
Query 2036 GTTGATAAACTTTACCTCTACCGAACAGTGGTTGGGACTAGAAAAGATGCACCACCATAT 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GTTGATAAACTTTACCTCTACCGAACAGTGGTTGGGACTAGAAAAGATGCACCACCATAT 1739
Query 2096 GTTAGGATTCTTTAGTCTCT 2115
||||||||||||||||||||
Sbjct 1740 GTTAGGATTCTTTAGTCTCT 1759
> Ahg484456 jgi|Araly1|484456|fgenesh2_kg.5__448__AT3G26810.1
Length=2352
Score = 1489 bits (806), Expect = 0.0
Identities = 1456/1767 (82%), Gaps = 55/1767 (3%)
Strand=Plus/Plus
Query 375 AGATGAATTATTTCCCAGACGAGGTTATAGAGCACGTGTTTGACTTCG-TAGCTTCTCAC 433
||||||||||||||||||| || || ||||||||||| || ||||||| || | || |||
Sbjct 466 AGATGAATTATTTCCCAGATGAAGTAATAGAGCACGTATTCGACTTCGTTA-CATCCCAC 524
Query 434 AAAGACAGGAACT-CGATATCTCTGGTCTGCAAATCATGGCACAAGATCGAGAGGTTTAG 492
||||||||||| | | |||||||| || |||||||||||| |||||||||||| | ||
Sbjct 525 AAAGACAGGAA-TGCTATATCTCTTGTATGCAAATCATGGTTCAAGATCGAGAGATACAG 583
Query 493 TAGG-AAGGAA-GTGTTCATCGGAAACTGCTACGCGATTAACCCGGAGAGGTTG-ATCAG 549
|||| || || || ||||| |||||||| || || ||||| || ||||||||| || |
Sbjct 584 TAGGCAA--AAGGTTTTCATTGGAAACTGTTATGCCATTAATCCAGAGAGGTTGCTTC-G 640
Query 550 GAGGTTTCCATGTCTCAAA-TCCTTAACTTTAAAAGGGAAGCCTCATTTTGCAGACTTCA 608
||| || |||||||| ||| || || ||||| ||||| || ||||||||||| || ||||
Sbjct 641 GAGATTCCCATGTCT-AAAGTCTTTGACTTTGAAAGGAAAACCTCATTTTGCGGATTTCA 699
Query 609 ACTTGGTTCCTCATGAATGGGGAGGTTTCGTGCAT-CCTTGGATTGAAGCTTTGGCTAGA 667
| |||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||
Sbjct 700 ATTTGGTTCCTCATGAATGGGGAGGTTTTTTGC-TACCTTGGATTGAAGCTTTAGCTAGA 758
Query 668 AGCCGTGTGGGACTTGAGGAGCTGAGGTTGAAGCGGATGGTTGTAACAGATGAAAG-CTT 726
|| ||||| |||||||||||||| ||||||||| |||||||||| || ||||| || |||
Sbjct 759 AGTCGTGTAGGACTTGAGGAGCTTAGGTTGAAGAGGATGGTTGTTACTGATGAGAGTCTT 818
Query 727 GGACCTTCTTTCACGTTCTTTTGCAAATTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGG 786
|| || ||||| |||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 819 -GAGCTGCTTTCTCGTTCTTTTGTGAATTTTAAGTCTTTGGTGCTTGTTAGCTGTGAAGG 877
Query 787 GTTTACCACTGATGG-CTTAGCTTCCATTGCCGCTAATTGCAGGCATCTTCGTGAGCTGG 845
||||| |||||||| ||| || || |||||||||||||||||||||||||| || || |
Sbjct 878 TTTTACTACTGATGGTCTT-GCCTCTATTGCCGCTAATTGCAGGCATCTTCGAGATCTTG 936
Query 846 ACTTGCAAGAGAATGAGATTGATGATCATAGAGGTCAATGGCTGAA-CTGTTTTCCAGAT 904
|||||||||||||||| || ||||||||||||||||||||| | || ||||| || ||
Sbjct 937 ACTTGCAAGAGAATGAAATCGATGATCATAGAGGTCAATGG-TTAAGTTGTTTCCCCGAC 995
Query 905 AGC-TGCACTACTCTTATGTCG-TTGAA-TTTCGCTTGCCTTAAAGGAGAGACCAATGTT 961
| | || || || ||| | || || || ||| || || ||| ||||||| || ||| |
Sbjct 996 A-CTTGTACGACCCTTGTCACGCTT-AACTTT-GCGTGTCTTGAAGGAGAAACAAATCTG 1052
Query 962 GCTGCTTTAGAAAGGCTTGTTGCTAGGTCACCAAACCTGAAGAGCT-TGAAGTTAAACCG 1020
| |||| |||| ||||||||||||||||| |||||||| ||||| | ||||| |||||||
Sbjct 1053 GTTGCTCTAGAGAGGCTTGTTGCTAGGTCTCCAAACCTAAAGAG-TCTGAAGCTAAACCG 1111
Query 1021 TGCAGTACCGCTTGACGCACTCGCAAGGTTAATGAGT-TGTGCGCCGCAGCTAGTGGACT 1079
