BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13750.1
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911165 jgi|Araly1|911165|Al_scaffold_0001_1419 2898 0.0
Ahg920261 jgi|Araly1|920261|scaffold_101542.1 1480 0.0
> Ahg911165 jgi|Araly1|911165|Al_scaffold_0001_1419
Length=1842
Score = 2898 bits (1569), Expect = 0.0
Identities = 1753/1844 (95%), Gaps = 4/1844 (0%)
Strand=Plus/Plus
Query 145 ATGAGAGAATCGTTAGTTGCAATCTTGGTGACTGTTATATCAGTTCTTGGAGCAATTCAC 204
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGAGAGAATCGTTAGTTGCAATCTTGGTGACTGTTGTATCAGTTCTTGGAGCAATTCAA 60
Query 205 CAAGTGAAATCTCATGAAGACCAACCTTTATCAGGAATTGCTGTCCATAAGATTACATTT 264
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GAAGTGAAATCTCATAAAGACCAACCTTTATCAGGAATTGCTATCCATAAGATTACATTT 120
Query 265 GGTCTCAATGAAAAAGCTTATGTCAAAGCATCTCCAACAGTTCTTGGATCTAACGGTCAA 324
| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 121 GATCTCAATGAAAAAGCTTATGTCAAAGCCTCTCCAACAGTTCTTGGATCTAATGGTCAA 180
Query 325 CATAGTGAATTAGTATTGGTCCAATATAGTTCTCCGAAACCATCTGATGATGATTGGATT 384
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CATAGTGAATTGGTGTTGGTCCAATATAGTTCTCCAAAACCATCTGATGATGATTGGATT 240
Query 385 GGAGTGTTTTCTCCTGCAGATTTCAATGCTTCGACTTGTCCAGGAGATAACAAAATGGTC 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAGTGTTTTCTCCTGCAGATTTCAATGCTTCGACTTGTCCAGGAGATAACAAAATGGTC 300
Query 445 CAACCACCTCGACTTTGTTCAGCGCCTGTCAAGTTTCAATATGCAAACTTTAGTAATCCA 504
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CAACCACCTCTACTTTGTTCCGCGCCTGTCAAGTTTCAATATGCAAACTTCAGTAATCCA 360
Query 505 AGATACACCAATACTGGAACTGGTTCCTTGAAGCTTCAACTGATTAACCAAAGATCGGAT 564
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 361 AGATACACCAATACTGGAACTGGTTCCTTGAAGCTTCAACTGATCAACCAAAGATCCGAT 420
Query 565 TTCTCCTTCGCGCTCTTTTCTGGCGGTTTGTTGAATCCCAAGCTTGTGGCAATCTCAAAC 624
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 TTCTCCTTCGCGCTCTTTTCTGGCGGTTTGTTGAATCCAAAGCTTGTGGCAATCTCAAAC 480
Query 625 AAAGTAGCTTTTGAGAATCCAAACGCACCAGTTTATCCGCGGTTGGCGCTAGGCAAAGAA 684
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 481 AAAGTAGCTTTTGAGAACCCAAATGCACCAGTTTATCCGCGATTGGCGCTAGGCAAAGAA 540
Query 685 TGGGATGAAATGACAGTGACATGGACTAGTGGTTATGGACTCAACCTAGCTGAACCTGTT 744
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 541 TGGGATGAAATGACGGTGACATGGACTAGTGGTTATGGACTCAACTTAGCTGAACCTATT 600
Query 745 GTTGAGTGGGGCGTTAAAGGAGGAGAAC-GTAAACTGTCACCTGCTGGAACATTGACCTT 803
