BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13260.1 Length=1575 Score E Sequences producing significant alignments: (Bits) Value Ahg920198 jgi|Araly1|920198|scaffold_101479.1 1775 0.0 Ahg484335 jgi|Araly1|484335|fgenesh2_kg.5__327__AT3G25730.1 667 0.0 Ahg921660 jgi|Araly1|921660|scaffold_102941.1 316 2e-85 > Ahg920198 jgi|Araly1|920198|scaffold_101479.1 Length=1076 Score = 1775 bits (961), Expect = 0.0 Identities = 1037/1074 (97%), Gaps = 4/1074 (0%) Strand=Plus/Plus Query 202 aaaaaaaC-ACAGATTAAATGGAA-TCGAGTAGCGTTGATGAGAGTACTACAAGTACAGG 259 |||||||| | ||||||||||||| | ||||||||| || |||||||||||||||||||| Sbjct 4 AAAAAAACTA-AGATTAAATGGAAGT-GAGTAGCGTAGACGAGAGTACTACAAGTACAGG 61 Query 260 TTCCATCTGTGAAACCCCGGCGATAACTCCGGCGAAAAAGTCGTCGGTAGGTAACTTATA 319 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 62 TTCCATCTGTGAAACTCCGACGATAACTCCGGCGAAAAAGTCGTCGGTAGGTAACTTATA 121 Query 320 CAGGATGGGAAGCGGATCAAGCGTTGTGTTAGATTCAGAGAACGGCGTAGAAGCTGAATC 379 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 122 CAGGATGGGAAGCGGATCAAGCGTGGTGTTAGATTCAGAGAACGGCGTAGAAGCTGAATC 181 Query 380 TAGGAAGCTTCCGTCGTCAAAATACAAAGGTGTGGTGCCACAACCAAACGGAAGATGGGG 439 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 182 TAGGAAGCTTCCGTCATCAAAATACAAAGGTGTGGTGCCGCAACCAAACGGAAGATGGGG 241 Query 440 AGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGGACATTCAACGAAGAAGACGA 499 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 242 AGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGTACATTCAACGAAGAAGACGA 301 Query 500 AGCCGCTCGTGCCTACGACGTCGCGGTTCACAGGTTCCGTCGCCGTGACGCCGTCACAAA 559 ||| |||||| |||||||||| ||||||||| |||||||| | ||||||||||||||||| Sbjct 302 AGCTGCTCGTTCCTACGACGTGGCGGTTCACCGGTTCCGTGGTCGTGACGCCGTCACAAA 361 Query 560 TTTCAAAGACGTGAAGATGGACGAAGACGAGGTCGATTTCTTGAATTCTCATTCGAAATC 619 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 362 TTTTAAAGACGTGAAGATGGACGAAGACGAGGTCGAGTTCTTGAATTCTCATTCGAAATC 421 Query 620 TGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGTTAGAGCAGAGTAAACG 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 TGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGTTAGAGCAGAGTAAACG 481 Query 680 GCGTCGTAATGGTAACGGAAACATGACTAGGACGTTGTTAACGTCGGGGTTGAGTAATGA 739 ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 482 GCGTCGTAACGGTAACGGAAACATGGTTAGGACGATGTTAACGTCGGGGTTGAGTAATGA 541 Query 740 TGGTGTTTCTACGACGGGGTTTAGATCGGCGGAGGCACTGTTTGAGAAAGCGGTAACGCC 799 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 542 TGGTGTTTCGACGACGGAGTTTAGATCGGCGGAGGCACTGTTTGAGAAAGCGGTAACGCC 601 Query 800 AAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGAAACATCACGCAGAGAAACATTT 859 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 602 AAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGAAACATCACGCGGAGAAACACTT 661 Query 860 TCCGTTACCGTCAAGTAACGTTTCCGTGAAAGGAGTGTTGTTGAACTTTGAGGACGTTAA 919 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 662 TCCGTTACCGTCAAGTAACGTTTCCGTGAAAGGAGTGTTGTTGAACTTTGAGGATGTTAA 721 Query 920 CGGGAAAGTGTGGAGGTTCCGTTACTCGTATTGGAACAGTAGTCAGAGTTATGTTTTGAC 979 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 CGGGAAAGTGTGGAGGTTCCGTTACTCGTATTGGAACAGTAGTCAGAGTTATGTTTTGAC 781 Query 980 TAAAGGTTGGAGCAGGTTCGTTAAGGAGAAGAATCTACGTGCTGGTGACGTGGTTAGTTT 1039 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 782 TAAAGGTTGGAGCAGGTTCGTTAAGGAGAAGAATCTACGTGCTGGTGACGTGGTTAGCTT 841 Query 1040 CAGTAGATCTAACGGTCAGGATCAACAGTTGTACATTGGGTGGAAGTCGAGATCCGGGTC 1099 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 CAGTAGATCTAACGGTCAGGATCAACAGTTGTACATTGGGTGGAAGTCGAGATCCGGGTC 901 Query 1100 AGATTTAGATGCGGGTCGGGTTTTGAGATTGTTCGGAGTTAACATTTCACCGGAGAGTTC 1159 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 GGATTTAGAAACGGGTCGGGTTTTGAGATTGTTCGGAGTTAACATTTCACCGGAGAGTTC 961 Query 1160 AAGAAACGACGTCGTAGGAAACAAAAGAGTGAACGATACTGAGATGTTATCGTTGGTGTG 1219 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 962 CAGAAACGACGTCGTAGGGAACAAGAGAGTGAACGATACTGAGATGTTATCGTTGGTGTG 1021 Query 1220 TAGCAAGAAGCAACGCATCTTTCACGCCTCGTAACAACTCTTCTTCtttttttt 1273 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 TAGTAAGAAGCAACGCATCTTTCACGCCTCGTAACAACTCTTCTTCTTTTTTTT 1075 > Ahg484335 jgi|Araly1|484335|fgenesh2_kg.5__327__AT3G25730.1 Length=1176 Score = 667 bits (361), Expect = 0.0 Identities = 692/849 (82%), Gaps = 34/849 (4%) Strand=Plus/Plus Query 316 TATACAGGATGGGAAGCGGATCAAGCGTTG-TGTTAGATTCAGAGAACGGCGTAGAAGCT 374 ||||||| |||||||||||| ||||||| | | || |||||||||||||| || || || Sbjct 160 TATACAGAATGGGAAGCGGAACAAGCGTGGTTCTT-GATTCAGAGAACGGTGTCGAGGCA 218 Query 375 GAATCTAGGAAGCTTCCGTCGTCAAAATACAAAGGTGTGGTGCCACAACCAAACGGAAGA 434 ||||| || |||||||| || |||| || ||||||||| || || |||||||| |||||| Sbjct 219 GAATCAAGAAAGCTTCCTTCTTCAAGATTCAAAGGTGTTGTTCCTCAACCAAATGGAAGA 278 Query 435 TGGGGAGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGGACATTCAACGAAGAA 494 ||||||||||||||||||||||||||||| ||||| ||||| || || |||||||||||| Sbjct 279 TGGGGAGCTCAGATTTACGAGAAACACCAACGCGTATGGCTTGGTACTTTCAACGAAGAA 338 Query 495 GACGAAGCCGCTCGTGCCTACGACGTCGCGGTTCACAGGTTCCGTCGCCGTGACGCCGTC 554 |||||||| |||||||| ||||||||||||| |||| | |||||| ||||||||||||| Sbjct 339 GACGAAGCAGCTCGTGCTTACGACGTCGCGGCTCACCGTTTCCGTGGCCGTGACGCCGTT 398 Query 