BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12990.1 Length=2035 Score E Sequences producing significant alignments: (Bits) Value Ahg920164 jgi|Araly1|920164|scaffold_101445.1 2028 0.0 > Ahg920164 jgi|Araly1|920164|scaffold_101445.1 Length=1221 Score = 2028 bits (1098), Expect = 0.0 Identities = 1180/1220 (97%), Gaps = 4/1220 (0%) Strand=Plus/Plus Query 316 GGTGGATCTGAGT-TTGGGATGTGGTGGATGATGGGAGAAGCTGGTGGGCATTACTGTTC 374 ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 4 GGTGGATCTGA-TACTGGGATGTGGTGGATGATGGGAGAAGCTGGTGGACATTACTGTTC 62 Query 375 TAAGAAGACTGATGATATCTGCGGCGGTGTTTGTAGTCAGGAACCTGGAAGATTCTTCAG 434 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 63 TAAGAAGACTGATGATATCTGCGGTGGTGTTTGTAGTCAGGAACCTGGAAGATTCTTCAG 122 Query 435 CTTTTCTAGACTTTGTTGTGCTCTTCGTGGTGTTGATATGAAGACTTATATCTTCTTATT 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 CTTTTCTAGACTTTGTTGTGCTCTTCGTGGTGTTGATATGAAGACTTATATCTTCTTATT 182 Query 495 AGTGATTGTTCCCACATGTGTACTCGCTGGCTATGTCCACGGTCAGAAGATTTCTTACTT 554 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 183 AGTGATTGTTCCCACATGTGTACTCGCTGGTTATGTCCACGGTCAGAAGATTTCTTACTT 242 Query 555 TCTCCGGCCTTTATGGGAATCACCACCTAAACCTTTTCATGACATTCCTCATTACTACCA 614 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 TCTCCGGCCATTATGGGAATCACCACCTAAACCTTTTCATGACATTCCTCATTACTACCA 302 Query 615 CGAGAACGCTTCTATGGAGACTCTTTGTAAACTCCATGGCTGGGGTGTTCGAGACTACCC 674 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 303 TGAGAATGCTTCTATGGAGACTCTTTGTAAACTCCATGGCTGGGGTGTACGAGAATACCC 362 Query 675 TAGACGAGTTTATGATGCGGTTTTGTTCAGTAACGAGCTTGATATCCTCGCTGTTCGTTG 734 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 363 TAGACGAGTTTATGATGCGGTTTTGTTCAGTAACGAGCTTGATATCCTCGCTGTTCGGTG 422 Query 735 GAGAGAATTGTTTCCTTACATCACTCAGTTTGTCCTCCTTGAATCAAACACGACGTTCAC 794 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 423 GAGAGAATTGTTTCCTTACATCACTCAGTTTGTCCTTCTAGAATCAAACACGACGTTCAC 482 Query 795 TGGCTTGCCTAAGCCTCTTGTCTTTGCTGCTCACCGAGATGAGTTCAAGTTTATTGAGTC 854 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 483 TGGGTTGCCTAAGCCTCTTGTGTTTGCTGCTCACCGAGATGAGTTCAAGTTTATCGAGTC 542 Query 855 ACGCTTGACTTATGGTACTGTTGGTGGAAGATTTGTCAAAGGGCAGAATCCGTTTTACGA 914 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 ACGCTTGACTTATGGTACTGTTGGTGGAAGATTTGTCAAAGGGCAGAATCCGTTTTACGA 602 Query 915 AGAGGCGTATCAGCGGGTAGCTCTTGATCAGCTTCTGAGAATCGCTGGGATTACTGATGA 974 |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 603 AGAGGCTTATCAGCGAGTAGCTCTAGATCAGCTTCTGAGAATCGCTGGGATTACTGATGA 662 Query 975 TGACTTGTTGTTAATGTCTGATGTCGATGAGATTCCAAGTAGACACACCATTAACCTTTT 1034 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 663 TGACTTGTTGTTAATGTCTGATGTTGATGAGATTCCAAGTAGACACACCATTAACCTTTT 722 Query 1035 GAGATGGTGCGATGAGATCCCGAAGATACTTCATCTGCGCCTCAAGAACTATCTTTACTC 1094 || ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 723 AAGGTGGTGCGATGATATCCCGAAGATCCTTCATCTGCGGCTCAAGAACTATCTTTACTC 782 Query 1095 GTTTGAATTCCTTGTTGATAACAAAAGCTGGAGAGCTTCCATCCACAGATATGAGACGGG 1154 ||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 783 GTTCGAATTCCTTGTTGATAACAAGAGCTGGAGAGCTTCCGTCCACAGATATGAGACGGG 842 Query 1155 TAAGACACGGTATGCTCATTATCGACAGTCTGATGAAATCTTGGCGGATGCAGGATGGCA 1214 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 843 TAAGACACGGTATGCTCATTATCGACAGTCGGATGAAATCTTGGCGGATGCAGGATGGCA 902 Query 1215 TTGTAGCTTTTGCTTCCGACGAATCAGTGAGTTTATATTCAAGATGAAAGCTTATAGCCA 1274 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 903 CTGTAGCTTTTGCTTCCGACGGATCAGTGAGTTTATATTCAAGATGAAAGCTTATAGCCA 962 Query 1275 TAATGACAGAGTGAGGTTTGGTCATTTCTTGAATCCTAAGAGAGTTCAAAGAGTTATATG 1334 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 TAATGATAGAGTGAGGTTTGGTCATTTCTTGAATCCTAAGAGAGTTCAAAGAGTTATATG 1022 Query 1335 CAAAGGAGCTGATCTTTTCGATATGCT-CCCTGAAGAGTATACCTTCAAGGAGATAATAG 1393 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1023 CAAAGGAGCTGATCTTTTCGATATGCTTCCC-GAAGAGTATACCTTCAAGGAGATAATAG 1081 Query 1394 GAAAAATGGGTCCAATCCCGCATTCTTTCTCAGCTGTTCATCTTCCTTCGTATCTCCTGG 1453 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1082 GAAAAATGGGTCCAATCCCGCATTCTTTCTCAGCCGTTCATCTTCCTTCGTATCTCCTGG 1141 Query 1454 AAAACGCGGATAAGTACAGATTTCTCTTGCCGGGAAATTGCATAAGAGAAAGCGAATGAT 1513 |||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| Sbjct 1142 AAAACGCGGATAAGTACAGATTCCTCTTACCGGGAAATTGCATAAGAGAAACCGAATGAT 1201 Query 1514 CGTTCGAATCTTCACCACAT 1533 || ||||||||||||||||| Sbjct 1202 CGATCGAATCTTCACCACAT 1221 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76523302205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5