||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 601 GTTGAGTGGGGTATTAAAGGAGGAGAACTG-AAACTCTCACCTGCTGGAACATTGACCTT 659
Query 804 CGCGCGTAACAGCATGTGCGGTGCTCCTGCAAGGACCGTGGGATGGCGTGATCCCGGATA 863
|| ||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 660 CGGGCGTAACAGCATGTGCGGTGCTCCTGCAAGGACGGTTGGATGGCGTGATCCGGGATA 719
Query 864 CATACACACAGCTTTTCTCAAAGAGTTATGGCCAAACTCCAAGTATACCTACAGAGTTGG 923
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 720 CATACACACAGCTTTTCTCAAAGAATTATGGCCAAATTCCAAGTATACCTACAGAGTTGG 779
Query 924 TCATAGATTGTCCAATGGTGCATTGATCTGGAGTAAAGAATATCAATTCAAATCTTCTCC 983
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 780 GCATAGATTGTCCAATGGTGCATTGATCTGGAGTAAAGAGTATCACTTCAAATCTTCTCC 839
Query 984 TTTCCCGGGACAAAACTCTGTCCAACAAGTTGTAATCTTTGGAGACATGGGAAAGGCAGA 1043
||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||| ||
Sbjct 840 TTTCCCGGGCCAAAGCTCTCTCCAACAAGTTGTTATCTTTGGAGACATGGGAAAGGCGGA 899
Query 1044 AGTCGATGGCTCAAGCGAGTACAATGATTTCCAACGCGCTTCTCTCAACACCACAAAGCA 1103
|||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 900 GGTCGATGGATCAAACGAGTACAATGATTTCCAACGCGCTTCTCTCAACACTACAAAGCA 959
Query 1104 ACTTATTAAAGATCTAAAGAAGACTGATGCAGTTTTCCACATTGGAGATATTTGTTATGC 1163
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 ACTTATTAAAGATCTGAAGAAGACTGATGCAGTTTTCCACATTGGAGATATCTGTTATGC 1019
Query 1164 AAATGGATACCTTTCTCAATGGGACCAATTCATAGCACAGATTGAGCCTATTGCTTCCAC 1223
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1020 AAATGGATACCTTTCTCAATGGGACCAATTCATAGCACAGATTGAGCCAATTGCTTCCAC 1079
Query 1224 TGTTCCATATATGATTGCAAGCGGAAACCATGAGCGTGTCTGGCCCAACTCAGGATCGTT 1283
||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1080 TGTCCCATACATGATTGCAAGCGGAAACCATGAGCGTGACTGGCCTAACTCAGGATCGTT 1139
Query 1284 TTACGAGGGTTTAGACTCTGGAGGAGAATGTGGTGTTCCAGCTGAGACAATGTTCTATGT 1343
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1140 GTACCAGGGTTTAGACTCTGGAGGAGAATGTGGTGTACCAGCTGAGACAATGTTCTATGT 1199
Query 1344 TCCTGCTCAAAACAGAGCTAAGGTCTGGTACTCGAGTGACTACGGAATGTTTAGGTTCTG 1403
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 1200 TCCTGCTCAAAACAGAGCCAAGGTCTGGTACTCGAGTGACTATGGGATGTTTAGGTTCTG 1259
Query 1404 TGTGGCTGACACAGAACATGACTGGAGAGAAGGAACAGAGCAATACAATTTCATTGAACA 1463
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 TGTGGCTGATACAGAACATGACTGGAGAGAAGGAACAGAGCAATACAACTTCATTGAACA 1319
