BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13280.1 Length=1258 Score E Sequences producing significant alignments: (Bits) Value Ahg334627 jgi|Araly1|334627|fgenesh1_pg.C_scaffold_1001192 1181 0.0 Ahg920201 jgi|Araly1|920201|scaffold_101482.1 69.4 6e-11 > Ahg334627 jgi|Araly1|334627|fgenesh1_pg.C_scaffold_1001192 Length=759 Score = 1181 bits (639), Expect = 0.0 Identities = 719/759 (95%), Gaps = 0/759 (0%) Strand=Plus/Plus Query 177 ATGGCTTCTTCTGCTGCTGCATCGATCTCTATGATAACTCTAAGGAACCTCTCTCGCAAT 236 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGGCTTCTTCTGCTGCTGCATCGATCTCTTTGATAACTCTAAGGAACCTCTCTCGCAAT 60 Query 237 CATCAATCTCACCAAAGCACTTTTCTCGGTTTCTCTAGATCCTTCCATAACCAAAGGATC 296 ||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||||| Sbjct 61 CATCAATCTCACCTAAGCTCTCTTCTTGGTTTCTCTAGATCCTTCCATAACCAAAGGATC 120 Query 297 TCATCTAACAGTCCAGGTCTCTCCACACGAGCAAGATCCACCACTTCCTCCACTGGAGGT 356 ||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||| Sbjct 121 TCATCTAACGGTCCAGGTTTCTCCAAACGAGCAAGATCCACCACTTCCTCCACTAGAGGT 180 Query 357 TTCTTCAGAACCATTTGCAGCAGCAGTAGCAATGACTACTCCAGACCAACTAAGATCCAA 416 |||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||| Sbjct 181 TTCTTCAGAACCATTTGCAGCAGCAGCAACAGCGACAACTCCAGACCAACTAAGATCCAA 240 Query 417 GAGCTTAACGTCTACGAGTTCAACGAAGGTGATCGAAACAGTCCAGCGGTTTTAAAACTA 476 ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 GAGCTTAACGTGTACGAGTTCAACGAAGGTGATCGAAACAGTCCAGCGGTTCTAAAACTC 300 Query 477 GGGAAAAAACCAGATCAGCTTTGTCTCGGAGATCTTGTCCCCTTCACAAACAAACTCTAC 536 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 301 GGAAAAAAACCAGATCAGCTTTGTCTCGGCGATCTTGTCCCCTTCACAAACAAACTCTAC 360 Query 537 ACAGGAGATCTCACAAAACGCATAGGAATCACCGCAGGTCTCTGCGTTTTGATCCAACAT 596 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACCGGAGATCTTACAAAACGCATAGGAATCACCGCAGGTCTCTGCGTTTTGATCCAACAT 420 Query 597 GTTCCAGAGAAGAAAGGTGATCGCTTTGAAGCTTCTTACAGTTTCTACTTCGGAGATTAT 656 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 421 GTTCCAGAGAAGAAAGGTGATCGTTTTGAAGCCTCTTACAGTTTCTACTTCGGAGATTAT 480 Query 657 GGTCACATATCAGTTCAAGGACCTTATCTCACTTACGAGGACACGTTTCTTGCTATCACC 716 || |||||||| || |||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 481 GGCCACATATCCGTACAAGGACCTTATCTCACTTATGAGGATACGTTTCTTGCTATCACC 540 Query 717 GGTGGCTCCGGCGTGTTTGAAGGAGCTTATGGACAGGTCAAGCTTCGTCAGCTTGTGTAT 776 |||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| Sbjct 541 GGTGGCTCCGGCGTCTTTGAAGGAGCGTACGGACAGGTCAAGCTTCGTCAGCTTGTGTAT 600 Query 777 CCTACGAAGCTGTTTTACACTTTCTACTTGAAAGGTGTTGCTGCTGATTTACCTGTGGAG 836 || |||||| ||||||||||||| |||||||||||||||| ||||||||| || |||||| Sbjct 601 CCAACGAAGTTGTTTTACACTTTTTACTTGAAAGGTGTTGTTGCTGATTTGCCGGTGGAG 660 Query 837 CTTACCGGAAAACATGTTGAGCCGTCGAAGGAAGTGAAACCGGCGGCTGAAGCTCAGGCG 896 |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 661 CTTACCGGGAAACATGTTGAGCCGTCGAAGGATGTGAAACCGGCGGCGGAAGCTCAGGCG 720 Query 897 ACTCAGCCCGGCGCTACGATCGCTAACTTTACTAATTGA 935 ||||||||||||||||||||||||||||||||||||||| Sbjct 721 ACTCAGCCCGGCGCTACGATCGCTAACTTTACTAATTGA 759 > Ahg920201 jgi|Araly1|920201|scaffold_101482.1 Length=204 Score = 69.4 bits (37), Expect = 6e-11 Identities = 109/140 (78%), Gaps = 19/140 (14%) Strand=Plus/Minus Query 977 GGCTGTTGTTCATTGTGTTTACATTTTAATAATGGGCCTAAATAATGAGC---CT--T-T 1030 ||||| | ||||||||||| ||||||||||||||||||| || || || | | | Sbjct 204 GGCTG-T-TTCATTGTGTTAACATTTTAATAATGGGCCTTTGTATTGGGCTTTTTAATGT 147 Query 1031 GTA-T-T-GGGCCGTTCTCGTAA-GCGTAAT-GTGTCCCGTCCCTATAAGCTGGATTTAA 1085 ||| | | | |||| ||||||| |||| || |||| | | | | ||||||||||||| Sbjct 146 GTACTATAGAGCCG-ACTCGTAATGCGT-ATAATGTCTC-T-AC-A-AAGCTGGATTTAA 93 Query 1086 GCGCGTGAACTCCACCTTCC 1105 |||||||||||||||||||| Sbjct 92 GCGCGTGAACTCCACCTTCC 73 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47005556661 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5