555 ACAAATTTCAAAGACGTGAAGATGGACGAAGACGAGGTCGATTTCTTGAATTCTCATTCG 614 || ||||||||||| || | | ||||| |||||||| |||||||| || | |||||| Sbjct 399 ACTAATTTCAAAGAAACGACGTTCGACGATGACGAGGTTGATTTCTTAAACGCACATTCG 458 Query 615 AAATCTGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGTTAGAGCAGAGT 674 ||||| |||||||| ||||||||||| ||||| ||||| || |||||||||||||| || Sbjct 459 AAATCAGAGATCGTAGATATGTTGAGAAAACACACTTACAAAGAAGAGTTAGAGCAAAGG 518 Query 675 AAACGGCGTCGTAATGGTAACGGAAACATGACTAGGACGTTGTTAACGTCGGGGTTGAGT 734 ||||| ||||| ||||||||||||| ||| | ||| ||| | || || || Sbjct 519 AAACGTAACCGTAACGGTAACGGAAACAAGAC--G-ACGGAGTT----T-GG--TTCCGT 568 Query 735 AAT-GATGGTGTTTCTACGACGGGGTTTAGATCGGCGGAGGCACTGTTTGAGAAAGCGGT 793 | | ||| | || || |||||||||| | || ||||| ||||||||||||| |||| Sbjct 569 TACCG-TGGCGGTTATA--ACGGGGTTTAAAACGTCGGAGTTACTGTTTGAGAAAACGGT 625 Query 794 AACGCCAAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGAAACATCACGCAGAGAA 853 ||||||||| ||||| ||||| ||||||||||| |||||||| ||||| || || ||||| Sbjct 626 AACGCCAAGTGACGTCGGGAAACTAAACCGTTTAGTTATACCAAAACACCAAGCGGAGAA 685 Query 854 ACATTTTCCGTTACCGTCAAGTAA------CGTTTCCGTGAAAGG-AGTGTTGTTGAACT 906 ||||||||||||||||| | |||| ||| ||||| ||||| | | ||||||| | Sbjct 686 ACATTTTCCGTTACCGTTAGGTAATAATAACGTCTCCGTTAAAGGTA-TACTGTTGAA-T 743 Query 907 TT-GAGGACGTTAACGGGAAAGTGTGGAGGTTCCGTTACTCGTATTGGAACAGTAGTCAG 965 || || ||||||||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct 744 TTCGAAGACGTTAACGGAAAAGTGTGGAGGTTCCGTTACTCTTACTGGAATAGTAGTCAA 803 Query 966 AGTTATGTTTTGACTAAAGGTTGGAGCAGGTTCGTTAAGGAGAAGA-ATCTACGTGCTGG 1024 |||||||| ||||| ||||||||||| || || ||||| ||||||| | || |||| || Sbjct 804 AGTTATGTGTTGACCAAAGGTTGGAGTAGATTTGTTAAAGAGAAGAGA-CTTTGTGCCGG 862 Query 1025 TGACGTGGTTAGTTTCAGTAGATCTAACGGTCAGGATCAACAGTTGTACATTGGGTGGAA 1084 ||| || | ||||| | ||||||||||||||||||||| |||||| ||||| ||||| Sbjct 863 TGATTTGATCAGTTTTAAAAGATCTAACGGTCAGGATCAAAAGTTGTTTATTGGTTGGAA 922 Query 1085 GTCGA-----G-ATCCGGGTCAGATTTAGATGCGGGTCGGGTTTTGAGATTGTTCGGAGT 1138 |||| | ||||||||| ||| ||| | ||||||||| |||||||||| || || Sbjct 923 ATCGAAATTCGGATCCGGGTCGGATCAAGAAACAGGTCGGGTTGTGAGATTGTTTGGGGT 982 Query 1139 TAACATTTC 1147 | ||||||| Sbjct 983 TGACATTTC 991 > Ahg921660 jgi|Araly1|921660|scaffold_102941.1 Length=1120 Score = 316 bits (171), Expect = 2e-85 Identities = 590/779 (76%), Gaps = 81/779 (10%) Strand=Plus/Plus Query 318 TACAGGATGGGAA---GCGGATCAAGCGTTGTGTTAGATTCAGAGAACGGCGTAGAAG-C 373 ||||| ||||||| ||||| ||||| || || |||| ||| |||||||| | || | Sbjct 144 TACAGAATGGGAAGCGGCGGAAGTAGCGTCGTTTTGGATTTAGATAACGGCGTCG-AGAC 202 Query 374 TGAATCTA-GGAAGCTTCCGTCGTCAAAATACAAAGGTGTGGTGCCACAACCAAACGGAA 