Query 1464 CTGCTTAGCATCAGTCGACAGGCAAAAGCAGCCATGGCTGATATTCCTCGCTCACCGTGT 1523
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1320 CTGCTTAGCATCAGTCGACAGGAAAAAGCAGCCGTGGCTGATATTCCTCGCTCACCGTGT 1379
Query 1524 TCTCGGTTATTCTTCCACATATTTTTATGCGGAAGAAGGCTCTTTTGCCGAACCTATGGG 1583
|||||||||||||||||| | |||||||||||||||||||||||||| ||||| || ||
Sbjct 1380 TCTCGGTTATTCTTCCACGTCGTTTTATGCGGAAGAAGGCTCTTTTGCTGAACCAATTGG 1439
Query 1584 AAGAGAAAGTCTTCAGAAGTTATGGCAGAAGTACAAAGTCGACATTGCTA-TCTATGGCC 1642
|||||| |||||||| ||| |||||||||||||||||||||||||||| | ||| |||||
Sbjct 1440 AAGAGACAGTCTTCAAAAGCTATGGCAGAAGTACAAAGTCGACATTGC-AGTCTTTGGCC 1498
Query 1643 ATGCACATAACTACGAGAGAACATGCCCGGTTTACCAGAGTGTATGCACGAGTCATGAGA 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ATGCACATAACTACGAGAGAACATGCCCGGTTTACCAGAGTGTATGCACGAGTCATGAGA 1558
Query 1703 AGAGTAACTACAAAGCTCCATTGAATGGAACCATTCACATTGTTGCTGGAGGTGGAGGAG 1762
||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 1559 AGAGTAACTACAAAGGTCCATTGAATGGAACCATCCACGTTGTTGCTGGGGGTGGAGGAG 1618
Query 1763 CTGGTCTTGCTGAATTCTCTGATCTTCAACCGAATTGGAGTCTGTTCAGAGACTATGATT 1822
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1619 CTGGTCTTGCTGAATTCTCTGATCTTCAACCGAATTGGAGTCTGTTTAGAGACTACGATT 1678
Query 1823 ACGGATTCCTTAAACTTACAGCCATTGATCACTCAAACCTTCTGTTTGAGTACAAGAAGA 1882
|||||||| ||||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct 1679 ACGGATTCGTTAAACTTACAGCTTTTGATCACTCTAATCTTCTGTTTGAGTACAAGAAGA 1738
Query 1883 GCAGTGACGGACGAGTCCACGATTCTTTCACGATATCAAAAGATTACAGAGACATCTTGG 1942
|||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct 1739 GCAGCGACGGACGAGTCCATGATTCTTTCACGATATCTAGAGATTACAGAGACATCTTGG 1798
Query 1943 CTTGTGCGGTTGATAGTTGTCCTGCAACTACACTTGCTTCATAA 1986
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1799 CTTGTGCGGTTGATAGTTGTCCTGCAACAACACTTGCTTCATAA 1842
> Ahg920261 jgi|Araly1|920261|scaffold_101542.1
Length=1594
Score = 1480 bits (801), Expect = 0.0
Identities = 1228/1434 (86%), Gaps = 30/1434 (2%)
Strand=Plus/Plus
Query 262 TTTGGTCTCAATGAAAAAGCTTATGTCAAAGCATCTCCAACAGTTCTTGGATCTAACGGT 321
|||| ||| |||||| |||||||| ||||||| ||||||||||||||||||||| | |||
Sbjct 57 TTTGATCTGAATGAACAAGCTTATATCAAAGCCTCTCCAACAGTTCTTGGATCTGATGGT 116
Query 322 CAACATAGT-GAATTAGTATTGGTCCAATATAGTTCTCCGAAACCATCTGATGATGATTG 380
||||||| | || | || ||||| |||||||||||||| | ||||| ||||| |||||
Sbjct 117 CAACATA-TGGAGTGGGTGTTGGTTGAATATAGTTCTCCGTACCCATCAGATGACGATTG 175