|||||| ||||| || ||||| |||||||||||| || |||||||||||| |||| || |
Sbjct 1112 TGCAGTGCCGCTAGATGCACTGGCAAGGTTAATG-GTGTGTGCGCCGCAGATAGTTGATT 1170
Query 1080 TAGGAGTAGGGTCTTATGAGAATGAGCCAGATCCTGAATCTTTTGC-AAAACTCATGACT 1138
||||||||||||||||||||||||| |||||| | || || || | ||||||| | ||
Sbjct 1171 TAGGAGTAGGGTCTTATGAGAATGACCCAGATTCAGAGTC-TTACCTGAAACTCAAGGCT 1229
Query 1139 GCCATTAAGAAATACACATCGTTAAGGAGCTTGTCTGGCTTTT-TAGAGGTTGCTCCACT 1197
|| || ||||||| ||| ||||||||||| ||||| || |||| |||| | ||| || |
Sbjct 1230 GCTATAAAGAAATGCACCTCGTTAAGGAGTTTGTC-GGGTTTTCTAGAAGCTGCGCCTCA 1288
Query 1198 CTGCCTCCCAGCGTTCTACCCAATTTGCCAAAACCTTATCTCTTTGAACCTCAGCTATGC 1257
||| ||| |||| ||| ||||||| || || ||||||| ||| ||||| || || |||||
Sbjct 1289 CTGTCTCTCAGCTTTCCACCCAATATGTCATAACCTTACCTCCTTGAATCTTAGTTATGC 1348
Query 1258 AGCTGAAATCCAAGGCAACCACCTCATTAAGCTTATTCAGCTTTGCAAGAGACTTCAACG 1317
|||||| || || |||| ||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 1349 AGCTGAGATTCATGGCAGCCACCTCATTAAGCTTATTCAGCATTGCAAGAAACTTCAGCG 1408
Query 1318 ATTATGGATATTGGATAGTATTGGTGACAAAGGACTTGCGGTTGTCGCTGCCACATGTAA 1377
|||||||||||||||||||| ||||||||||| |||| ||||| ||| | ||||||||
Sbjct 1409 GTTATGGATATTGGATAGTATAGGTGACAAAGGGCTTGAAGTTGTAGCTTCTACATGTAA 1468
Query 1378 AGAGTTACAAGAGCTTAGAGTTTTTCCCTCTGATGTACATGGTGAAGAAGATAACAACGC 1437
||||||||||||||||||||||||||| |||||| ||| ||||| || | |||| |
Sbjct 1469 AGAGTTACAAGAGCTTAGAGTTTTTCCATCTGATTTACTTGGTGGAG--GC-AACA-C-- 1522
Query 1438 ATCTGTGACTGAGGTTGGACTAGTCGCCATTTCCGCAGGTTGCCCTAAACTTCATTCGAT 1497
| ||||||| || | || ||||| ||||| ||||| || |||||||| ||||| |||||
Sbjct 1523 AGCTGTGACCGAAGAAGGTCTAGTTGCCATCTCCGCGGGCTGCCCTAAGCTTCACTCGAT 1582
Query 1498 TCTGTACTTCTGCAAACAGATGACAAACGCAGCGCTCATAGCCGTGGCCAAAAACTGTCC 1557
|| ||||||||| | ||||||||||||||||| ||| || |||| ||||| ||||||||
Sbjct 1583 ACTCTACTTCTGCCAGCAGATGACAAACGCAGCTCTCGTAACCGTTGCCAAGAACTGTCC 1642
Query 1558 AAACTTCATCCGGTTCAGGCTATGCATTCTCGAGCCACAC-AAACCTGACCACATTACAT 1616
||| ||||||||||| || || ||||| || || ||| || ||||| || ||| | ||||
Sbjct 1643 AAATTTCATCCGGTTTAGACTCTGCATCCTGGATCCA-ACCAAACCCGATCACGTGACAT 1701
Query 1617 TTCAATCACTGGACGAGGGCTTTGGTGCAATCGTACAA-GCTTGCAAGGGTCTAAGACGG 1675
|||| | | ||||| || ||||| |||||||| ||| || |||||| | || ||||||
Sbjct 1702 CTCAACCTTTAGACGAAGGATTTGGAGCAATCGT-CAAAGCCTGCAAGAGCCTGAGACGG 1760
Query 1676 CTCTCTGTCTCCGGTCTCTTAACCGATCAAGTCTTTCTCTACATCGGTATGTACGCGGAA 1735
|| || |||| |||||| | || || |||||||| ||||||||||| ||||||||| ||
Sbjct 1761 CTATCCCTCTCAGGTCTCCTCACAGACCAAGTCTTCCTCTACATCGGGATGTACGCG-AA 1819
Query 1736 -CAGCTCGAGATGCTTTCGATAGCTTTTGCGGGGGACACTGACAAAGGAATGCTCTATGT 1794
|||||||||||||| || |||||||| || ||||| || |||||||| ||||| |||||
Sbjct 1820 TCAGCTCGAGATGCTCTCAATAGCTTTCGCAGGGGATACAGACAAAGGCATGCTTTATGT 1879
Query 1795 GTTGAATGGATGCaaaaaaaTGAGGAAGCTGGAGATAAGGGACAGTCCTTTTGG-GA-AC 1852
