BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13560.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471515 jgi|Araly1|471515|fgenesh2_kg.1__1469__AT1G13560.1 2320 0.0
Ahg484318 jgi|Araly1|484318|fgenesh2_kg.5__310__AT3G25585.1 1155 0.0
Ahg333426 jgi|Araly1|333426|fgenesh1_pm.C_scaffold_990000001 869 0.0
> Ahg471515 jgi|Araly1|471515|fgenesh2_kg.1__1469__AT1G13560.1
Length=1612
Score = 2320 bits (1256), Expect = 0.0
Identities = 1405/1474 (95%), Gaps = 22/1474 (1%)
Strand=Plus/Plus
Query 26 CTCTCCTTTTGCTTCTGGTCCTCTCGTCCCGTTTCGCCGCTCTCTATAGGGGCAAGTGAG 85
|||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||
Sbjct 32 CTCTCCTTTTGCTTCTGGTCCTCTCGTCTCGTTTCGCCG--CTCTATA-GGGCAAGAGAG 88
Query 86 AGGTTACTGTCTC--T-TTCT-TC--TTTCAGACACTCGAGACGAGAAAGGCTCGTATCT 139
|| | ||||||| | |||| || ||||||||| ||||||||||||||||||||||||
Sbjct 89 AGATCGCTGTCTCTTTGTTCTCTCTTTTTCAGACAGTCGAGACGAGAAAGGCTCGTATCT 148
Query 140 GATTTTA---CC--G--CCACCGGAC---CATCTGTGATAGACAATAATGGGTTACATAG 189
||||||| || | ||||||||| |||| |||||||| || ||||||||||||||
Sbjct 149 GATTTTACCGCCAAGAACCACCGGACTATCATCAGTGATAGAGAAGAATGGGTTACATAG 208
Query 190 GAGCTCATGGTGTAGCAGCTCTTCATAGGTACAAATACAGTGGAGTGGATCACTCTTATC 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 GAGCTCATGGTGTAGCAGCTCTTCATAGGTACAAATACAGTGGAGTGGATCACTCTTATC 268
Query 250 TTGCCAAATACGTCCTCCAACCTTTTTGGACTCGATTTGTCAAAGTCTTCCCTCTATGGA 309
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TTGCCAAATACGTGCTCCAACCTTTTTGGACTCGATTTGTCAAAGTCTTCCCTCTATGGA 328
Query 310 TGCCACCAAACATGATAACGCTTATGGGGTTTATGTTTCTAGTCACTTCCTCCCTGCTAG 369
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 329 TGCCACCAAACATGATAACGCTTATGGGGTTTATGTTTCTAGTCACTTCCTCTCTGCTAG 388
Query 370 GCTATATATATTCACCTCAGTTGGATTCTCCTCCTCCACGATGGGTTCACTTCGCACATG 429
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 GTTATATATATTCACCTCAGTTGGATTCTCCTCCTCCACGATGGGTTCACTTCGCACATG 448
Query 430 GTTTACTTCTCTTCTTGTATCAGACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGA 489
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 449 GTTTACTTCTCTTCTTGTATCAGACATTCGATGCGGTCGATGGGAAGCAAGCAAGAAGGA 508
Query 490 CAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGGTTGTGACGCGCTTGCTTGTG 549
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 509 CAAATTCCTCTAGCCCCCTGGGAGAGCTTTTCGATCATGGTTGTGACGCACTTGCTTGTG 568
Query 550 CGTTTGAAGCCATGGCATTTGGAAGCACTGCAATGTGTGGAAGAGATACTTTCTGGTTCT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CGTTTGAAGCCATGGCATTTGGAAGCACTGCAATGTGTGGAAGAGATACTTTCTGGTTCT 628
Query 610 GGGTTATTTCAGCTATTCCATTTTATGGAGCTACATGGGAACACTATTTCACCAACACAC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GGGTTATTTCAGCTATTCCATTTTATGGAGCTACATGGGAACACTATTTCACCAACACAC 688
