BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G13990.3
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911192 jgi|Araly1|911192|Al_scaffold_0001_1446 547 5e-155
> Ahg911192 jgi|Araly1|911192|Al_scaffold_0001_1446
Length=831
Score = 547 bits (296), Expect = 5e-155
Identities = 336/356 (94%), Gaps = 0/356 (0%)
Strand=Plus/Plus
Query 626 ACAGTGAAGTAGAAAAAGAGCTTGGACTGTTGTTCCCTAGTAGGATCAGCAACCAGACAA 685
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 476 ACAGTGAAGTGGAAAAGGAGCTTGGACTGTTGTTTCCTAGTAGGATCAGCAACCAGACAA 535
Query 686 AGCAGGCTAGACCCAAAACTAAATTCGATATGCTCGTAGAAGACATTCGAGATGGAGTAC 745
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 536 AACAGTCTAGACCCAAAACTAAATTCGATATGCTCGTAGAAGACATTCGAGATGGAGTTC 595
Query 746 TGGTTTTCGAAGATGTGAATGAGGCTGTTAGATACTGTGACCTATTACAAGGGGGAGGGA 805
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
Sbjct 596 TGGTTTTCGAAGATGTGAATGAGGCTGTTCGATACTGTGACCTATTACAAGGTGGAGGAA 655
Query 806 AAGGGTGTGAAGGTGTCGCTGAGATTGAGGCCTCCTCTGTTTTTGATCTTTGTCGGAAAA 865
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 656 AAGGGTGTGAAGGCGTCGCTGAGATTGAGGCCTCATCTGTTTTTGATCTTTGCCGGAAAA 715
Query 866 CAAGGTCTCTGGCAGTGCTCTTCCGCCGTGGAAGAACACCACCTACACCTCAGACGCTGG 925
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 716 CAAGGTCTCTGGCAGTTCTCTTCCGCCGTGGAAGAACACCACCTACACCTCAGACACTGG 775
Query 926 AACGTAATCTCGGATCCCGGAAGCGTTCTCTTGAGGACTTGAGGGATAATAAATAG 981
| |||||||| |||||||| ||||| |||||||||||||| ||||||| |||||||
Sbjct 776 AGCGTAATCTAGGATCCCGTAAGCGGTCTCTTGAGGACTTAAGGGATAGTAAATAG 831
Score = 544 bits (294), Expect = 7e-154
Identities = 359/389 (92%), Gaps = 9/389 (2%)
Strand=Plus/Plus
Query 55 ATGGAATCGCTAACATCTATTTCTCCTTCCATAATTCTTCCTCCGGCCACCACTACTACG 114
|||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||
Sbjct 1 ATGGAATCGCTAACATCTATTTCTCCTTCCATAATTCTCCCTCCGACCACCGCAACTACA 60
Query 115 ATCCCCGTTTCAACTTCACGATCAGTGTTGATTCGTCTTCCTT-CACGCCGTTCTTCTTA 173
||||| |||||||||||| |||||||||||||||||||| ||| | | |||||||||||
Sbjct 61 ATCCCTGTTTCAACTTCAGGATCAGTGTTGATTCGTCTT-CTTCCCCACCGTTCTTCTT- 118
Query 174 CCTTTT-CGGCTTGTCCAGCTCCGGGAGACGGATTTCGATTTCTAGAAGAAGACACTTCG 232
| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 CATTTTCCGGCTTGTCCAGCTCCGGGAGACGGATTTCGATTTCGAGAAGAAGACACTTCG 178
Query 233 TTAGCTGTAAATCGACCGGCGGCGGAGGAGGAGGATCAGATAAGCTTGGTGGCGATGAAG 292
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 CTAGCTGTAAATCCACCGGCGGC---GGAGGAGGATCAGATAAGCTTGGTGGCGATGAAG 235
Query 293 AAGAGAGCGAGGAAGTTGAGAAGGCGCTTCACTTGGATGGTACGATCCCTGGGACTTCCG 352
|||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||
Sbjct 236 AAGAGAGCGAGGAAGTTGAGCGGGCGCTTCACTTGGACGGTACGATTCCTGGGACTTCCG 295
Query 353 ATGAGTTTGTAAGGCAAGTTTCGTCGCGTGCTTACGACATGCGTCGGAAACTT-GAGCAG 411
||||||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||
Sbjct 296 ATGAGTTTGTAAGGCAAGTGTCGTCGCGTGCTTACGAGATGCGTCGGAAA-TTAGAGCAG 354
Query 412 ACGTTTGATTCCACTAGCTATGACGAGTT 440
|||||||||||||| |||||||||| |||
Sbjct 355 ACGTTTGATTCCACCAGCTATGACGTGTT 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40944012858
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5