BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G13730.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value Ahg471532 jgi|Araly1|471532|fgenesh2_kg.1__1486__AT1G13730.1 2209 0.0 > Ahg471532 jgi|Araly1|471532|fgenesh2_kg.1__1486__AT1G13730.1 Length=1730 Score = 2209 bits (1196), Expect = 0.0 Identities = 1560/1725 (90%), Gaps = 67/1725 (4%) Strand=Plus/Plus Query 89 CAACAATCCCAATTTCTCCTCGTCGGAGATTTCTAAGTAAAACCCTAGAACTAACCATTA 148 ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 31 CAAAAATCCCAATTTCTTCTCGTCGGAGATTTCTAAGTAAAACCCTAGAACTAACCA-T- 88 Query 149 TATATATTATAATACAAATATATTCATCCCTCCCTCTCCCTGTGTCTTACTCTGTCTTCT 208 |||||| || ||| ||||||||| |||||| |||||| || |||| |||||||| Sbjct 89 TATATA-TA-AAT----ATATATTCA----TCCCTC-CCCTGTCTCCTACTTTGTCTTCT 137 Query 209 CTTCGAACTGATCTGAGATTTTTGATTCTGCTTCTCTTCTCATCTTCTCCCAAGGTAGAG 268 ||||||||| |||||||||| ||||||||||||||||||| |||||||||| |||||||| Sbjct 138 CTTCGAACTCATCTGAGATTCTTGATTCTGCTTCTCTTCTTATCTTCTCCCTAGGTAGAG 197 Query 269 ATGGCACTTGAATCAAATGCTCCAGTGGTGGACCCAAACACTATTGGCAATTCTTTTGTT 328 ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 198 ATGGCACTTGAATCAAATGCTCCTGTGGTGGATCCAAACACTATTGGCAATTCGTTTGTT 257 Query 329 GAGAAATACTACAACCTCTTGTATAAGTCACCATC-GCAAGTGCATCAGTTTTATCTCGA 387 ||| | ||||||||||||||||||||||||||| | | ||||||||||||||||||||| Sbjct 258 GAGCAGTACTACAACCTCTTGTATAAGTCACCAGCTG-TAGTGCATCAGTTTTATCTCGA 316 Query 388 CGATAGTGTTTTAGGCCGTCCTGGTTCTGATGGAGAGATGGTTTCTGTCAAATCCTTGAA 447 |||||||||||| ||||| || ||| ||||||||||||||||||| ||||||||||| || Sbjct 317 CGATAGTGTTTTGGGCCGCCCCGGTGCTGATGGAGAGATGGTTTCCGTCAAATCCTTAAA 376 Query 448 AGCTATCAATGAGCAGATTATGTCCTTCGATTACGAAATCTCAAAGATTCAGATTTTGAC 507 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 377 AGCTATCAATGAGCAGATTATGTCCTTTGATTACAAAATCTCAAAGATTCAGATTTTGAC 436 Query 508 TGCTGATTCCCAAGCATCTTACATGAATGGAGTTGTGACTCTAGTCACAGGTTTACTAAC 567 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || Sbjct 437 TGCTGATTCCCAAGCATCTTACAAGAATGGAGTTGTGACTCTAGTCACGGGTTTACTGAC 496 Query 568 CGTGAAAG-AGGGGCAAAGAATGAGATTTTCTCAATCGTTTTTCCTTGTGCCGC-TGAAT 625 |||||||| ||||| | ||||||||||||||||||||||||||||||||||||| | ||| Sbjct 497 CGTGAAAGAAGGGG-AGAGAATGAGATTTTCTCAATCGTTTTTCCTTGTGCCGCAT-AAT 554 Query 626 GGAAGCTATTTCGTTCTCAACGATGTCTTTAGGTATGTTGCTGATGAGATTGTTGAACCA 685 |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 555 GGAAGCTACTTCGTGCTGAACGATGTCTTTAGGTATGTTGCTGATGAGATTGTTGAACCA 614 Query 686 GAAGCTAACAAGAAAGAAGTCGAGGAGGTTATTCCTCAAGTGGTCCAACCAACAG----- 740 ||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||| Sbjct 615 GAAGCTAACAAGAAAGAGGTCGAGGAGGTGATTCCTCAAATGGTCCAATCAACAGTCACT 674 Query 741 A-----GC--AG--GTAG-ATGAAGTTGCAGAGCCGGTTACTATCCCTACCCAACAACCC 790 | || || | | |||||||||||||||| ||||||||||||| ||||||||| Sbjct 675 ATTTTGGCAGAGCCGGCGAATGAAGTTGCAGAGCCAGTTACTATCCCTAGTCAACAACCC 734 Query 791 GAGGCGAAACAGACAACCGAAAATACAGTGAAGAAACCAGAAAGAGCTGTAGCAAATGGA 850 | ||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||| Sbjct 735 GCGGCAAAACAGACTACTGAAAATATAGTGAAGAAACCAGAAAGAGCTGTAGCAAATGGA 794 Query 851 CATCCCAAAACACAGGAGGATAATGTTGTGAACGATAAAAGCAATGGTGTTGATGCTCCC 910 || |||||||| |||||||| || |||||||||||||||||||||| ||| ||||||||| Sbjct 795 CACCCCAAAACCCAGGAGGAAAAAGTTGTGAACGATAAAAGCAATGCTGTGGATGCTCCC 