Query 670 TTATTCTTCCGGTTATCAATGGGCCTACAGAGGGGCTTGCACTTATATTTGTCAGCCACT 729
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 689 TTATTCTTCCGGTTATCAATGGGCCTACTGAGGGTCTTGCACTTATATTTGTCAGCCACT 748
Query 730 TCTTCACAGCCATCGTCGGTGCTGAATGGTGGGCTCAGCAGTTAGGGCAGTCAATACCAT 789
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 749 TCTTCACAGCCATTGTCGGTGCTGAATGGTGGGCTCAGCAGTTGGGGCAGTCAATACCAT 808
Query 790 TGTTTAGTTGGGTGCCATTTGTGAATGAGATTCAAACTTCTAGAGCAGTGCTATACATGA 849
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 809 TGTTTAGTTGGGTGCCATTTGTGAATGAGATCCAAACTTCCAGAGCAGTGCTATACATGA 868
Query 850 TGATCGCTTTTGCTGTTATACCAACCGTTGCATTCAATGTAACAAATGTCTACAAAGTCG 909
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 869 TGATTGCTTTTGCTGTTATACCAACCGTTGCATTCAATGTAAAAAATGTCTACAAAGTCG 928
Query 910 TTCGATCAAGAAACGGGAGCATGGTGTTAGCGTTAGCTATGCTGTATCCCTTCGTTGTCT 969
||| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 929 TTCAATCAAGAAAAGGGAGCATGGTGTTAGCACTAGCTATGCTGTATCCCTTTGTTGTCC 988
Query 970 TACTTGGAGGAGTTTTGATATGGGATTACTTGTCTCCAATCAATCTCATAGCAACATATC 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 989 TACTTGGAGGAGTTTTGATATGGGATTACTTGTCTCCAATCAATCTCATAGCAACATACC 1048
Query 1030 CTCACTTAGTTGTACTCGGAACTGGACTTGCATTTGGATTTT-TAGTGGGAAGAATGATT 1088
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1049 CTCACTTAGTTGTACTCGGAACTGGACTTGCATTTGG-TTTTCTAGTGGGAAGAATGATT 1107
Query 1089 CTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATGTCACTACTC 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1108 CTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATGTCGCTACTC 1167
Query 1149 TATCTTCCCTTTGCACTTGCAAATGCGCTAACCGCAAGATTGAATGCTGGGGTTCCTCTA 1208
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1168 TATCTTCCCTTTGCGCTCGCAAATGCGCTAACCGCGAGATTGAATGCTGGGGTTCCTCTA 1227
Query 1209 GTCGACGAATTATGGGTTCTTCTTGGCTACTGCATATTCACAGTGTCATTATACTTGCAC 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GTCGACGAATTATGGGTTCTTCTTGGCTACTGCATATTCACAGTGTCATTATACTTGCAC 1287
Query 1269 TTTGCAACATCAGTCATCCATGAGATCACTGAGGCCCTTGGAATCTACTGCTTTAGGATC 1328
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1288 TTTGCAACATCGGTCATCCATGAGATCACTGAGGCTCTTGGAATCTACTGCTTCAGGATC 1347
Query 1329 ACGCGTAAAGAAGCTTGAAAAGAAACCTTTGACACTGCGAATGGTCGATATGGACCAGTT 1388
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1348 ACACGTAAAGAAGCTTGAAAAGAAACCTTTGACACAGCGAATGGTCGATATGGACCTGTT 1407
Query 1389 GGATCGGTGATGTATTTCTTCTTCTTATTCATTGTTGTCTGTTTGATCAGGATAGGTGAA 1448
| ||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1408 GCATCGGTGGTGTATTTCTTCTTATTATTCATTGTTGTCTGTTTGGTCAGGATAGGTGAA 1467
Query 1449 GTTATGTAGAACTTTGTATAATGTTCTTGTTTTT 1482
|||||||||||||||| ||||||||||||||||
