BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13440.1 Length=1439 Score E Sequences producing significant alignments: (Bits) Value Ahg471499 jgi|Araly1|471499|fgenesh2_kg.1__1453__AT1G13440.1 1914 0.0 Ahg477673 jgi|Araly1|477673|fgenesh2_kg.3__374__AT3G04120.1 1365 0.0 > Ahg471499 jgi|Araly1|471499|fgenesh2_kg.1__1453__AT1G13440.1 Length=1361 Score = 1914 bits (1036), Expect = 0.0 Identities = 1152/1206 (96%), Gaps = 16/1206 (1%) Strand=Plus/Plus Query 23 TTTCATCATCACGTTCTTCTTCTCTTTTAAATAACCCTAAATCCTCACCAAACCCAAACC 82 ||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||| Sbjct 1 TTTCATCATCACGTTCTTCTTCTCTTTTAAATAACCCTAAAGCCT---C--A-CCAAACC 54 Query 83 CTCACTCACTATTTTCACATtctcttctctctcgatatcatctaaatctctctcgatctc 142 ||||||||||| ||||||| | |||||||||||||||||||| ||| |||||||||||| Sbjct 55 CTCACTCACTAATTTCACA-T-TCTTCTCTCTCGATATCATCGAAA--TCTCTCGATCTC 110 Query 143 -AATTTCGCAAAATGGCTGACAAGAAGATCAGAATCGGAATCAACGGTTTCGGAAGAATC 201 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111 AAATTTCG-AAAATGGCTGACAAGAAGATCAGAATCGGAATCAACGGTTTCGGAAGAATC 169 Query 202 GGTCGTTTGGTTGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTTAAC 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 170 GGTCGTTTGGTTGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTCAAC 229 Query 262 GATCCTTTCATCACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGT 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 GATCCTTTCATCACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGT 289 Query 322 CAGTGGAAGCACCATGAGCTTAAGGTGAAGGATGACAAAACTCTTCTCTTCGGTGAGAAG 381 ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 290 CAGTGGAAGCACCATGAACTTAAGGTCAAGGATGATAAAACTCTTCTCTTCGGTGAGAAG 349 Query 382 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGACATCCCATGGGGTGAGGCTGGAGCT 441 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 350 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGAGATCCCATGGGGTGAGGCTGGAGCT 409 Query 442 GACTTTGTTGTTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCTGCTCACTTG 501 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 410 GACTTTGTTGTTGAGTCTACTGGTGTCTTCACTGACAAGGACAAGGCAGCTGCTCACTTG 469 Query 502 AAGGGTGGTGCTAAAAAGGTTGTCATCTCTGCCCCAAGCAAAGATGCGCCCATGTTCGTT 561 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || Sbjct 470 AAGGGTGGTGCTAAAAAGGTTGTCATCTCTGCGCCAAGCAAAGATGCTCCCATGTTTGTC 529 Query 562 GTTGGTGTCAACGAGCACGAGTACAAGTCTGACCTTGACATTGTTTCCAACGCTAGTTGC 621 ||||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||||||| Sbjct 530 GTTGGTGTCAATGAGCATGAATACAAGTCTGATCTTGACATTGTTTCCAATGCTAGTTGC 589 Query 622 ACCACTAACTGCCTTGCTCCTCTTGCCAAGGTTATTAATGACAGGTTTGGCATTGTTGAG 681 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 590 ACCACTAACTGCCTTGCTCCTCTTGCCAAGGTTATTAACGACAGATTTGGGATTGTTGAG 649 Query 682 GGACTCATGACCACTGTCCACTCTATCACTGCTACTCAGAAGACAGTTGATGGTCCATCA 741 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 650 GGACTCATGACCACTGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCA 709 Query 742 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGT 801 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGT 769 Query 802 GCCGCCAAGGCTGTTGGGAAAGTGTTGCCATCCCTCAATGGAAAATTGACCGGAATGTCT 