854 Query 911 AAGAAATCATTTGCA-CATATTGTCCAAGATTTGGCTCAAAACGGTGCTACATTCAATGC 969 |||||||||| |||| | ||||| ||| ||||||||||||||||||||||||||||| Sbjct 855 AAGAAATCATATGCAGGA-ATTGTTCAATCTTTGGCTCAAAACGGTGCTACATTCAATGT 913 Query 970 CAAAGCTTCTCCTGCAAAGCCTAAGTCTAAGCCTGTTACAAAGCCGAGTGCTGCTCGTGA 1029 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 914 CAAAGCTCCTCCTGCAAAGCCTAAGTCTAAGCCTGTTACAAAGCCGAGTGCTGCTCCTGA 973 Query 1030 ATCCAAAGCTCCTGCTCCTGTTTCTGAACACTCTTCTGCTGCAACAATCGACCAACAAGC 1089 ||||||||||||| | || |||||||||||||||||||||| |||| ||||||||| | Sbjct 974 ATCCAAAGCTCCTTCGCCGGTTTCTGAACACTCTTCTGCTGAAACAGTCGACCAAC---C 1030 Query 1090 TGAGGGTTATACGATATTTGTTGCCAACTTGCTCATGGACGCTACACCAGAGCAACTAAA 1149 ||| || ||||||||||||||||||||||| ||||||||| |||||||||||||| || Sbjct 1031 --AGG-TTGTACGATATTTGTTGCCAACTTGCCCATGGACGCGACACCAGAGCAACTCAA 1087 Query 1150 TGAAACATTCAAAGGTTTTGGAGCTATTACGAAAGATGGTATCCAAGTGAGAAGTTACAG 1209 |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1088 TGAAACCTTCAAAGGTTTTGGATCTATTACGAAAGATGGTATCCAAGTGAGAAGTTACAG 1147 Query 1210 GCTCAAGGGAAACTGTTTTGGCTTTGTGACATTCGCATCTGCTGAAGCTGTGAAATTGGT 1269 ||| |||||||||||||| || ||||||||||||| ||| |||||||||||||||||||| Sbjct 1148 GCTGAAGGGAAACTGTTTCGGGTTTGTGACATTCGAATCGGCTGAAGCTGTGAAATTGGT 1207 Query 1270 CCTCCAGGCTCACAAAGAATCAGCCATCAGAATCGGAAACCG-AAGAGTTTCAATAGAAG 1328 ||||||||||||||||| | ||||||||||||||||||||| || |||||||||||||| Sbjct 1208 CCTCCAGGCTCACAAAGGCTTAGCCATCAGAATCGGAAACCGCAA-AGTTTCAATAGAAG 1266 Query 1329 AGAAACGAGGCAACAACGATAATGGAAGACCCGCAATGCGAAACGGAGGTTATAGGAACG 1388 |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| Sbjct 1267 AGAAACGAGGCAACAACGATAATGGAAGACCCTCAACGCGAAATGGAGGTTATAGGAACG 1326 Query 1389 ACAACGGTTACAGAAACGATGGG-TATAGGCCTCGAGGCAACGGTTCCAATGGAGGTCGA 1447 | ||||||||||||||||||||| | ||||||| |||||||||||| ||||||||||||| Sbjct 1327 AGAACGGTTACAGAAACGATGGGGT-TAGGCCTAGAGGCAACGGTTTCAATGGAGGTCGA 1385 Query 1448 GGCTATGGAAGAAATGGATCTGAGAGACGGGGTGAATCACGCAATGGTGAGGCTCACAAT 1507 ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| Sbjct 1386 GGCCATGGAAGAAATGGATCCGAGAGACGGGGTGAATCACGCAACGGTGAGGCTTACAAT 1445 Query 1508 GGTGATGGCAAAGTTCATCAGAACGGTACGGTAGAAGCTAGCCGTTAAAATACTCAATCC 1567 ||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 1446 GGTGATGGCAAAGTTCATCAGAACGGTACGGTAAAAGCTGGCCGTGAAAATGCTCAATCC 1505 Query 1568 AGAGGCTAAACAAGTTTGAAGTCATTTG-TTAAACTCTGTTGTGTTATTGTTGTTCATTT 1626 ||||||||||||||||||||||||||| |||||||||| |||||| || |||||||||| Sbjct 1506 AGAGGCTAAACAAGTTTGAAGTCATTTTCTTAAACTCTGATGTGTTCTTATTGTTCATTT 1565 Query 1627 GAAATTGAG-----G---TTTTATAGGAAGAGATAGTgagaggga--gagagagaga--- 1673 |||| |||| | ||||||||||||||||||||||||||| |||||||||| Sbjct 1566 GAAAATGAGAATCTGAAGTTTTATAGGAAGAGATAGTGAGAGGGACAGAGAGAGAGAGAG 1625 Query 1674 -TTAGAAGTTCTTTTGGAGTAGGTTTATCTCTT-AGGTGATAATCCCTTCTTT-----GA 1726 |||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1626 ATTAGAAGTTCTTTTGGAGTAGGTTTATCTCTTTAGGTGATAATCCCTTCTTTCATTTGA 1685 Query 1727 GATTTTGTTTGGGATAACAAAAATTTGATGATTACTTTTACCTTC 1771 ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1686 GATTTTGTTTGGGATAACAAAAATTTGATGATTACTTTTACTTTC 1730 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66543658015 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5