Sbjct 1468 -TTATGTAGAACTTTGTGTAATGTTCTTGTTTTT 1500
Score = 143 bits (77), Expect = 5e-33
Identities = 87/91 (96%), Gaps = 3/91 (3%)
Strand=Plus/Plus
Query 1576 GAAAATTGGC-TGGCTGGATTTGG-TTTGCAAGCATTTCAGGAATTGGTTGACTTTTGAC 1633
||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1523 GAAAATT-GCTTGGCTGGATTTGGTTTTGCAAGCATTTGAGGAATTGGTTGACTTTTGAC 1581
Query 1634 TTTTTGTAATACGACTATACCAAAGAGTTCT 1664
|||||||||||||||||||||||||||||||
Sbjct 1582 TTTTTGTAATACGACTATACCAAAGAGTTCT 1612
> Ahg484318 jgi|Araly1|484318|fgenesh2_kg.5__310__AT3G25585.1
Length=1636
Score = 1155 bits (625), Expect = 0.0
Identities = 1010/1194 (85%), Gaps = 33/1194 (3%)
Strand=Plus/Plus
Query 176 AATGGGTTACATAGGAGCTCATGGTGTAGCAGCTCTTCATAGGTACAAATACAGTGGAGT 235
|||||||||||||||||||||||||||||| |||||| | | ||||||||||||| ||
Sbjct 209 AATGGGTTACATAGGAGCTCATGGTGTAGCTGCTCTTAAGAAACACAAATACAGTGGTGT 268
Query 236 GGATCACTCTTATCTTGCCAAATACGTCCTCCAACCTTTTTGG-ACTCGATTTGTCAAAG 294
||||| ||||||||||||||||| || ||||||||||||||| || || |||||||||
Sbjct 269 TGATCATTCTTATCTTGCCAAATATGTTCTCCAACCTTTTTGGAAC-CGTTTTGTCAAAA 327
Query 295 TCTTCCCTCTATGGATGCCACCAAACATGATAACGCTTATGGGGTTTATGTTTCTAGTCA 354
|||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||| |||
Sbjct 328 TCTTCCCTCTTTGGATGCCACCCAACATGATAACACTTATGGGGTTCATGTTTCTTCTCA 387
Query 355 CTTCCT-CCCTGCTAGGCTATATATATTCACCTCAGTTGGATTCTCCTCCTCCACGATGG 413
| | || | ||| ||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 388 CAT-CTGCTCTGTTAGGCTATATATACTCACCTAAGTTGGATTCTCCTCCTCCTCGATGG 446
Query 414 GTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGACATTTGATGCGGTTGATGGG 473
|| || || ||||| || |||||||| || ||||||||||||||||||||||||||||||
Sbjct 447 GTCCATTTTGCACACGGCTTACTTCTATTTTTGTATCAGACATTTGATGCGGTTGATGGG 506
Query 474 AAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGGTTGT 533
||||||||| |||| |||||||| |||||||| ||||||||||| || || ||||||||
Sbjct 507 AAGCAAGCACGAAGAACAAATTCATCTAGCCCACTAGGAGAGCTTTTTGACCATGGTTGC 566
Query 534 GACGCGCTTGCTTGTGCGTTTGAAGCCATGGCATTTGGAAGCACTGCAATGTGTGGAAGA 593
|| || |||| ||||||||| ||| | ||||||| ||| |||||||||||||||||||||
Sbjct 567 GATGCTCTTGGTTGTGCGTTAGAAACAATGGCATATGGGAGCACTGCAATGTGTGGAAGA 626
Query 594 GATACTTTCTGGTTCTGGGTTATTTCAGCTATTCCATTTTATGGAGCTACATGGGAACAC 653
|||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 627 GATACTTTCTGGTTTTGGGTTATTTCAGCTGTTCCATTTTTTGGAGCAACATGGGAACAC 686
Query 654 TATTTCACCAACACACTTATTCTTCCGGTTA-TCAATGGGCCTACAGAGGGGCTTGCACT 712
||||| ||||| || |||| ||||||||| | ||||||| |||||||| || ||||||||
Sbjct 687 TATTTTACCAATACGCTTACTCTTCCGGT-AGTCAATGGTCCTACAGAAGGTCTTGCACT 745
Query 713 TATATT-TGTCAGCCACTTCTTCACAGCCATCGTCGGTGCTGAATGGTGGGCTCAGCAGT 771
||||| ||| |||| |||||||||||||| || ||||| || ||||||||||||| ||