861 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 770 GCCGCCAAGGCTGTTGGCAAAGTGTTGCCATCCCTCAATGGAAAATTGACTGGAATGTCT 829 Query 862 TTCCGTGTTCCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCT 921 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 TTCCGTGTTCCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCT 889 Query 922 GCAACATACGACGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAAATGAAGGGA 981 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 890 GCAACATACGATGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAACTGAAGGGA 949 Query 982 ATTTTGGGATACACTGAGGATGATGTTGTGTCTACCGACTTTGTTGGTGACAACAGGTCA 1041 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 950 ATTTTGGGATACACCGAGGATGATGTTGTGTCTACTGACTTTGTCGGTGACAACAGGTCA 1009 Query 1042 AGCATTTTCGATGCCAAGGCTGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCA 1101 ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1010 AGCATATTCGATGCTAAGGCAGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCA 1069 Query 1102 TGGTACGACAACGAATGGGGTTACAGTTCTCGTGTCGTTGACCTTATCGTTCACATGTCA 1161 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1070 TGGTACGACAACGAGTGGGGTTACAGTTCTCGTGTCGTCGACCTTATCGTTCACATGTCA 1129 Query 1162 AAGGCCTAAGCTTACACCGGCGAGAGTTTGTGTGTGGTTGAGTTCGTACTGTTCTGAATa 1221 |||||||||| ||||||| || ||||||||||||| | |||| |||||||||||||||| Sbjct 1130 AAGGCCTAAGTTTACACCAGCAAGAGTTTGTGTGT--T-GAGT-CGTACTGTTCTGAATA 1185 Query 1222 aaaaaa 1227 |||||| Sbjct 1186 AAAAAA 1191 Score = 198 bits (107), Expect = 8e-50 Identities = 156/177 (88%), Gaps = 13/177 (7%) Strand=Plus/Plus Query 1259 TTTCACTGATTCCATGCGCAGTCATGAGAGTTTGTAGCTTTTGT--CTTTTTGCTTTCTC 1316 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1192 TTTCACTGATTCCATGCGCAGTCATGAGAGTTTGTAGCTTTTTTTTCTTTTTGCTTTCTA 1251 Query 1317 TTAATGTTTCCCTGCTTT-ATTTACT-GAAACCATTGGTTTGGTTTTTTATGTTAATTAA 1374 |||||||||||||||||| | | | ||||||||||||||||||||| |||||||| | Sbjct 1252 TTAATGTTTCCCTGCTTTGAA--AGTTGAAACCATTGGTTTGGTTTTT-ATGTTAATGA- 1307 Query 1375 GTTTTTAGTTCATT-ACTTTCTCGTGCTAACTCAAACCCAACTGGCAACTGGAACAT 1430 |||| |||||||| | ||| ||||| ||||||||| |||||||||||||| ||||| Sbjct 1308 GTTT--AGTTCATTGA-TTT-TCGTGGTAACTCAAATCCAACTGGCAACTGCAACAT 1360 > Ahg477673 jgi|Araly1|477673|fgenesh2_kg.3__374__AT3G04120.1 Length=1429 Score = 1365 bits (739), Expect = 0.0 Identities = 933/1027 (91%), Gaps = 12/1027 (1%) Strand=Plus/Plus Query 153 AATGGCTGACAAGAAGA-TCAGAATCGGAATCAACGGTTTCGGAAGAATCGGTCGTTTGG 211 ||||||||||||||||| | || |||||||||||||| |||||||||||||||||||||| Sbjct 129 AATGGCTGACAAGAAGATTAAG-ATCGGAATCAACGGATTCGGAAGAATCGGTCGTTTGG 187 Query 212 TTGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTTAACGATCCTTTCA 271 ||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| Sbjct 188 TTGCTAGAGTTGTTCTTCAGAGGGACGATGTTGAGCTCGTCGCTGTTAACGACCCCTTCA 247 Query 272 TCACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGTCAGTGGAAGC 331 ||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| | Sbjct 248 TCACCACTGAGTACATGACCTACATGTTCAAGTATGACAGTGTTCACGGTCAATGGAAAC 307 Query 332 ACCATGAGCTTAAGGTGAAGGATGACAAAACTCTTCTCTTCGGTGAGAAGCCAGTCACTG 391 || |||| || ||| | |||||||| || || |||||||||||||||||||||||||||| Sbjct 308 ACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAGCCAGTCACTG 367 Query 392 TTTTCGGCATCAGGAACCCTGAGGACATCCCATGGGGTGAGGCTGGAGCTGACTTTGTTG 451 ||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| Sbjct 368 TTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCTGACTATGTTG 427 Query 452 TTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCTGCTCACTTGAAGGGTGGTG 511 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 428 TTGAGTCTACCGGTGTCTTCACTGACAAAGACAAGGCTGCCGCTCACTTGAAGGGTGGGG 487 Query 512 CTAAAAAGGTTGTCATCTCTGCCCCAAGCAAAGATGCGCCCATGTTCGTTGTTGGTGTCA 571 | || |||||||||||||||||||| |||||||| || |||||||| ||||||||||||| Sbjct 488 CCAAGAAGGTTGTCATCTCTGCCCCCAGCAAAGACGCTCCCATGTTTGTTGTTGGTGTCA 547 Query 572 ACGAGCACGAGTACAAGTCTGACCTTGACATTGTTTCCAACGCTAGTTGCACCACTAACT 631 |||||||||| |||||||| ||||||||||| || ||||||||||| ||||||||||||| Sbjct 548 ACGAGCACGAATACAAGTCCGACCTTGACATCGTCTCCAACGCTAGCTGCACCACTAACT 607 Query 632 GCCTTGCTCCTCTTGCCAAGGTTATTAATGACAGGTTTGGCATTGTTGAGGGACTCATGA 691 |||||||||| |||||||||||||| |||||||||||||| |||||||| || || |||| Sbjct 608 GCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGGTTTGGAATTGTTGAAGGTCTTATGA 667 Query 692 CCACTGTCCACTCTATCACTGCTACTCAGAAGACAGTTGATGGTCCATCAATGAAGGACT 751 | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 668 CAACAGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCAATGAAGGACT 727 Query 752 GGAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGTGCCGCCAAGG 811 |||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||| Sbjct 728 GGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGAGCTGCCAAGG 787 Query 812 CTGTTGGGAAAG-TG-TTGCCATCCCTCAATGGAAAATTGACCGGAATGTCTTTCCGTGT 869 |||| || |||| || || ||| |||| || ||||| |||||||| |||||||||||||| Sbjct 788 CTGTCGG-AAAGGTGCTT-CCAGCCCTTAACGGAAAGTTGACCGGCATGTCTTTCCGTGT 845 Query 870 TCCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCTGCAACATA 929 |||||||||||||||||||||||||| || || || ||||| ||||||||||| || || Sbjct 846 CCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCTGCTACCTA 905 Query 930 CGACGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAAATGAAGGGAATT-TTGG 988 || |||||||| ||||| |||||||||||||||||||||||| | ||||||||| |||| Sbjct 906 TGATGAAATCAAAAAGGCTATCAAGGAGGAATCTGAAGGCAAACTCAAGGGAATTCTTGG 965 Query 989 GATACACTGAGGATGATGTTGTGTCTACCGACTTTGTTGGTGACAACAGGTCAAGCAT-T 1047 |||||| |||||||||||||| || || ||||| ||||||||||||||||| ||||| | Sbjct 966 -ATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGTGACAACAGGTCGAGCATAT 1024 Query 1048 TTCGATGCCAAGGCTGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCATGGTAC 1107 || || ||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1025 TT-GACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAACTGGTGTCATGGTAC 1083 Query 1108 GACAACGAATGGGGTTACAGTTCTCGTGTCGTTGACCTT-ATCGTTCACATGTCAAAGGC 1166 |||||||||||||||||||||||||| || || ||| || |||||||||||||||||||| Sbjct 1084 GACAACGAATGGGGTTACAGTTCTCGAGTGGTCGAC-TTGATCGTTCACATGTCAAAGGC 1142 Query 1167 CTAAGCT 1173 ||||||| Sbjct 1143 CTAAGCT 1149 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53821516185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5