432 || || | ||||||| |||||||| ||||||||||| || ||||| ||||| ||||||| Sbjct 203 CGAGTC-ACGGAAGCTCCCGTCGTCGAAATACAAAGGCGTTGTGCCTCAACCTAACGGAA 261 Query 433 GATGGGGAGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGGACATTCAACGAAG 492 ||||||||||||||||||||||||| || ||||| || |||||||| || |||||||||| Sbjct 262 GATGGGGAGCTCAGATTTACGAGAAGCATCAGCGAGTTTGGCTCGGTACTTTCAACGAAG 321 Query 493 AAGACGAAGCCGCT-CGTGCCTACGACGTCGCGGTTCAC-AGGTTCCGTCGCCGTGACGC 550 |||| |||||||| | | | |||||| |||| | | | || |||||| |||||||||| Sbjct 322 AAGAAGAAGCCGCGACTT-CTTACGACATCGCCGCT-AGGAGATTCCGTGGCCGTGACGC 379 Query 551 CGTCACAAATTTCAAAGACGTGAAG---ATGGA--CGAAGACGAGGTCGA-TTT-CTTGA 603 |||||| ||||||||| | | ||| ||||| ||||| ||| || ||| ||||| Sbjct 380 CGTCACTAATTTCAAAT-C-TCAAGTTGATGGAAACGAAGCCGAAA-CGGCTTTTCTTGA 436 Query 604 ATTCTCATTCGAAATCTGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGT 663 ||||||| ||| |||||||||||||||||||||||||||| ||||| ||| |||| Sbjct 437 CG-CTCATTCTAAAGCTGAGATCGTTGATATGTTGAGGAAACACACTTACGCCGATGAGT 495 Query 664 TAGAGCAGAGTAAACGGCG-TCGTAATGGTAACGGAAACATGACTAGGACGTTGTTAACG 722 | |||||||| |||||| | | || |||||| ||| || | ||| ||| | Sbjct 496 TTGAGCAGAGCAAACGGAAAT--T--TGTTAACGGTAACG-GAA-A--ACGCTGTGGA-- 545 Query 723 TCGGGGTTGAGTAATG-ATGGTGTTTCTACGACGGGGTTT--AGATCGGCG-GAGGCACT 778 |||| | | | ||| | || |||||| |||| ||| || || |||| | Sbjct 546 TCGGAGACG-GCGATGCACGGAA-----ACGACGCAGTTTTGAGAGCG-CGTGAGGTTTT 598 Query 779 GTTTGAGAA-AGCGGTAACGCCAAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGA 837 ||| ||||| | | || ||||| || ||||| |||||||| |||||||| || ||||||| Sbjct 599 GTTCGAGAAGA-CTGTGACGCCGAGTGACGTCGGGAAGCTGAACCGTTTAGTGATACCGA 657 Query 838 AACATCACGCAGAGAAACATTTTCCGTTACCGTC-A--A-G-------T----A--A--C 878 |||| ||||| ||||| ||||||||||||||| | | | | | | | | Sbjct 658 AACAACACGCGGAGAAGCATTTTCCGTTACCGGCGACGACGACGGCGATGGGGATGAGTC 717 Query 879 -GTTTCCGT-GAAAGGAGTGTTG-TTGAACTTTGAGGAC-GTTAAC-GGGAAAGTGTGGA 933 || |||| |||||| || ||| || ||||| || ||| | ||| |||||||||||| Sbjct 718 CGTCTCCGACGAAAGGCGTTTTGATT-AACTTGGAAGACAG--AACAGGGAAAGTGTGGC 774 Query 934 GGTTCCGTTACTCGT-ATTGGAACAGTAGTCAGAGTTATGTTTTGACTAAAGGTTGGAGC 992 ||||||||||| || | |||||||| ||||||||||| || ||||| || || |||||| Sbjct 775 GGTTCCGTTACA-GTTACTGGAACAGCAGTCAGAGTTACGTGTTGACCAAGGGCTGGAGC 833 Query 993 AGGTTCGTTAAGGAGAAGAATCT-ACGTGCTGGTGACGTGGTT-AGTTTC-AGTAGATC 1048 |||||||||| ||||||||||| | | || ||||| |||||| | |||| || ||||| Sbjct 834 CGGTTCGTTAAAGAGAAGAATCTCA-GAGCCGGTGATGTGGTTTA-TTTCGAG-AGATC 889 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59001789505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5