Sbjct 746 TATATACTGTG-GCCATTTCTTCACAGCCATTGTTGGTGCCGAGTGGTGGGCTCAGCCGT 804
Query 772 TAGGGCAGTCAATACCATTGTTTAGTTGGGTGCCATTTGTGAATGAGATTCAAACT-TCT 830
| ||| |||| || || |||||||||||||| || ||| |||| ||||| |||| | ||
Sbjct 805 TTGGGAAGTCGATTCCTTTGTTTAGTTGGGTTCCGTTTTTGAACGAGATGCAAA-TGTCC 863
Query 831 AGAGCAGTGCTATACATGATGATCG-CTTTTGCTGTTATACCAACCGTTGCATTCAAT-- 887
||| | | |||| || |||||| ||| ||||||||||||||| ||||| ||||
Sbjct 864 AGAATAATACTATTCACGATGATATTCTTC-GCTGTTATACCAACCCTTGCAATCAACAC 922
Query 888 GTAACAAATGTCTACAAAGTCGTTC-GATCAAGAAACGGGAGCATGGTGT-TAGCGTTAG 945
|| | ||||| |||||||| || | | |||||||| || || ||| | | |||| ||||
Sbjct 923 GT--CTAATGTTTACAAAGTTGTACAG-TCAAGAAAAGGAAGTATGCT-TCTAGCATTAG 978
Query 946 CTATGCTGTATCCCTTCGTTGTC-TTACTTGGAGGAGTTTTGATATGGGATTACTTGTCT 1004
||||||| |||||||| | | ||| ||| |||||||||||| |||||||||||||||
Sbjct 979 CTATGCTATATCCCTTAGCCA-CGTTAATTGCAGGAGTTTTGATTTGGGATTACTTGTCT 1037
Query 1005 CCAATCAATCTCATA-GCAACATATCCTCACTTAGTTGTACTCGGAACTGGACTTGCATT 1063
||||| |||||||| | ||| || ||||||||||||||| | |||||||| ||||||||
Sbjct 1038 CCAATTGATCTCATAAGAAAC-TACCCTCACTTAGTTGTATTGGGAACTGGTCTTGCATT 1096
Query 1064 TGGATTT-TTAGTGGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAA 1122
|||||| || ||||||||||||||||| |||||||| ||||| || || |||||| |||
Sbjct 1097 TGGATTCCTT-GTGGGAAGAATGATTCTAGCTCACTTATGTGACGAACCAAAAGGATTAA 1155
Query 1123 AAACAAACATGTGCATGTCACTACTCTATCTTCCCTTTGCACTTGCAAATGCGCTAACCG 1182
||||||||||||| |||||| | || || |||||||||||||| |||||||| |||||||
Sbjct 1156 AAACAAACATGTGTATGTCATTGCTTTACCTTCCCTTTGCACTAGCAAATGCTCTAACCG 1215
Query 1183 CAAGATTGAATG-CTGGGGTTCCTCTAGTCGACGAATTATGGGTTCTTCTTGGCTACTGC 1241
| ||| | |||| | ||||||||||| || ||||| || ||||| |||||||| || ||
Sbjct 1216 CTAGACTCAATGAC-GGGGTTCCTCTTGTGGACGAGTTTTGGGTCCTTCTTGGTTATTGT 1274
Query 1242 ATATTCACAGTGTCATTATACTT-GCACTTTGCAACATCAGTCATCCATGAGATCACTGA 1300
||||||||| ||||| |||| | ||| |||||||| |||||||| ||||||||||| |
Sbjct 1275 ATATTCACATTGTCACTATA-TGCGCATTTTGCAACTTCAGTCATTCATGAGATCACA-A 1332
Query 1301 G-GCCCTTGGAATCTACTGCTTTAGGATCACGCGTAAAGAAGCTTGAA-AAGAA 1352
|| ||||||||||||||||| ||||| || |||||||||||||||| |||||
Sbjct 1333 CTGCACTTGGAATCTACTGCTTCAGGATTACTCGTAAAGAAGCTTGAAGAAGAA 1386
> Ahg333426 jgi|Araly1|333426|fgenesh1_pm.C_scaffold_990000001
Length=846
Score = 869 bits (470), Expect = 0.0
Identities = 511/531 (96%), Gaps = 2/531 (0%)
Strand=Plus/Plus
Query 817 AGATTCAAACTTCTAGAGCAGTGCTATACATGATGATCGCTTTTGCTGTTATACCAACCG 876
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 AGATCCAAACTTCCAGAGCAGTGCTATACATGATGATCGCTTTTGCTGTTATACCAACCG 376
Query 877 TTGCATTCAATGTAACAAATGTCTACAAAGTCGTTCGATCAAGAAACGGGAGCATGGTGT 936