Query 381 GATTGGAGTGTTTTCTCCTGCAGATTTCAATGCTTCGACTTGTCCAGGAGATAACAAAAT 440
||| |||||||| ||||| | |||||||||||||||| |||||| | ||| || |||||
Sbjct 176 GATCGGAGTGTTCTCTCCAGGGGATTTCAATGCTTCGATTTGTCCTGCAGA-AATAAAAT 234
Query 441 -GGTCCAACCACCTCGACTTTGTTCAGCGCCTGTCAAGTTTCAATATGCAAACTT-TAGT 498
|| | ||||||| ||| ||||| |||||| |||||||||| ||||| || || |||
Sbjct 235 ACGTTGATCCACCTCTACTGTGTTCTGCGCCTATCAAGTTTCAGTATGCTAA-TTATAGC 293
Query 499 AATC-CAAGATACACCAA-TAC-TGGAACTGGTTCCTTGAAGCTTCAACTGATTAACCAA 555
|| | ||||||||| ||| ||| || | || ||| |||||||| ||||| || || ||
Sbjct 294 AA-CGCAAGATACA-CAAGTACAGGGTA-TGCTTCTTTGAAGCTACAACTCATCAATCAG 350
Query 556 AGATCGGATTTCTCCTTCGCG-CTCTTTTCTGGCGGTTTGTTGAATCCCAA-GCTTGTGG 613
|| | ||||| ||||| | | |||||||||||||||||||||||| |||| ||||||||
Sbjct 351 CGAGCAGATTTTTCCTTTG-GACTCTTTTCTGGCGGTTTGTTGAAT-CCAACGCTTGTGG 408
Query 614 CAATCTCAAACAAAGTAGCT-TTTGAGAATCCAAACGCACCAGTTTATCCGCGGTTGGCG 672
| |||||||||| |||| | |||||||| ||||| |||||| |||| || || |||||
Sbjct 409 CTGTCTCAAACAAGGTAG-TCTTTGAGAACCCAAATGCACCACTTTACCCACGTTTGGCA 467
Query 673 CTAGGCAAAGAATGGGATGAAATGACAGTGACATGGACTAGTGGTTATGGACTCAACCTA 732
||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||| || ||
Sbjct 468 CTAGGGAAAGAATGGGATGAAATTACAGTGACGTGGACTAGTGGGTATGGACTCGACATA 527
Query 733 GCTGAACCTGTTGTTGAGTGGGGCGTTAAAGG-AGGAGAACGTAAACTGTCACCTGCTGG 791
|| |||||||| || ||||||||| || | || |||||| |||||| | || ||||||||
Sbjct 528 GCAGAACCTGTAGTGGAGTGGGGCATT-ATGGAAGGAGAGCGTAAATTCTCGCCTGCTGG 586
Query 792 AACATTGACCTTCGCGCGTAACAGCATGTGCGGTGCTCCTGCAAGGACCGTGGGATGGCG 851
||| |||||||||| ||||||||||||||| || | |||||| || |||||||| ||| |
Sbjct 587 AACTTTGACCTTCGGGCGTAACAGCATGTGTGGGGATCCTGCTAGAACCGTGGGCTGGTG 646
Query 852 TGATCCCGGATACATACACACAGCTTTTCTCAAAGAGTTATGGCCAAACTCCAAGTATAC 911
||||||||| ||||||||||| || |||||||||||||| ||||| || |||||||| ||
Sbjct 647 TGATCCCGGTTACATACACACTGCATTTCTCAAAGAGTTGTGGCCTAATTCCAAGTACAC 706
Query 912 CTACAGAGTTGGTCATAGATTGTCCAATGGTGCATTGATCTGGAGTAAAGA-ATATCAAT 970
|| |||||||| |||| ||||| || ||||||| |||||||||||||| | |||| |
Sbjct 707 ATATAGAGTTGGGCATAAATTGTTCAGTGGTGCACACATCTGGAGTAAAGAGA-ATCAGT 765
Query 971 TCAAATCTTCTCCTTTCCCGGGACAAAACTCTGTCCAACAAGTTGTAATCTTTGGAGACA 1030
| ||||||||||||||||| || ||| | ||| |||| | || |||||||| |||||||
Sbjct 766 TTAAATCTTCTCCTTTCCCAGGCCAAGATTCTCTCCAGCGTGTGGTAATCTTCGGAGACA 825
Query 1031 TGGGAAAGGCAGAAGTCGATGGCTCAAGCGAGTACAATGATTTCCAACGCGCTTCTCTCA 1090