||||||||| |||||||| |||| ||||| ||||| |||| ||||| ||||| || ||
Sbjct 1880 GTTGAATGGTTGCAAAAAGATGAAAAAGCTAGAGATTCGGGATAGTCCGTTTGGCGACAC 1939
Query 1853 GCTGCGCTTCTTGCTGACGTGGGTAGGTACGAAACAATGCGATCCCTTTGGATGTCGTCT 1912
| |||||||||||||| ||| | | |||| ||||||||||||||||||||||||||||
Sbjct 1940 G--GCGCTTCTTGCTGATGTGAGCAAGTACAAAACAATGCGATCCCTTTGGATGTCGTCA 1997
Query 1913 TGTGAAGTAACACTCGGTGGCTGCAAGAGGCTCGCGCAGAATTCGCCACGGCTTAACGTA 1972
|||||||| |||||| | || ||||| |||||||| ||||| ||||| |||| || |||
Sbjct 1998 TGTGAAGTCACACTCAGCGGATGCAAAAGGCTCGCACAGAAAGCGCCATGGCTCAATGTA 2057
Query 1973 GAGATCATCAACGAGAATGAGAATAATGGGATGGAACAGAATGAAGAAGATGAAAGAGAG 2032
|||||||| ||||||||||| ||||| ||||||| | || | | | || | |||| ||
Sbjct 2058 GAGATCATAAACGAGAATGATAATAACCGGATGGAGGAAAACGGACACGAAGGAAGACAG 2117
Query 2033 AAGGTTGATAAACTT-TACCTCTACCGAACAGTGGTTGGGACTAGAAAAGATGCACCACC 2091
|| ||||||||| || || ||||| || || ||||||||||| |||| ||||| || ||
Sbjct 2118 AAAGTTGATAAA-TTGTATCTCTATCGCACTGTGGTTGGGACAAGAATGGATGCGCCGCC 2176
Query 2092 ATATGT-TAGGATTCTTTAGTCTCTTT 2117
|| ||| | ||||||| ||||| ||||
Sbjct 2177 ATTTGTGT-GGATTCTCTAGTC-CTTT 2201
> Ahg911048 jgi|Araly1|911048|Al_scaffold_0001_1302
Length=462
Score = 676 bits (366), Expect = 0.0
Identities = 414/437 (95%), Gaps = 4/437 (1%)
Strand=Plus/Plus
Query 377 ATGAATTATTTCCCAGACGAGGTTATAGAGCACGTGTTTGACTTCGTAGCTTCTCACAAA 436
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTATTTCCCAGACGAGGTCATAGAGCACGTGTTTGACTTCGTAGCTTCTCACAAA 60
Query 437 GACAGGAACTCGATATCTCTGGTCTGCAAATCATGGCACAAGATCGAGAGGTTTAGTAGG 496
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACAGGAACTCGATCTCTCTGGTCTGCAAATCATGGCACAAGATCGAGAGGTTTAGTAGG 120
Query 497 AAGGAA-GTGTTCATCGGAAACTGCTACGCGATTAACCCGGAGAGGTTGATCAGGAGGTT 555
||| || ||||||||||||||||||||||| || || || ||||| || ||| |||||||
Sbjct 121 AAG-AACGTGTTCATCGGAAACTGCTACGCCATCAATCCAGAGAGATTAATCGGGAGGTT 179
Query 556 TCCATGTCTCAAATCCTTAACT-TTAAAAGGGAAGCCTCATTTTGCAGACTTCAACTTGG 614
|||||||||||||||||||||| ||||| |||||||||||||| || || ||||||||||
Sbjct 180 TCCATGTCTCAAATCCTTAACTCTTAAA-GGGAAGCCTCATTTCGCTGATTTCAACTTGG 238
Query 615 TTCCTCATGAATGGGGAGGTTTCGTGCATCCTTGGATTGAAGCTTTGGCTAGAAGCCGTG 674
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 239 TTCCTCATGAATGGGGAGGTTTCGTGCTTCCTTGGATTGAAGCTTTGGCTAGGAGCCGTG 298
Query 675 TGGGACTTGAGGAGCTGAGGTTGAAGCGGATGGTTGTAACAGATGAAAGCTTGGACCTTC 734
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 299 TGGGACTTGAGGAGCTGAGGTTGAAGCGGATGGTGGTAACAGATGAAAGCTTGGAGCTTC 358
Query 735 TTTCACGTTCTTTTGCAAATTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTTACCA 794
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 359 TTTCACGTTCTTTTGCAAATTTCAAGTCTTTGGTTCTTGTCAGCTGTGAAAGGTTTACCA 418
Query 795 CTGATGGCTTAGCTTCC 811
|||| ||||||||||||
Sbjct 419 CTGACGGCTTAGCTTCC 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83912809735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5