||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 377 TTGCATTCAATGTGTCAAATGTCTACAAAGTCGTTCAATCAAGAAAAGGGAGCATGGTGT 436
Query 937 TAGCGTTAGCTATGCTGTATCCCTTCGTTGTCTTACTTGGAGGAGTTTTGATATGGGATT 996
|||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 437 TAGCACTAGCTATGCTGTATCCCTTTGTTGTCCTACTTGGAGGAGTTTTGATATGGGATT 496
Query 997 ACTTGTCTCCAATCAATCTCATAGCAACATATCCTCACTTAGTTGTACTCGGAACTGGAC 1056
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 497 ACTTGTCTCCAATCAATCTCATAGCAACATACCCTCACTTAGTTGTACTCGGAACTGGAC 556
Query 1057 TTGCATTTGGATTTT-TAGTGGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAA 1115
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 TTGCATTTGG-TTTTCTAGTGGGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAA 615
Query 1116 GGACTAAAAACAAACATGTGCATGTCACTACTCTATCTTCCCTTTGCACTTGCAAATGCG 1175
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 616 GGACTAAAAACAAACATGTGCATGTCGCTACTCTATCTTCCCTTTGCGCTCGCAAATGCG 675
Query 1176 CTAACCGCAAGATTGAATGCTGGGGTTCCTCTAGTCGACGAATTATGGGTTCTTCTTGGC 1235
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CTAACCGCGAGATTGAATGCTGGGGTTCCTCTAGTCGACGAATTATGGGTTCTTCTTGGC 735
Query 1236 TACTGCATATTCACAGTGTCATTATACTTGCACTTTGCAACATCAGTCATCCATGAGATC 1295
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 736 TACTGCATATTCACAGTGTCATTATACTTGCACTTTGCAACATCGGTCATCCATGAGATC 795
Query 1296 ACTGAGGCCCTTGGAATCTACTGCTTTAGGATCACGCGTAAAGAAGCTTGA 1346
|||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 796 ACTGAGGCTCTTGGAATCTACTGCTTCAGGATCACGCGTAAAGAAGCTTGA 846
Score = 449 bits (243), Expect = 2e-125
Identities = 296/320 (93%), Gaps = 9/320 (3%)
Strand=Plus/Plus
Query 333 ATGGGGTTTATGTTTCTAGTCACTTCCTCCCTGCTAGGCTATATATATTCACCTCAGTTG 392
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGGTTTATGTTTCTTGTCACTTCTTCCCTGCTAGGTTATATATATTCACCTCAGTTG 60
Query 393 GATTCTCCTCCTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATTCTCCTCCTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG 120
Query 453 ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGA 512
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ACATTCGATGCGGTCGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTGGGA 180
Query 513 GAGCTCTTCGATCATGGTTGTGACGCGCTTGCTTGTGCGTTTGAAGCCATGGCATTTGGA 572
||||| |||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct 181 GAGCTTTTCGATCATGGTTGTGACGCACTTGCTTGTGCG-------CCATGGCATTTGCA 233
Query 573 AGCACTGCAATGTGTGGAAGAGATACTTTCTGGTTCTGGGTTATTTCAGCTATTCCATTT 632
|||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 234 AGCACTGCGATGTGAGAAAGAGATACTTTCTGGTTGTGGGTTATTTCAGCTATTCCATTT 293
Query 633 TATGG-AGCTAC-ATGGGAA 650
||| | |||||| ||| |||
Sbjct 294 TATCGCAGCTACGATGAGAA 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5