|||||||||| ||||| |||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 826 TGGGAAAGGCTGAAGTTGATGGCTCAAATGAGTACAAAGATTTTCAACGCGCTTCTCTCA 885
Query 1091 ACACCACAAAGCAACTTATTAAAGATCTAAAGAAGACTGATGCAGTTTTCCACATTGGAG 1150
||||||||||||| |||||| |||||||||||| ||||||||||||||||| || ||||
Sbjct 886 ACACCACAAAGCAGCTTATTCGAGATCTAAAGAACACTGATGCAGTTTTCCATATCGGAG 945
Query 1151 ATATTTGTTATGCAAATGGATACCTTTCTCAATGGGACCAATTCATAGCACAGATTGAGC 1210
|||| ||||||||||||||||||||||| || ||||| ||||||| ||| || || ||||
Sbjct 946 ATATCTGTTATGCAAATGGATACCTTTCGCAGTGGGATCAATTCACAGCGCAAATCGAGC 1005
Query 1211 CTATTGCTTCCACTGTTCCATATATGATTGCAAGCGGAAACCATGAGCGTGTCTGGCCCA 1270
| |||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct 1006 CAATTGCTTCCACTGTCCCATACATGATTGCAAGTGGAAACCATGAGCATGTCTGGCCCA 1065
Query 1271 ACTCAGGATCGTTTTACGAGGGTTTAGACTCTGGAGGAGAATGTGGTGTTCCAGCTGAGA 1330
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1066 ACTCAGGATCGTTTTACCAGGGTTTAGACTCTGGAGGAGAATGTGGTGTACCAGCTCAGA 1125
Query 1331 CAATGTTCTATGTTCCTGCTCAAAACAGAGCTAAGGTCTGGTACTCGAGTGACTACGGAA 1390
|||||||||| |||||||||||||||||||||||| |||||||||| |||||||| || |
Sbjct 1126 CAATGTTCTACGTTCCTGCTCAAAACAGAGCTAAGTTCTGGTACTCAAGTGACTATGGTA 1185
Query 1391 TGTTTAGGTTCTGTGTGGCTGACACAGAACAT-GACTGGAGAGAAGGAACAGAGCAATAC 1449
|||| |||||||| ||||| ||||||||| | ||||||||||||||||||||||| |||
Sbjct 1186 TGTTCAGGTTCTGCGTGGCCAACACAGAAC-TCGACTGGAGAGAAGGAACAGAGCAGTAC 1244
Query 1450 AATTTCATTGAACACTGCTTAGCATCAGTCGACAGGCAAAAGCAGCCATGGCTGATATTC 1509
|| ||||||||||||||||||||||||||||||||| |||| || || ||||||||||||
Sbjct 1245 AACTTCATTGAACACTGCTTAGCATCAGTCGACAGGGAAAAACAACCGTGGCTGATATTC 1304
Query 1510 CTCGCTCACCGTGTTCTCGGTTATTCTTCCA-CATATTTTTATGCGGAAG-AAGGCTCTT 1567
|| ||||| || || ||||||||||| | || || | || || || | || ||| |||||
Sbjct 1305 CTTGCTCATCGCGTGCTCGGTTATTCCT-CAGCAGACTTGTACGCTG-AGCAAGCCTCTT 1362
Query 1568 TTGCCGAACCTATGGGAAGAGAAAGTCTTCAGAAGTTATGGCAGAAGTACAAAGTCGACA 1627
| || || || ||||||||||| || ||||| ||| | ||||||||||||||||||||||
Sbjct 1363 TCGCAGAGCCGATGGGAAGAGATAGCCTTCAAAAGCTCTGGCAGAAGTACAAAGTCGACA 1422
Query 1628 TTGCTA-TCTATGGCCATGCACATAACTACGAGAGAACATGCCCGGTTTACCAG 1680
|||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 TTGC-AGTCTATGGCCATGCACATAACTACGAGAGAACATGCCCGGTTTACCAG 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78313543720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5